Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g15350 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-123 447.6 427 100.0
Cc04_g14440 Coffea canephora HOM05D000021 ORTHO05D000010 2.3e-12 77.8 211 91.5
Cc09_g08290 Coffea canephora HOM05D000021 ORTHO05D000010 3.8e-12 77.0 95 43.2
Cc00_g14100 Coffea canephora HOM05D000021 ORTHO05D000010 2.5e-11 74.3 207 73.4
Cc00_g31760 Coffea canephora HOM05D000021 ORTHO05D000010 1.6e-10 71.6 209 91.4
Cc05_g01480 Coffea canephora HOM05D000021 ORTHO05D000010 4.7e-10 70.1 37 86.5
MD10G1277300 Malus domestica HOM05D000021 ORTHO05D011302 6.8e-09 66.2 178 30.9
Cc00_g30640 Coffea canephora HOM05D000021 ORTHO05D000010 1.2e-08 65.5 89 38.2
CAN.G1505.7 Capsicum annuum HOM05D000021 ORTHO05D000010 1.5e-08 65.1 112 35.7
Cc09_g08840 Coffea canephora HOM05D000021 ORTHO05D000010 5.7e-08 63.2 39 76.9
Cc05_g01190 Coffea canephora HOM05D000021 ORTHO05D000010 7.5e-08 62.8 88 36.4
Actinidia39594 Actinidia chinensis HOM05D000021 ORTHO05D000010 1.3e-07 62.0 124 35.5
MD07G1035900 Malus domestica HOM05D000021 ORTHO05D000010 1.7e-07 61.6 84 36.9
Cc02_g30790 Coffea canephora HOM05D000021 ORTHO05D000010 2.9e-07 60.8 40 67.5
Lj6C366G7 Lonicera japonica HOM05D000517 ORTHO05D000751 2.9e-07 60.8 191 23.0
Oeu038894.1 Olea europaea HOM05D000071 ORTHO05D000029 3.7e-07 60.5 186 33.3
Hma1.2p1_1656F.1_g296020 Hydrangea macrophylla HOM05D000053 ORTHO05D000035 4.9e-07 60.1 192 29.7
MD05G1297800 Malus domestica HOM05D000021 ORTHO05D000010 4.9e-07 60.1 76 39.5
Migut.M01019 Erythranthe guttata HOM05D000021 ORTHO05D000010 6.3e-07 59.7 39 71.8
Gorai.002G049400 Gossypium raimondii HOM05D000021 ORTHO05D000010 6.3e-07 59.7 188 30.9
MD05G1297700 Malus domestica HOM05D000021 ORTHO05D000010 6.3e-07 59.7 76 39.5
MD10G1277500 Malus domestica HOM05D000021 ORTHO05D000010 6.3e-07 59.7 76 36.8
CiPaw.13G061500 Carya illinoinensis HOM05D000166 ORTHO05D001348 8.3e-07 59.3 131 32.8
Cc00_g21480 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 59.3 39 66.7
Cc00_g24400 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 59.3 39 66.7
Cc00_g30700 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 59.3 39 66.7
Cc02_g15270 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 59.3 39 66.7
Cc02_g15310 Coffea canephora HOM05D000021 ORTHO05D000010 8.3e-07 59.3 39 66.7
Glyma.09G217200 Glycine max HOM05D000021 ORTHO05D000010 8.3e-07 59.3 129 33.3
CAN.G647.12 Capsicum annuum HOM05D000021 ORTHO05D000010 1.1e-06 58.9 138 31.2
Cc06_g19510 Coffea canephora HOM05D000021 ORTHO05D000010 1.1e-06 58.9 39 71.8
Cc09_g06850 Coffea canephora HOM05D000021 ORTHO05D152980 1.1e-06 58.9 202 27.7
Lj1g0017370 Lotus japonicus HOM05D000071 ORTHO05D000029 1.1e-06 58.9 176 27.8
MD03G1180000 Malus domestica HOM05D000021 ORTHO05D000010 1.1e-06 58.9 77 39.0
Gohir.D01G039832 Gossypium hirsutum HOM05D000021 ORTHO05D000010 1.4e-06 58.5 211 27.0
Nitab4.5_0003736g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.4e-06 58.5 39 69.2
CAN.G160.36 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-06 58.2 83 38.6
CAN.G1909.7 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-06 58.2 116 31.0
CAN.G411.79 Capsicum annuum HOM05D000021 ORTHO05D000010 1.8e-06 58.2 39 69.2
CiPaw.10G099500 Carya illinoinensis HOM05D000021 ORTHO05D000010 1.8e-06 58.2 146 32.2
Cc00_g28070 Coffea canephora HOM05D000021 ORTHO05D000010 1.8e-06 58.2 125 33.6
Cc02_g15450 Coffea canephora HOM05D000021 ORTHO05D000010 1.8e-06 58.2 87 34.5
Nitab4.5_0002185g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 1.8e-06 58.2 164 29.3
AT3G25010 Arabidopsis thaliana HOM05D000053 ORTHO05D000035 2.4e-06 57.8 127 32.3
Cc00_g34940 Coffea canephora HOM05D000021 ORTHO05D000010 2.4e-06 57.8 39 66.7
Cc09_g05600 Coffea canephora HOM05D000021 ORTHO05D000010 2.4e-06 57.8 39 69.2
Dinv03885 Davidia involucrata HOM05D000021 ORTHO05D000010 2.4e-06 57.8 85 38.8
