Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g15040 Coffea canephora HOM05D005280 ORTHO05D006253 5.5e-80 302.0 146 100.0
VMungo0540G1202 Vigna mungo HOM05D005280 ORTHO05D006253 3.9e-65 252.7 146 82.2
Lj1A206T60 Lonicera japonica HOM05D005280 ORTHO05D006253 5.0e-65 252.3 146 81.5
Phvul.006G175800 Phaseolus vulgaris HOM05D005280 ORTHO05D006253 1.1e-64 251.1 146 80.8
arahy.Tifrunner.gnm1.ann1.8U8ZZM Arachis hypogaea HOM05D005280 ORTHO05D006253 1.5e-64 250.8 146 80.8
arahy.Tifrunner.gnm1.ann1.IM81E3 Arachis hypogaea HOM05D005280 ORTHO05D006253 1.5e-64 250.8 146 80.8
Glyma.13G229400 Glycine max HOM05D005280 ORTHO05D006253 1.9e-64 250.4 146 80.1
Lalb_Chr20g0117481 Lupinus albus HOM05D005280 ORTHO05D006253 1.9e-64 250.4 146 81.5
Glyma.15G083100 Glycine max HOM05D005280 ORTHO05D006253 3.3e-64 249.6 146 80.8
Psat1g197880 Pisum sativum HOM05D005280 ORTHO05D006253 5.6e-64 248.8 146 80.8
MD10G1279400 Malus domestica HOM05D005280 ORTHO05D006253 7.3e-64 248.4 149 78.5
Potri.004G057600 Populus trichocarpa HOM05D005280 ORTHO05D006253 7.3e-64 248.4 146 78.8
CANSAT80G2107 Cannabis sativa HOM05D005280 ORTHO05D006253 9.5e-64 248.1 146 79.5
Ca_00439_v3 Cicer arietinum L. HOM05D005280 ORTHO05D006253 9.5e-64 248.1 146 79.5
Medtr2g016160 Medicago truncatula HOM05D005280 ORTHO05D006253 9.5e-64 248.1 146 79.5
ECA236G4327 Erigeron canadensis HOM05D005280 ORTHO05D006253 1.6e-63 247.3 146 78.8
QL05p047377 Quercus lobata HOM05D005280 ORTHO05D006253 1.6e-63 247.3 146 78.1
PGSC0003DMG400009000 Solanum tuberosum HOM05D005280 ORTHO05D006253 1.6e-63 247.3 145 80.7
Prupe.4G062000 Prunus persica HOM05D005280 ORTHO05D006253 2.8e-63 246.5 149 77.9
RcHm_v2.0_Chr5g0010881 Rosa chinensis HOM05D005280 ORTHO05D006253 2.8e-63 246.5 146 80.1
PGSC0003DMG400008719 Solanum tuberosum HOM05D005280 ORTHO05D006253 3.6e-63 246.1 145 80.0
unitig_699.g19366 Utricularia gibba HOM05D005280 ORTHO05D006253 3.6e-63 246.1 146 78.8
DCAR_007943 Daucus carota HOM05D005280 ORTHO05D006253 4.7e-63 245.7 146 78.8
Migut.M01035 Erythranthe guttata HOM05D005280 ORTHO05D006253 4.7e-63 245.7 146 80.1
MD05G1300300 Malus domestica HOM05D005280 ORTHO05D006253 4.7e-63 245.7 151 77.5
Sed0011601 Sechium edule HOM05D005280 ORTHO05D006253 4.7e-63 245.7 146 80.1
Hma1.2p1_1912F.1_g307320 Hydrangea macrophylla HOM05D005280 ORTHO05D006253 6.2e-63 245.4 146 78.8
Lsat_1_v5_gn_7_24160 Lactuca sativa HOM05D005280 ORTHO05D006253 6.2e-63 245.4 146 78.1
CAN.G206.30 Capsicum annuum HOM05D005280 ORTHO05D006253 8.0e-63 245.0 145 79.3
Manes.16G040400 Manihot esculenta HOM05D005280 ORTHO05D006253 8.0e-63 245.0 146 78.1
FvH4_3g07730 Fragaria vesca HOM05D005280 ORTHO05D006253 1.0e-62 244.6 146 79.5
FAN11G1284 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-62 244.6 146 79.5
