Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 2.6e-78 295.4 160 100.0
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 6.6e-42 174.5 143 70.6
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.9e-41 172.9 143 69.9
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 2.5e-41 172.6 160 63.8
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.6e-40 168.7 161 65.2
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 9.0e-39 164.1 161 62.7
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 1.2e-38 163.7 162 62.3
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 4.9e-37 158.3 163 62.6
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 1.9e-36 156.4 159 59.7
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 5.4e-36 154.8 161 64.0
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 2.1e-35 152.9 143 67.1
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 7.8e-35 151.0 153 62.1
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.0e-34 150.6 160 62.5
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 2.3e-34 149.4 151 62.3
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.3e-34 149.4 145 66.2
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 2.3e-34 149.4 151 63.6
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 3.0e-34 149.1 162 59.9
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 3.9e-34 148.7 151 62.9
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 3.9e-34 148.7 160 60.0
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 5.1e-34 148.3 145 66.9
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 5.1e-34 148.3 145 66.9
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 6.6e-34 147.9 146 66.4
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 6.6e-34 147.9 144 66.7
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 8.7e-34 147.5 145 65.5
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.9e-33 146.4 144 66.7
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.5e-33 146.0 151 62.9
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 3.3e-33 145.6 146 67.1
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 3.3e-33 145.6 146 67.1
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 5.6e-33 144.8 146 65.8
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 7.3e-33 144.4 145 66.9
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 7.3e-33 144.4 146 65.8
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 7.3e-33 144.4 141 63.8
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 9.6e-33 144.1 142 63.4
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 9.6e-33 144.1 142 63.4
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 9.6e-33 144.1 148 62.8
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.3e-32 143.7 141 63.8
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 1.3e-32 143.7 108 73.1
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 1.6e-32 143.3 144 65.3
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.6e-32 143.3 145 64.8
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 2.1e-32 142.9 153 60.8
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 2.1e-32 142.9 160 61.2
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 3.6e-32 142.1 143 66.4
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 8.1e-32 141.0 144 63.9
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.1e-32 141.0 141 62.4
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 8.1e-32 141.0 162 59.9
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 1.1e-31 140.6 140 64.3
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 1.1e-31 140.6 142 66.9
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 1.1e-31 140.6 142 66.9
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 1.1e-31 140.6 142 66.9
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 1.4e-31 140.2 140 61.4
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 1.8e-31 139.8 167 60.5
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.4e-31 139.4 140 65.0
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 3.1e-31 139.0 159 60.4
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 3.1e-31 139.0 160 60.6
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 5.3e-31 138.3 163 62.6
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 5.3e-31 138.3 143 65.0
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 6.9e-31 137.9 160 60.0
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 6.9e-31 137.9 160 60.0
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 9.0e-31 137.5 141 61.0
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 1.2e-30 137.1 144 61.8
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 2.6e-30 136.0 167 58.7
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 2.6e-30 136.0 151 62.3
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 2.6e-30 136.0 160 58.1
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 3.4e-30 135.6 138 64.5
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 4.5e-30 135.2 140 60.7
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 4.5e-30 135.2 140 61.4
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 1.7e-29 133.3 146 60.3
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 1.7e-29 133.3 162 58.0
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 2.2e-29 132.9 140 62.1
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 2.9e-29 132.5 166 54.2
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 2.9e-29 132.5 160 58.8
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 4.9e-29 131.7 160 58.1
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 8.4e-29 131.0 143 62.2
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 3.2e-28 129.0 111 68.5
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 4.2e-28 128.6 161 57.1
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 4.2e-28 128.6 159 52.8
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 7.1e-28 127.9 148 57.4
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 9.3e-28 127.5 158 58.2
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 9.3e-28 127.5 159 57.2
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.3e-28 127.5 153 59.5
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 9.3e-28 127.5 153 59.5
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 1.2e-27 127.1 148 57.4
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.6e-27 126.7 158 57.0
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.6e-27 126.7 158 55.7
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 7.9e-27 124.4 158 54.4
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 1.8e-26 123.2 140 57.1
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 2.3e-26 122.9 139 59.0
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 3.9e-26 122.1 157 58.0
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 5.1e-26 121.7 157 57.3
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 2.5e-25 119.4 144 61.1
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 7.4e-25 117.9 157 55.4
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 1.3e-24 117.1 160 55.0
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 2.1e-24 116.3 177 50.8
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 8.1e-24 114.4 147 55.1
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 1.8e-23 113.2 137 58.4
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 1.8e-23 113.2 157 52.2
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 2.4e-23 112.8 151 53.6
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 4.0e-23 112.1 148 52.7
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 6.9e-23 111.3 146 51.4
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 1.5e-22 110.2 126 60.3
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 1.5e-22 110.2 146 56.8
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 3.4e-22 109.0 162 51.2
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 4.5e-22 108.6 157 52.2
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 7.6e-22 107.8 144 56.2
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 9.9e-22 107.5 78 74.4
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.7e-21 106.7 86 67.4
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 1.4e-20 103.6 161 50.3
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 1.9e-20 103.2 147 52.4
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 7.1e-20 101.3 108 62.0
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.2e-19 100.5 80 65.0
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 1.0e-18 97.4 89 66.3
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 2.3e-18 96.3 112 58.0
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 1.1e-17 94.0 68 75.0
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 5.6e-17 91.7 59 81.4
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 5.6e-17 91.7 66 74.2
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 2.1e-16 89.7 102 53.9
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.8e-16 89.4 158 45.6
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 2.8e-16 89.4 158 45.6
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 5.3e-15 85.1 159 41.5
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 1.2e-14 84.0 131 51.9
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 2.0e-14 83.2 118 52.5
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 1.7e-13 80.1 138 47.8
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 9.3e-12 74.3 120 48.3
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 1.2e-11 73.9 126 47.6
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.0e-10 70.9 132 42.4
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 5.1e-10 68.6 138 41.3
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.2e-06 57.4 97 45.4
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 7.7e-06 54.7 46 60.9


User provided reference genes

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