Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14720 Coffea canephora HOM05D014572 ORTHO05D016880 3.7e-191 671.4 339 100.0
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 1.1e-14 85.1 303 30.4
Duzib235G1377 Durio zibethinus HOM05D004563 ORTHO05D002944 5.6e-14 82.8 70 55.7
Gohir.D06G136800 Gossypium hirsutum HOM05D004563 ORTHO05D002944 3.1e-12 77.0 70 51.4
Gorai.010G159000 Gossypium raimondii HOM05D004563 ORTHO05D002944 3.1e-12 77.0 70 51.4
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 4.4e-11 73.2 159 35.2
Gohir.A10G031400 Gossypium hirsutum HOM05D004563 ORTHO05D002944 9.8e-11 72.0 73 45.2
CAN.G370.64 Capsicum annuum HOM05D014572 ORTHO05D016880 1.3e-10 71.6 142 34.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 1.7e-10 71.2 79 45.6
Gohir.D10G032200 Gossypium hirsutum HOM05D004563 ORTHO05D002944 2.2e-10 70.9 73 45.2
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 2.9e-10 70.5 63 49.2
Gorai.011G033900 Gossypium raimondii HOM05D004563 ORTHO05D002944 4.9e-10 69.7 73 43.8
Nitab4.5_0009762g0030 Nicotiana tabacum HOM05D014572 ORTHO05D016880 4.9e-10 69.7 355 25.6
Nitab4.5_0003322g0040 Nicotiana tabacum HOM05D014572 ORTHO05D016880 1.1e-09 68.6 361 23.5
Duzib192G1010 Durio zibethinus HOM05D004563 ORTHO05D017903 1.4e-09 68.2 69 47.8
Sopen02g021870 Solanum pennellii HOM05D014572 ORTHO05D016880 3.2e-09 67.0 138 30.4
Thecc.06G172300 Theobroma cacao HOM05D004563 ORTHO05D002944 4.1e-09 66.6 346 24.0
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.2e-08 65.1 63 47.6
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.6e-08 64.7 61 47.5
Solyc07g053320.4 Solanum lycopersicum HOM05D004563 ORTHO05D002944 1.6e-08 64.7 65 44.6
CSS0039922 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 2.0e-08 64.3 401 24.4
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 2.0e-08 64.3 65 44.6
CSS0028772 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 2.7e-08 63.9 74 41.9
Sopen07g027280 Solanum pennellii HOM05D004563 ORTHO05D002944 3.5e-08 63.5 65 43.1
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 3.5e-08 63.5 64 42.2
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.6e-08 63.2 65 41.5
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.6e-08 63.2 65 41.5
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 4.6e-08 63.2 65 41.5
Peaxi162Scf00261g01114 Petunia axillaris HOM05D014572 ORTHO05D016880 6.0e-08 62.8 332 26.2
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 1.0e-07 62.0 218 25.7
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 1.3e-07 61.6 115 30.4
CSS0011548 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 1.3e-07 61.6 396 24.0
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.3e-07 61.6 65 40.0
Atru.chr6.2814 Acer truncatum HOM05D004563 ORTHO05D002944 1.7e-07 61.2 144 28.5
Eucgr.A01904 Eucalyptus grandis HOM05D004563 ORTHO05D002944 1.7e-07 61.2 72 41.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 1.7e-07 61.2 274 23.4
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 2.3e-07 60.8 59 44.1
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 3.0e-07 60.5 86 37.2
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 5.0e-07 59.7 62 38.7
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 5.0e-07 59.7 80 38.8
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 5.0e-07 59.7 80 38.8
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 5.0e-07 59.7 78 39.7
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 5.0e-07 59.7 62 38.7
Solyc02g076940.2 Solanum lycopersicum HOM05D014572 ORTHO05D016880 5.0e-07 59.7 137 28.5
PGSC0003DMG400010210 Solanum tuberosum HOM05D014572 ORTHO05D016880 5.0e-07 59.7 363 23.1
PSO541G0319 Papaver somniferum HOM05D004563 ORTHO05D002944 6.6e-07 59.3 71 38.0
Peaxi162Scf00469g00139 Petunia axillaris HOM05D004563 ORTHO05D002944 6.6e-07 59.3 65 40.0
AT2G31130 Arabidopsis thaliana HOM05D004563 ORTHO05D002944 8.6e-07 58.9 62 38.7