FAN16G3700 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-62 244.6 146 79.5
FAN25G0161 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.0e-62 244.6 146 79.5
Lj6g0027668 Lotus japonicus HOM05D005280 ORTHO05D006253 1.0e-62 244.6 145 80.7
Solyc03g062940.3 Solanum lycopersicum HOM05D005280 ORTHO05D006253 1.0e-62 244.6 145 79.3
Sopen03g015240 Solanum pennellii HOM05D005280 ORTHO05D006253 1.0e-62 244.6 145 79.3
vmacro16064 Vaccinium macrocarpon HOM05D005280 ORTHO05D006253 1.0e-62 244.6 146 80.1
Dinv40681 Davidia involucrata HOM05D005280 ORTHO05D006253 1.4e-62 244.2 146 79.5
FAN21G3704 Fragaria x ananassa HOM05D005280 ORTHO05D006253 1.4e-62 244.2 146 78.8
HanXRQChr05g0139841 Helianthus annuus HOM05D005280 ORTHO05D006253 1.4e-62 244.2 146 77.4
Manes.17G056200 Manihot esculenta HOM05D005280 ORTHO05D006253 1.4e-62 244.2 146 77.4
Peaxi162Scf00871g00047 Petunia axillaris HOM05D005280 ORTHO05D006253 1.8e-62 243.8 145 80.0
CSS0022801 Camellia sinensis var. sinensis HOM05D005280 ORTHO05D006253 2.3e-62 243.4 146 78.1
Dinv16775 Davidia involucrata HOM05D005280 ORTHO05D006253 2.3e-62 243.4 146 79.5
Rhsim02G0143200 Rhododendron simsii HOM05D005280 ORTHO05D006253 2.3e-62 243.4 146 79.5
SGA_v2.0_scaffold1G00053 Striga asiatica HOM05D005280 ORTHO05D006253 2.3e-62 243.4 146 79.5
Sabra04G0037300 Salix brachista HOM05D005280 ORTHO05D006253 3.1e-62 243.0 146 77.4
MSTRG.7412 Avicennia marina HOM05D005280 ORTHO05D006253 5.2e-62 242.3 146 79.5
Ciclev10015974m.g Citrus clementina HOM05D005280 ORTHO05D006253 6.8e-62 241.9 146 78.8
MELO3C007211.2 Cucumis melo HOM05D005280 ORTHO05D006253 6.8e-62 241.9 146 79.5
ClCG01G023770 Citrullus lanatus HOM05D005280 ORTHO05D006253 8.9e-62 241.5 146 79.5
CsaV3_6G050930 Cucumis sativus L. HOM05D005280 ORTHO05D006253 8.9e-62 241.5 146 79.5
Atru.chr10.1658 Acer truncatum HOM05D005280 ORTHO05D006253 1.5e-61 240.7 146 78.1
Cfa000612 Carpinus fangiana HOM05D005280 ORTHO05D006253 2.0e-61 240.4 146 76.7
CiPaw.10G059400 Carya illinoinensis HOM05D005280 ORTHO05D006253 2.6e-61 240.0 146 78.1
Haze_06226 Corylus avellana HOM05D005280 ORTHO05D006253 2.6e-61 240.0 146 77.4
AUR62017603 Chenopodium quinoa HOM05D005280 ORTHO05D006253 3.4e-61 239.6 146 77.4
TWI38G0304 Tripterygium wilfordii HOM05D005280 ORTHO05D006253 3.4e-61 239.6 146 75.3
BcaB07g32507 Brassica carinata HOM05D005280 ORTHO05D006253 4.4e-61 239.2 146 76.7
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.8e-61 238.8 145 75.9
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 7.5e-61 238.4 145 75.9
PGR042G3394 Punica granatum HOM05D005280 ORTHO05D006253 7.5e-61 238.4 146 74.7
AUR62015144 Chenopodium quinoa HOM05D005280 ORTHO05D006253 9.8e-61 238.0 146 77.4
Ah.01g013480 Amaranthus hybridus HOM05D005280 ORTHO05D006253 2.2e-60 236.9 146 76.0
