Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g15490 Coffea canephora HOM05D006665 ORTHO05D008327 8.7e-218 760.0 377 100.0
Sopen02g021210 Solanum pennellii HOM05D006665 ORTHO05D008327 2.0e-158 562.8 378 70.4
Cfa000642 Carpinus fangiana HOM05D006665 ORTHO05D008327 3.5e-158 562.0 372 69.6
Solyc02g072230.3 Solanum lycopersicum HOM05D006665 ORTHO05D008327 5.9e-158 561.2 378 69.8
PGSC0003DMG400028425 Solanum tuberosum HOM05D006665 ORTHO05D008327 1.0e-157 560.5 378 70.6
GSVIVG01021249001 Vitis vinifera HOM05D006665 ORTHO05D008327 2.3e-157 559.3 373 70.8
CSS0008142 Camellia sinensis var. sinensis HOM05D006665 ORTHO05D008327 5.0e-157 558.1 373 71.3
QL05p048519 Quercus lobata HOM05D006665 ORTHO05D008327 8.6e-157 557.4 373 71.3
PGR042G0915 Punica granatum HOM05D006665 ORTHO05D008327 3.3e-156 555.4 376 69.1
Nitab4.5_0008526g0030 Nicotiana tabacum HOM05D006665 ORTHO05D008327 4.3e-156 555.1 376 71.3
Nn3g21119 Nelumbo nucifera HOM05D006665 ORTHO05D008327 6.1e-155 551.2 373 68.9
TAR627G0088 Trochodendron aralioides HOM05D006665 ORTHO05D008327 8.0e-155 550.8 376 68.6
MSTRG.7424 Avicennia marina HOM05D006665 ORTHO05D008327 6.8e-154 547.7 377 71.1
TWI73G0293 Tripterygium wilfordii HOM05D006665 ORTHO05D008327 5.7e-153 544.7 375 69.1
Aqoxy4G00257 Aquilegia oxysepala HOM05D006665 ORTHO05D008327 1.7e-152 543.1 377 65.8
HanXRQChr15g0480791 Helianthus annuus HOM05D006665 ORTHO05D008327 1.7e-152 543.1 375 70.1
Gohir.A10G035200 Gossypium hirsutum HOM05D006665 ORTHO05D008327 2.9e-152 542.3 380 67.6
Gorai.011G037800 Gossypium raimondii HOM05D006665 ORTHO05D008327 2.9e-152 542.3 380 67.4
Gohir.D10G035900 Gossypium hirsutum HOM05D006665 ORTHO05D008327 4.9e-152 541.6 380 67.4
Duzib235G0558 Durio zibethinus HOM05D006665 ORTHO05D008327 1.4e-151 540.0 376 68.6
Potri.011G069700 Populus trichocarpa HOM05D006665 ORTHO05D008327 3.2e-151 538.9 379 69.7
PSO170G0566 Papaver somniferum HOM05D000074 ORTHO05D000220 5.4e-151 538.1 376 67.6
Nitab4.5_0000437g0180 Nicotiana tabacum HOM05D006665 ORTHO05D008327 1.2e-150 537.0 386 68.7
Thecc.06G166800 Theobroma cacao HOM05D006665 ORTHO05D008327 4.6e-150 535.0 376 67.3
Ciclev10015641m.g Citrus clementina HOM05D006665 ORTHO05D008327 1.0e-149 533.9 372 68.0
Manes.17G058400 Manihot esculenta HOM05D006665 ORTHO05D008327 1.0e-149 533.9 375 68.0
CANSAT80G2447 Cannabis sativa HOM05D000074 ORTHO05D000220 6.6e-149 531.2 372 68.8
Migut.M01013 Erythranthe guttata HOM05D006665 ORTHO05D008327 6.6e-149 531.2 382 67.3
Eucgr.E04353 Eucalyptus grandis HOM05D006665 ORTHO05D008327 8.6e-149 530.8 375 68.3
THA.LOC104812882 Tarenaya hassleriana HOM05D006665 ORTHO05D008327 1.5e-148 530.0 379 67.5
COL.COLO4_31251 Corchorus olitorius HOM05D006665 ORTHO05D008327 3.3e-148 528.9 394 64.0
