Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 6.3e-129 464.2 239 100.0
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 6.6e-70 268.1 239 62.3
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 8.0e-68 261.2 239 61.9
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.4e-66 255.4 232 59.9
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-65 253.4 238 59.2
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 2.4e-64 249.6 234 60.3
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 7.0e-64 248.1 234 60.3
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 1.0e-62 244.2 234 59.8
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.7e-62 243.4 238 57.6
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 8.6e-62 241.1 290 52.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 4.3e-61 238.8 243 56.8
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 4.7e-60 235.3 249 53.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 4.7e-60 235.3 243 56.0
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.1e-59 232.6 244 58.2
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 8.9e-59 231.1 242 56.2
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.0e-58 229.9 241 53.9
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.0e-58 229.9 231 57.1
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.7e-57 226.9 243 57.2
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 2.2e-57 226.5 241 54.4
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 3.7e-57 225.7 237 54.0
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 3.7e-57 225.7 238 55.9
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 8.3e-57 224.6 244 55.3
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 8.3e-57 224.6 243 52.7
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 1.1e-56 224.2 242 52.9
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 1.9e-56 223.4 239 54.4
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.9e-56 223.4 243 54.7
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 3.2e-56 222.6 239 52.7
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 7.1e-56 221.5 235 53.6
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 2.1e-55 219.9 228 55.7
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 2.7e-55 219.5 239 53.1
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.5e-55 219.2 242 52.1
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 4.6e-55 218.8 237 52.7
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 4.6e-55 218.8 242 51.7
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.3e-54 216.5 239 53.1
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.9e-54 215.7 267 49.4
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 3.9e-54 215.7 233 51.5
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.1e-54 215.3 239 53.1
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 3.3e-53 212.6 221 55.7
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.6e-53 211.8 244 52.5
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 1.6e-52 210.3 238 53.4
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 4.7e-52 208.8 243 54.3
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 1.1e-51 207.6 234 55.6
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 1.2e-50 204.1 237 48.5
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.6e-50 203.0 201 52.2
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 2.6e-50 203.0 239 49.4
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 5.8e-50 201.8 227 50.7
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.3e-49 200.7 242 51.7
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 2.2e-49 199.9 196 57.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.8e-49 199.1 201 51.2
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 4.9e-49 198.7 223 51.6
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 1.4e-48 197.2 241 49.4
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 1.4e-48 197.2 239 49.4
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 2.4e-48 196.4 235 49.4
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.2e-48 196.1 180 56.1
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 5.4e-48 195.3 203 52.7
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 5.4e-48 195.3 242 50.4
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 7.1e-48 194.9 239 49.8
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.1e-48 194.9 237 48.9
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.1e-48 194.9 237 48.9
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.6e-47 193.7 202 52.5
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 1.6e-47 193.7 226 50.0
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 2.1e-47 193.4 234 47.0
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.1e-47 193.4 237 48.1
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 4.6e-47 192.2 258 45.0
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 6.0e-47 191.8 262 47.3
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 7.8e-47 191.4 226 50.4
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 7.8e-47 191.4 242 51.2
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 7.8e-47 191.4 237 48.5
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.0e-46 191.0 211 51.2
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.0e-46 191.0 211 51.2
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 5.1e-46 188.7 237 48.5
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 6.6e-46 188.3 221 48.9
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 6.6e-46 188.3 224 48.2
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 6.6e-46 188.3 242 50.0
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 8.7e-46 188.0 233 47.2
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 1.5e-45 187.2 227 49.8
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 1.9e-45 186.8 235 47.7
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 1.9e-45 186.8 236 47.5
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.3e-45 185.7 237 48.1
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 7.3e-45 184.9 219 47.9
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 2.1e-44 183.3 200 57.0
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.1e-44 183.3 238 47.5
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 8.1e-44 181.4 235 46.0
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.1e-43 181.0 240 45.8
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.0e-43 179.1 203 49.3
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.5e-42 177.2 194 51.5
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 9.9e-42 174.5 203 48.3
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 9.9e-42 174.5 239 45.2
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 2.2e-41 173.3 240 47.9
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 3.8e-41 172.6 246 43.5
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 6.4e-41 171.8 238 46.6
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-40 171.0 205 48.3
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.4e-40 170.6 243 47.3
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.2e-40 169.5 222 47.3
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 1.2e-39 167.5 240 46.7
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 2.1e-39 166.8 237 45.6
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 3.5e-39 166.0 205 51.2
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-38 163.7 204 48.5
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.7e-38 163.7 237 42.6
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 2.3e-38 163.3 240 47.9
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 3.9e-38 162.5 233 44.6
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 3.9e-38 162.5 225 45.3
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 8.7e-38 161.4 237 45.1
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 5.6e-37 158.7 234 44.4
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 5.6e-37 158.7 217 47.0
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 9.6e-37 157.9 235 42.6
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 1.3e-36 157.5 174 55.7
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 1.6e-36 157.1 247 42.9
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 3.6e-36 156.0 211 45.5
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 6.2e-36 155.2 229 44.1
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 1.1e-35 154.5 172 55.8
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 2.4e-35 153.3 198 47.0
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.3e-35 152.1 230 43.9
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 5.3e-35 152.1 180 44.4
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 1.2e-34 151.0 237 43.5
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 3.4e-34 149.4 184 53.8
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-33 147.1 174 48.3
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 4.9e-33 145.6 119 63.0
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 8.4e-33 144.8 239 40.2
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 1.6e-31 140.6 236 39.8
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 3.0e-30 136.3 204 40.2
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 1.5e-29 134.0 204 41.2
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 7.4e-29 131.7 239 39.3
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.3e-28 131.0 227 39.6
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 1.6e-28 130.6 244 42.2
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 3.7e-28 129.4 229 38.0
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 3.7e-28 129.4 235 42.1
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.4e-27 127.5 249 37.8
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 3.8e-25 119.4 234 38.0
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.1e-24 117.9 99 65.7
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-24 117.1 171 43.9
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 3.2e-24 116.3 109 54.1
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 7.1e-24 115.2 165 46.1
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.2e-23 114.4 159 43.4
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-23 113.6 189 39.7
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.6e-20 104.0 179 38.0
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 2.1e-20 103.6 247 32.4
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 4.5e-18 95.9 143 44.8
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 4.9e-17 92.4 154 40.3
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 1.4e-16 90.9 162 37.0
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 3.2e-16 89.7 150 39.3
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 2.1e-15 87.0 236 30.9
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.7e-14 81.6 98 44.9
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.9e-13 80.5 88 51.1
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 4.3e-13 79.3 88 51.1
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 1.6e-12 77.4 94 47.9
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 6.3e-12 75.5 93 44.1
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-11 72.4 65 56.9
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.5e-10 70.9 38 92.1
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 1.5e-10 70.9 38 92.1
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 5.9e-10 68.9 65 55.4
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 1.1e-08 64.7 102 45.1
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 1.2e-07 61.2 105 39.0
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-07 60.5 122 31.1
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 2.1e-07 60.5 60 55.0
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 6.7e-06 55.5 102 40.2


User provided reference genes

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