CSS0022523 Camellia sinensis var. sinensis HOM05D014353 ORTHO05D002944 8.6e-07 58.9 157 31.2
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 8.6e-07 58.9 74 39.2
Migut.M01048 Erythranthe guttata HOM05D014353 ORTHO05D002944 8.6e-07 58.9 58 44.8
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 8.6e-07 58.9 56 46.4
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 8.6e-07 58.9 56 46.4
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 8.6e-07 58.9 56 46.4
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 8.6e-07 58.9 56 46.4
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 8.6e-07 58.9 90 36.7
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 8.6e-07 58.9 56 46.4
Sed0004710 Sechium edule HOM05D004563 ORTHO05D002944 8.6e-07 58.9 74 39.2
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 1.1e-06 58.5 64 39.1
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 1.1e-06 58.5 66 36.4
PSO675G1487 Papaver somniferum HOM05D004563 ORTHO05D002944 1.1e-06 58.5 56 41.1
SEGI_01253 Sequoiadendron giganteum HOM05D025414 ORTHO05D002944 1.1e-06 58.5 92 35.9
BraA04t17911Z Brassica rapa HOM05D004563 ORTHO05D002944 1.5e-06 58.2 95 32.6
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.5e-06 58.2 63 38.1
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 1.5e-06 58.2 58 43.1
QL05p046502 Quercus lobata HOM05D016724 ORTHO05D017903 1.5e-06 58.2 386 23.8
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 1.5e-06 58.2 63 38.1
THA.LOC104800862 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 1.5e-06 58.2 63 39.7
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 1.5e-06 58.2 61 41.0
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 1.9e-06 57.8 65 40.0
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 1.9e-06 57.8 64 39.1
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 2.5e-06 57.4 70 38.6
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 2.5e-06 57.4 61 44.3
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 2.5e-06 57.4 61 42.6
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 2.5e-06 57.4 59 40.7
Nitab4.5_0010797g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 2.5e-06 57.4 65 40.0
Phvul.005G096100 Phaseolus vulgaris HOM05D004563 ORTHO05D002944 2.5e-06 57.4 57 42.1
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 2.5e-06 57.4 64 39.1
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 3.3e-06 57.0 57 40.4
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 3.3e-06 57.0 112 33.0
Hund07832 Selenicereus undatus HOM05D004563 ORTHO05D002944 4.3e-06 56.6 103 29.1
Cc05_g08130 Coffea canephora HOM05D004563 ORTHO05D002944 5.6e-06 56.2 65 40.0
Thhalv10016698m.g Eutrema salsugineum HOM05D004563 ORTHO05D002944 5.6e-06 56.2 62 37.1
Oeu051114.4 Olea europaea HOM05D008023 ORTHO05D002944 5.6e-06 56.2 155 31.0
Glyma.18G179200 Glycine max HOM05D004563 ORTHO05D002944 7.3e-06 55.8 248 25.8
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 7.3e-06 55.8 61 45.9
Potri.011G065100 Populus trichocarpa HOM05D023908 ORTHO05D002944 7.3e-06 55.8 354 26.8
TWI59G1400 Tripterygium wilfordii HOM05D004563 ORTHO05D002944 7.3e-06 55.8 59 39.0
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 9.5e-06 55.5 60 38.3
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 9.5e-06 55.5 62 35.5
A04p23880 Brassica napus HOM05D004563 ORTHO05D002944 9.5e-06 55.5 270 24.8
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 9.5e-06 55.5 62 35.5
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 9.5e-06 55.5 62 35.5
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 9.5e-06 55.5 61 42.6
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 9.5e-06 55.5 61 39.3
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 9.5e-06 55.5 115 29.6
Sed0020403 Sechium edule HOM05D004563 ORTHO05D002944 9.5e-06 55.5 61 37.7
PGSC0003DMG400012394 Solanum tuberosum HOM05D018586 ORTHO05D002944 9.5e-06 55.5 77 39.0


User provided reference genes

Program Settings