Sabra11G0053800 Salix brachista HOM05D006665 ORTHO05D008327 3.3e-148 528.9 379 68.6
Eucgr.E02766 Eucalyptus grandis HOM05D006665 ORTHO05D008327 5.6e-148 528.1 376 68.6
Dinv32346 Davidia involucrata HOM05D006665 ORTHO05D008327 1.4e-146 523.5 377 68.4
Sed0010934 Sechium edule HOM05D006665 ORTHO05D008327 9.8e-145 517.3 372 64.0
CsaV3_1G033140 Cucumis sativus L. HOM05D006665 ORTHO05D008327 2.2e-144 516.2 375 63.5
DCAR_005186 Daucus carota HOM05D006665 ORTHO05D008327 1.4e-143 513.5 377 64.2
Carub.0008s0223 Capsella rubella HOM05D006665 ORTHO05D008327 1.9e-143 513.1 378 68.3
Prupe.4G065800 Prunus persica HOM05D006665 ORTHO05D008327 5.4e-143 511.5 374 66.0
AL8G12850 Arabidopsis lyrata HOM05D006665 ORTHO05D008327 3.5e-142 508.8 378 65.3
CiPaw.09G072200 Carya illinoinensis HOM05D006665 ORTHO05D008327 3.5e-142 508.8 374 64.7
AT5G45760 Arabidopsis thaliana HOM05D006665 ORTHO05D008327 6.0e-142 508.1 378 65.3
MD05G1296500 Malus domestica HOM05D006665 ORTHO05D008327 7.8e-142 507.7 380 65.0
MBI07_g09544_MAGBIO Magnolia biondii HOM05D006665 ORTHO05D008327 1.3e-141 506.9 377 63.9
CARHR176220 Cardamine hirsuta HOM05D006665 ORTHO05D008327 5.0e-141 505.0 378 64.0
Sp2g10670 Schrenkiella parvula HOM05D006665 ORTHO05D008327 9.5e-140 500.7 379 66.0
Lj2C318T4 Lonicera japonica HOM05D006665 ORTHO05D008327 2.1e-139 499.6 377 66.0
Lalb_Chr13g0295211 Lupinus albus HOM05D006665 ORTHO05D008327 2.1e-139 499.6 378 63.8
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 8.1e-139 497.7 373 66.8
RcHm_v2.0_Chr5g0011451 Rosa chinensis HOM05D006665 ORTHO05D008327 8.1e-139 497.7 376 65.4
FvH4_1g07520 Fragaria vesca HOM05D006665 ORTHO05D008327 6.8e-138 494.6 376 63.8
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 8.9e-138 494.2 373 67.0
ECA236G1698 Erigeron canadensis HOM05D000074 ORTHO05D000220 2.6e-137 492.7 370 64.9
Peaxi162Scf00371g00319 Petunia axillaris HOM05D006665 ORTHO05D008327 2.6e-137 492.7 378 64.3
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 4.4e-137 491.9 376 66.8
FAN26G0384 Fragaria x ananassa HOM05D006665 ORTHO05D008327 4.4e-137 491.9 376 63.3
Sc05g0006960 Simmondsia chinensis HOM05D006665 ORTHO05D008327 2.9e-136 489.2 373 64.3
FAN19G1242 Fragaria x ananassa HOM05D006665 ORTHO05D008327 6.4e-136 488.0 377 63.4
FAN23G0824 Fragaria x ananassa HOM05D006665 ORTHO05D008327 6.4e-136 488.0 376 63.6
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.1e-134 483.0 371 64.7
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.3e-133 480.3 359 66.6
Sabra11G0057300 Salix brachista HOM05D000074 ORTHO05D000220 5.1e-133 478.4 353 65.4
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 5.6e-132 474.9 365 66.3