SHI06428 Sapria himalayana HOM05D000517 ORTHO05D000751 2.4e-06 57.8 221 26.7
Sc12g0004880 Simmondsia chinensis HOM05D000517 ORTHO05D003374 2.4e-06 57.8 239 25.1
CAN.G1909.10 Capsicum annuum HOM05D000021 ORTHO05D000010 3.2e-06 57.4 150 28.0
MD02G1291700 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-06 57.4 83 33.7
MD05G1298300 Malus domestica HOM05D000021 ORTHO05D000010 3.2e-06 57.4 76 35.5
QL11p027678 Quercus lobata HOM05D000029 ORTHO05D002500 3.2e-06 57.4 164 29.9
CAN.G1286.15 Capsicum annuum HOM05D000021 ORTHO05D000010 4.1e-06 57.0 129 33.3
CAN.G824.12 Capsicum annuum HOM05D000021 ORTHO05D000010 4.1e-06 57.0 114 34.2
Ca_25055_v3 Cicer arietinum L. HOM05D000021 ORTHO05D000010 4.1e-06 57.0 119 35.3
Cc02_g15280 Coffea canephora HOM05D000021 ORTHO05D000010 4.1e-06 57.0 39 64.1
Cc09_g05620 Coffea canephora HOM05D000021 ORTHO05D000010 4.1e-06 57.0 39 66.7
Cc09_g05670 Coffea canephora HOM05D000021 ORTHO05D000010 4.1e-06 57.0 39 66.7
DCAR_030101 Daucus carota HOM05D004673 ORTHO05D005596 4.1e-06 57.0 192 28.1
MD07G1034800 Malus domestica HOM05D000021 ORTHO05D000010 4.1e-06 57.0 84 35.7
Nitab4.5_0002405g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 4.1e-06 57.0 39 69.2
SalBow6G0329 Salvia bowleyana HOM05D000021 ORTHO05D000010 4.1e-06 57.0 39 66.7
SalBow6G5051 Salvia bowleyana HOM05D000053 ORTHO05D000035 4.1e-06 57.0 39 66.7
SalBow7G2809 Salvia bowleyana HOM05D000021 ORTHO05D000010 4.1e-06 57.0 39 66.7
TWI38G1520 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 4.1e-06 57.0 87 33.3
Cc09_g05700 Coffea canephora HOM05D000021 ORTHO05D000010 5.4e-06 56.6 39 69.2
COL.COLO4_02784 Corchorus olitorius HOM05D000021 ORTHO05D000010 5.4e-06 56.6 39 64.1
MD13G1193600 Malus domestica HOM05D000021 ORTHO05D000010 5.4e-06 56.6 60 45.0
Nitab4.5_0000428g0090 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.4e-06 56.6 40 65.0
Nitab4.5_0002300g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 5.4e-06 56.6 40 65.0
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 5.4e-06 56.6 155 31.0
GSVIVG01017404001 Vitis vinifera HOM05D000311 ORTHO05D000183 5.4e-06 56.6 96 38.5
ATR0069G022 Amborella trichopoda HOM05D000517 ORTHO05D000751 7.0e-06 56.2 244 24.2
Cc03_g09240 Coffea canephora HOM05D000021 ORTHO05D000010 7.0e-06 56.2 40 65.0
Cc03_g09260 Coffea canephora HOM05D000021 ORTHO05D000010 7.0e-06 56.2 40 70.0
Gohir.A01G054900 Gossypium hirsutum HOM05D000053 ORTHO05D000035 7.0e-06 56.2 77 35.1
MD03G1181600 Malus domestica HOM05D000021 ORTHO05D000010 7.0e-06 56.2 77 36.4
Nitab4.5_0001288g0100 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.0e-06 56.2 39 64.1
Nitab4.5_0002185g0130 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.0e-06 56.2 39 64.1
Nitab4.5_0003943g0040 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.0e-06 56.2 39 66.7
Nitab4.5_0005588g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 7.0e-06 56.2 55 56.4
SalBow6G3103 Salvia bowleyana HOM05D019468 ORTHO05D000010 7.0e-06 56.2 39 66.7
SalBow6G3755 Salvia bowleyana HOM05D000021 ORTHO05D000010 7.0e-06 56.2 39 66.7
PGSC0003DMG400028473 Solanum tuberosum HOM05D000021 ORTHO05D000010 7.0e-06 56.2 39 66.7
TPR.G4580 Trifolium pratense HOM05D000071 ORTHO05D000029 7.0e-06 56.2 216 26.9
CANSAT35G0007 Cannabis sativa HOM05D000054 ORTHO05D000171 9.2e-06 55.8 70 40.0
Ciclev10017447m.g Citrus clementina HOM05D000053 ORTHO05D000035 9.2e-06 55.8 180 25.6
Cc09_g05650 Coffea canephora HOM05D000021 ORTHO05D000010 9.2e-06 55.8 39 66.7
Cc09_g05730 Coffea canephora HOM05D000021 ORTHO05D000010 9.2e-06 55.8 39 66.7
Nitab4.5_0007465g0010 Nicotiana tabacum HOM05D000021 ORTHO05D000010 9.2e-06 55.8 109 33.9
RcHm_v2.0_Chr6g0277691 Rosa chinensis HOM05D000021 ORTHO05D000010 9.2e-06 55.8 76 40.8
PGSC0003DMG400020848 Solanum tuberosum HOM05D000021 ORTHO05D000010 9.2e-06 55.8 39 66.7


User provided reference genes

Program Settings