Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 7.2e-281 969.9 492 100.0
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.9e-189 665.6 398 82.7
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 4.7e-187 658.3 491 71.7
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 7.9e-187 657.5 489 71.0
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 3.9e-186 655.2 484 71.5
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 8.8e-186 654.1 434 77.6
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 2.6e-185 652.5 481 73.0
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.3e-184 650.2 434 77.6
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 2.8e-184 649.0 485 71.5
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 1.1e-183 647.1 487 70.0
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.1e-183 647.1 422 78.9
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 5.3e-183 644.8 417 77.9
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 1.2e-182 643.7 386 83.4
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 2.0e-182 642.9 386 82.9
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 3.5e-182 642.1 434 76.0
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 3.5e-182 642.1 395 81.3
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 4.5e-182 641.7 405 78.8
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.7e-182 641.0 415 78.1
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 1.3e-181 640.2 404 79.7
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 2.9e-181 639.0 399 79.4
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 3.8e-181 638.6 455 73.2
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.1e-180 637.1 394 79.9
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 1.4e-180 636.7 407 78.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 7.2e-180 634.4 464 71.8
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 3.6e-179 632.1 444 72.1
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 1.4e-178 630.2 458 72.1
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.6e-177 625.9 421 75.1
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 3.3e-177 625.5 392 80.1
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 3.3e-177 625.5 417 76.3
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 3.3e-177 625.5 455 73.2
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 9.7e-177 624.0 392 79.8
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 1.3e-176 623.6 409 77.0
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.4e-175 620.2 417 75.3
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 1.4e-175 620.2 456 70.6
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 4.1e-175 618.6 485 67.4
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 9.1e-175 617.5 435 72.4
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.0e-173 614.0 392 78.8
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 1.3e-173 613.6 429 72.3
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.3e-173 613.6 394 77.9
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.8e-173 612.1 418 75.4
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 1.5e-172 610.1 416 75.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 1.9e-172 609.8 386 80.3
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 2.5e-172 609.4 414 74.6
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 7.2e-172 607.8 393 77.9
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 2.1e-171 606.3 416 74.8
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 2.7e-171 605.9 381 79.3
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 2.7e-171 605.9 541 62.3
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 1.8e-170 603.2 453 70.2
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 3.0e-170 602.4 395 77.7
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 8.8e-170 600.9 408 75.0
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.0e-169 599.7 487 67.6
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 2.0e-169 599.7 466 68.9
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 9.7e-169 597.4 428 72.2
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 2.2e-168 596.3 430 72.1
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 8.3e-168 594.3 398 75.9
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 4.1e-167 592.0 386 76.9
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 4.1e-167 592.0 443 69.8
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 9.1e-167 590.9 461 68.3
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 4.5e-166 588.6 472 66.9
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 5.9e-166 588.2 621 56.0
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 2.9e-165 585.9 420 71.9
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 4.2e-164 582.0 455 68.8
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 5.5e-164 581.6 394 75.6
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 1.6e-163 580.1 381 77.7
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 3.7e-160 568.9 395 74.2
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 6.3e-160 568.2 519 60.9
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 2.4e-159 566.2 407 72.0
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 1.0e-157 560.8 402 71.9
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 5.0e-157 558.5 406 72.2
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 7.2e-156 554.7 361 77.0
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 7.2e-156 554.7 460 66.1
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 7.5e-153 544.7 458 64.8
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 9.8e-153 544.3 452 64.8
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 7.8e-150 534.6 403 67.5
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 3.1e-146 522.7 347 77.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.2e-145 520.8 434 63.8
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.6e-145 519.6 428 64.7
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 2.2e-144 516.5 447 62.9
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 1.9e-143 513.5 386 66.6
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 6.0e-142 508.4 435 65.7
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 7.8e-142 508.1 456 62.3
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 6.6e-141 505.0 398 66.8
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 2.5e-140 503.1 358 72.1
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 5.6e-140 501.9 491 57.2
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 7.3e-140 501.5 408 65.4
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.2e-139 498.4 466 62.2
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.1e-138 497.7 410 64.9
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.2e-137 494.2 391 66.2
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 3.1e-130 469.5 303 77.6
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 1.8e-122 443.7 351 67.8
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 7.6e-121 438.3 392 64.0
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 2.2e-112 410.2 401 53.9
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.4e-111 407.5 257 79.4
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 1.0e-109 401.4 395 53.4
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 6.6e-109 398.7 306 72.2
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 2.4e-106 390.2 463 48.6
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 2.1e-102 377.1 270 71.1
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 1.7e-88 330.9 203 78.8
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 2.9e-88 330.1 218 80.3
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.5e-84 317.0 287 64.8
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.8e-83 312.8 278 65.5
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.1e-78 297.4 185 79.5
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.8e-77 294.3 185 77.8
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 8.8e-77 292.0 539 37.5
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 1.1e-76 291.6 218 72.5
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 3.7e-75 286.6 183 78.1
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 4.1e-66 256.5 155 80.6
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 2.0e-65 254.2 185 69.2
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 1.5e-63 248.1 146 84.2
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 9.4e-63 245.4 158 79.7
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 2.1e-62 244.2 325 47.7
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 8.8e-61 238.8 202 66.3
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.8e-58 231.1 137 82.5
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.6e-57 228.0 264 54.5
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.6e-57 228.0 264 54.5
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.6e-57 228.0 264 54.5
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.0e-56 225.3 176 69.3
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 1.2e-54 218.4 270 54.4
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.7e-54 216.5 162 64.8
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 8.8e-45 185.7 129 71.3
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 2.8e-43 180.6 119 73.9
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 1.6e-41 174.9 148 64.9
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 3.8e-40 170.2 131 73.3
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 1.2e-36 158.7 145 60.0
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 2.4e-34 151.0 84 89.3
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 1.6e-33 148.3 92 78.3
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 1.1e-26 125.6 89 75.3
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.4e-26 124.4 74 75.7
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 4.1e-26 123.6 89 74.2
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.0e-24 119.0 125 56.0
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 3.3e-23 114.0 78 74.4
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 4.0e-21 107.1 177 41.2
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 1.7e-19 101.7 62 75.8
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 4.1e-18 97.1 86 58.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 5.1e-16 90.1 160 38.1
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 4.7e-14 83.6 54 74.1
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 2.4e-10 71.2 73 50.7
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 3.3e-07 60.8 132 34.8


User provided reference genes

Program Settings