Thhalv10000923m.g Eutrema salsugineum HOM05D006665 ORTHO05D008327 6.2e-131 471.5 403 60.0
Aa31LG9G7310 Aethionema arabicum HOM05D006665 ORTHO05D008327 8.9e-130 467.6 383 62.1
Glyma.08G117600 Glycine max HOM05D006665 ORTHO05D008327 2.6e-129 466.1 375 63.2
ClCG03G007500 Citrullus lanatus HOM05D000074 ORTHO05D000220 9.9e-129 464.2 370 60.3
Phvul.002G240300 Phaseolus vulgaris HOM05D006665 ORTHO05D008327 2.2e-128 463.0 375 62.9
Glyma.05G160032 Glycine max HOM05D006665 ORTHO05D008327 3.2e-127 459.1 375 62.7
TPR.G6756 Trifolium pratense HOM05D006665 ORTHO05D008327 1.3e-125 453.8 378 59.5
EL10Ac8g20571 Beta vulgaris HOM05D006665 ORTHO05D008327 3.0e-125 452.6 375 60.5
Medtr8g086605 Medicago truncatula HOM05D006665 ORTHO05D008327 8.6e-125 451.1 378 58.7
FAN26G1216 Fragaria x ananassa HOM05D006665 ORTHO05D008327 1.5e-124 450.3 376 59.6
Os01g0205100 Oryza sativa ssp. japonica HOM05D006665 ORTHO05D008327 1.1e-122 444.1 371 58.2
arahy.Tifrunner.gnm1.ann1.L41MS4 Arachis hypogaea HOM05D006665 ORTHO05D008327 1.1e-119 434.1 374 60.7
Lj4g0005276 Lotus japonicus HOM05D000074 ORTHO05D008327 1.2e-118 430.6 370 57.3
AUR62027710 Chenopodium quinoa HOM05D006665 ORTHO05D008327 2.7e-118 429.5 364 58.8
arahy.Tifrunner.gnm1.ann1.UF726L Arachis hypogaea HOM05D006665 ORTHO05D008327 6.6e-117 424.9 368 60.3
Actinidia07650 Actinidia chinensis HOM05D006665 ORTHO05D008327 1.3e-115 420.6 247 79.4
SalBow8G2667 Salvia bowleyana HOM05D000074 ORTHO05D000220 5.3e-114 415.2 350 59.4
ATR0012G051 Amborella trichopoda HOM05D006665 ORTHO05D008327 9.3e-103 377.9 312 59.9
Ah.14g087040 Amaranthus hybridus HOM05D006665 ORTHO05D008327 2.1e-102 376.7 396 52.0
SEGI_17628 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 1.5e-97 360.5 376 46.3
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 7.2e-87 325.1 350 50.9
Pp3c18_2320 Physcomitrium patens HOM05D006665 ORTHO05D008327 1.3e-85 320.9 378 42.9
Zm00001eb120830 Zea mays HOM05D006665 ORTHO05D008327 3.4e-81 306.2 295 53.2
Atru.chr10.1583 Acer truncatum HOM05D006665 ORTHO05D008327 2.3e-77 293.5 181 74.6
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 8.8e-77 291.6 374 38.8
vmacro16044 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.9e-72 276.6 224 60.7
SMO118G0425 Selaginella moellendorffii HOM05D006665 ORTHO05D008327 1.4e-69 267.7 376 40.4
AagrBONN_evm.TU.Sc2ySwM_117.2766 Anthoceros agrestis HOM05D006665 ORTHO05D008327 7.0e-66 255.4 319 40.8
Rhsim02G0145600 Rhododendron simsii HOM05D006665 ORTHO05D008327 1.2e-65 254.6 208 61.1
Cpa.g.sc7.98 Carica papaya HOM05D006665 ORTHO05D008327 1.9e-63 247.3 151 75.5
BcaB06g27285 Brassica carinata HOM05D006665 ORTHO05D008327 9.4e-63 245.0 251 52.6