Actinidia39510 Actinidia chinensis HOM05D005280 ORTHO05D006253 2.9e-60 236.5 146 76.0
Nn1g04427 Nelumbo nucifera HOM05D005280 ORTHO05D006253 4.9e-60 235.7 146 76.0
PSO229G0003 Papaver somniferum HOM05D005280 ORTHO05D006253 4.9e-60 235.7 146 74.7
TAR629G2088 Trochodendron aralioides HOM05D005280 ORTHO05D006253 4.9e-60 235.7 146 73.3
EL10Ac9g22853 Beta vulgaris HOM05D005280 ORTHO05D006253 1.1e-59 234.6 146 77.4
PSO675G8759 Papaver somniferum HOM05D005280 ORTHO05D006253 1.4e-59 234.2 146 74.0
Aqoxy170s003 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.9e-59 233.8 146 74.0
Aqoxy7G03216 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 1.9e-59 233.8 146 74.0
BraA08t34477Z Brassica rapa HOM05D005280 ORTHO05D006253 1.9e-59 233.8 146 76.0
BcaB03g12145 Brassica carinata HOM05D005280 ORTHO05D006253 3.2e-59 233.0 146 74.7
Sp1g25120 Schrenkiella parvula HOM05D005280 ORTHO05D006253 3.2e-59 233.0 146 74.7
BcaC01g00082 Brassica carinata HOM05D005280 ORTHO05D006253 4.1e-59 232.6 146 75.3
C03p75590 Brassica napus HOM05D005280 ORTHO05D006253 4.1e-59 232.6 146 75.3
BolC3t19816H Brassica oleracea HOM05D005280 ORTHO05D006253 4.1e-59 232.6 146 75.3
MBI05_g10770_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 5.4e-59 232.3 146 74.7
THA.LOC104812639 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 7.0e-59 231.9 146 73.3
Thhalv10008237m.g Eutrema salsugineum HOM05D005280 ORTHO05D006253 9.2e-59 231.5 146 73.3
MBI07_g43934_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 9.2e-59 231.5 146 74.7
HPP92_008751 Vanilla planifolia HOM05D005280 ORTHO05D006253 9.2e-59 231.5 146 73.3
BcaC05g26943 Brassica carinata HOM05D005280 ORTHO05D006253 1.2e-58 231.1 146 71.9
A09p37140 Brassica napus HOM05D005280 ORTHO05D006253 1.2e-58 231.1 146 71.9
C05p27910 Brassica napus HOM05D005280 ORTHO05D006253 1.2e-58 231.1 146 71.9
BolC5t31517H Brassica oleracea HOM05D005280 ORTHO05D006253 1.2e-58 231.1 146 71.9
BraA09t39230Z Brassica rapa HOM05D005280 ORTHO05D006253 1.2e-58 231.1 146 71.9
Sc05g0007070 Simmondsia chinensis HOM05D005280 ORTHO05D006253 1.2e-58 231.1 146 72.6
CDE10G0374 Ceratophyllum demersum HOM05D005280 ORTHO05D006253 1.6e-58 230.7 146 72.6
Thecc.06G170100 Theobroma cacao HOM05D005280 ORTHO05D006253 1.6e-58 230.7 147 73.5
AT1G29260 Arabidopsis thaliana HOM05D005280 ORTHO05D006253 2.7e-58 229.9 146 74.0
Carub.0001s2739 Capsella rubella HOM05D005280 ORTHO05D006253 2.7e-58 229.9 146 73.3
SHI28515 Sapria himalayana HOM05D005280 ORTHO05D006253 2.7e-58 229.9 146 75.3
CARHR028510 Cardamine hirsuta HOM05D005280 ORTHO05D006253 3.5e-58 229.6 146 72.6
Duzib160G0285 Durio zibethinus HOM05D005280 ORTHO05D006253 6.0e-58 228.8 147 72.8
THA.LOC104804949 Tarenaya hassleriana HOM05D005280 ORTHO05D006253 6.0e-58 228.8 146 71.9
AL1G42940 Arabidopsis lyrata HOM05D005280 ORTHO05D006253 1.3e-57 227.6 146 72.6
COL.COLO4_31288 Corchorus olitorius HOM05D005280 ORTHO05D006253 1.7e-57 227.3 147 70.7
Gohir.A10G036800 Gossypium hirsutum HOM05D005280 ORTHO05D006253 1.7e-57 227.3 147 72.1
Gorai.011G039400 Gossypium raimondii HOM05D005280 ORTHO05D006253 2.3e-57 226.9 147 72.8
Aa31LG6G6330 Aethionema arabicum HOM05D005280 ORTHO05D006253 5.0e-57 225.7 147 72.1
Duzib192G0183 Durio zibethinus HOM05D005280 ORTHO05D006253 5.0e-57 225.7 146 71.2
Gohir.D10G037400 Gossypium hirsutum HOM05D005280 ORTHO05D006253 5.0e-57 225.7 147 72.1
Mapoly0030s0014 Marchantia polymorpha HOM05D005280 ORTHO05D006253 3.5e-50 203.0 146 62.3
SMO119G0322 Selaginella moellendorffii HOM05D005280 ORTHO05D006253 9.5e-48 194.9 146 63.7
Pp3c17_8040 Physcomitrium patens HOM05D005280 ORTHO05D006253 4.7e-47 192.6 146 56.8
PSO782G3364 Papaver somniferum HOM05D005280 ORTHO05D006253 9.9e-45 184.9 118 72.9
Zm00001eb238680 Zea mays HOM05D005280 ORTHO05D006253 8.4e-44 181.8 146 56.2
A08p25250 Brassica napus HOM05D005280 ORTHO05D006253 9.2e-43 178.3 146 61.0
Cre17.g730200 Chlamydomonas reinhardtii HOM05D005280 ORTHO05D006253 1.7e-41 174.1 142 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3414 Anthoceros agrestis HOM05D005280 ORTHO05D006253 1.5e-40 171.0 146 56.2
Aqoxy1G02047 Aquilegia oxysepala HOM05D005280 ORTHO05D006253 3.1e-38 163.3 109 70.6
CBR_g23503 Chara braunii HOM05D005280 ORTHO05D006253 2.6e-37 160.2 144 52.1
Sabra11G0048200 Salix brachista HOM05D005280 ORTHO05D006253 9.9e-37 158.3 99 70.7
SEGI_31924 Sequoiadendron giganteum HOM05D005280 ORTHO05D006253 1.3e-36 157.9 114 64.9
Cpa.g.sc7.74 Carica papaya HOM05D005280 ORTHO05D006253 8.4e-36 155.2 146 55.5
PRCOL_00004365 Prasinoderma coloniale HOM05D005280 ORTHO05D006253 5.1e-33 146.0 113 59.3
MCO15G120 Micromonas commoda HOM05D005280 ORTHO05D006253 2.5e-32 143.7 113 55.8
Pp3c15_2410 Physcomitrium patens HOM05D005280 ORTHO05D006253 8.1e-31 138.7 134 47.8
ATR0706G060 Amborella trichopoda HOM05D005280 ORTHO05D006253 4.5e-29 132.9 117 54.7
AUR62034161 Chenopodium quinoa HOM05D005280 ORTHO05D006253 4.5e-21 106.3 146 41.1
MBI16_g15539_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 1.6e-18 97.8 146 41.1
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 7.4e-16 89.0 146 37.7
FAN14G0286 Fragaria x ananassa HOM05D005280 ORTHO05D019446 2.7e-10 70.5 120 36.7
Dinv41375 Davidia involucrata HOM05D000140 ORTHO05D000087 1.3e-09 68.2 137 36.5
VMungo1383G1864 Vigna mungo HOM05D005280 ORTHO05D006253 2.5e-08 63.9 41 70.7
VMungo0331G0944 Vigna mungo HOM05D005280 ORTHO05D006253 5.7e-08 62.8 35 74.3
Potri.011G066600 Populus trichocarpa HOM05D005280 ORTHO05D006253 6.3e-07 59.3 32 71.9


User provided reference genes

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