VMungo0251G1318 Vigna mungo HOM05D006665 ORTHO05D008327 1.8e-61 240.7 221 59.7
Lsat_1_v5_gn_7_25921 Lactuca sativa HOM05D006665 ORTHO05D008327 9.7e-60 235.0 209 58.4
CBR_g34019 Chara braunii HOM05D006665 ORTHO05D008327 1.1e-58 231.5 412 34.7
Haze_06187 Corylus avellana HOM05D006665 ORTHO05D008327 1.3e-56 224.6 185 58.4
AUR62039464 Chenopodium quinoa HOM05D006665 ORTHO05D008327 6.1e-54 215.7 183 58.5
Dinv12760 Davidia involucrata HOM05D006665 ORTHO05D008327 1.8e-53 214.2 253 52.2
Atru.chr10.1584 Acer truncatum HOM05D006665 ORTHO05D008327 1.5e-52 211.1 187 57.2
Hma1.2p1_0113F.1_g055090 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 3.4e-52 209.9 213 51.2
Hma1.2p1_0113F.1_g055096 Hydrangea macrophylla HOM05D006665 ORTHO05D008327 3.4e-52 209.9 213 51.2
SGA_v2.0_scaffold1G00072 Striga asiatica HOM05D006665 ORTHO05D008327 1.4e-50 204.5 127 70.9
Hund25815 Selenicereus undatus HOM05D006665 ORTHO05D008327 5.4e-50 202.6 181 56.4
BcaB04g18653 Brassica carinata HOM05D006665 ORTHO05D008327 2.2e-48 197.2 153 64.7
vmacro16043 Vaccinium macrocarpon HOM05D006665 ORTHO05D008327 2.2e-43 180.6 101 82.2
Oeu043117.1 Olea europaea HOM05D006665 ORTHO05D008327 3.1e-42 176.8 149 67.8
Haze_06186 Corylus avellana HOM05D006665 ORTHO05D008327 2.0e-41 174.1 143 61.5
Psat7g069080 Pisum sativum HOM05D006665 ORTHO05D008327 1.2e-38 164.9 124 61.3
Psat7g069040 Pisum sativum HOM05D006665 ORTHO05D008327 2.0e-33 147.5 265 36.2
Psat2g000080 Pisum sativum HOM05D006665 ORTHO05D008327 6.6e-32 142.5 141 48.9
RcHm_v2.0_Chr5g0011471 Rosa chinensis HOM05D006665 ORTHO05D008327 6.6e-32 142.5 173 46.8
Cre16.g678400 Chlamydomonas reinhardtii HOM05D006665 ORTHO05D008327 4.3e-23 113.2 177 36.2
SEGI_34445 Sequoiadendron giganteum HOM05D006665 ORTHO05D008327 3.1e-21 107.1 101 44.6
arahy.Tifrunner.gnm1.ann1.XDX40G Arachis hypogaea HOM05D006665 ORTHO05D008327 6.8e-21 105.9 72 63.9
MCO11G387 Micromonas commoda HOM05D006665 ORTHO05D008327 1.3e-19 101.7 348 25.3
arahy.Tifrunner.gnm1.ann1.H6TAT4 Arachis hypogaea HOM05D006665 ORTHO05D008327 2.9e-19 100.5 99 54.5
FAN11G1287 Fragaria x ananassa HOM05D006665 ORTHO05D008327 3.6e-14 83.6 193 34.7
VMungo0251G0552 Vigna mungo HOM05D006665 ORTHO05D008327 4.7e-14 83.2 73 54.8
FAN25G1258 Fragaria x ananassa HOM05D006665 ORTHO05D008327 5.8e-12 76.3 63 57.1
Sabra04G0038600 Salix brachista HOM05D000074 ORTHO05D000220 6.4e-11 72.8 104 45.2
FvH4_3g07410 Fragaria vesca HOM05D006665 ORTHO05D008327 8.6e-08 62.4 163 30.7
Lj9C240G9 Lonicera japonica HOM05D000347 ORTHO05D001997 5.6e-07 59.7 176 24.4
arahy.Tifrunner.gnm1.ann1.IN0C4L Arachis hypogaea HOM05D006665 ORTHO05D012122 7.3e-07 59.3 69 46.4


User provided reference genes

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