Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 0.0e+00 1117.4 555 100.0
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 3.3e-250 868.2 558 79.0
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.4e-248 862.1 559 78.2
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.6e-247 859.4 557 77.6
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 5.5e-245 850.9 556 77.2
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 9.4e-245 850.1 550 76.2
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 2.1e-244 849.0 555 77.3
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.8e-243 845.9 557 77.0
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 1.5e-242 842.8 558 77.1
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 2.0e-242 842.4 558 76.0
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 5.7e-242 840.9 557 76.1
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 7.5e-242 840.5 560 76.4
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 8.2e-241 837.0 557 76.1
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.2e-241 837.0 568 75.5
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.8e-240 835.9 562 73.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 3.1e-240 835.1 557 75.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.2e-239 833.2 553 76.1
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 4.5e-239 831.2 552 75.2
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.0e-235 820.1 551 73.3
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.4e-234 814.7 566 73.7
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 1.4e-232 809.7 570 71.1
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 5.0e-230 801.2 559 74.2
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.5e-229 799.7 567 70.9
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 2.5e-229 798.9 559 71.7
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 5.5e-229 797.7 567 70.5
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.1e-228 795.8 571 70.1
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.0e-227 793.5 567 70.4
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 1.8e-227 792.7 566 70.1
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 8.8e-227 790.4 554 72.4
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 8.8e-227 790.4 566 72.3
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.4e-226 788.5 552 72.8
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 3.4e-226 788.5 563 70.7
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.3e-225 786.6 552 73.2
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 2.4e-224 782.3 553 72.9
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 5.4e-224 781.2 497 78.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 5.4e-224 781.2 561 70.4
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-223 779.6 564 69.0
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.0e-223 779.2 561 70.4
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.9e-223 777.7 556 70.9
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.0e-222 776.9 559 71.2
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 3.8e-222 775.0 559 70.3
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.6e-222 774.2 557 70.4
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.6e-222 774.2 557 70.4
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 2.5e-221 772.3 554 70.2
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 2.5e-221 772.3 560 69.3
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-219 766.9 551 70.8
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 4.0e-219 765.0 565 69.2
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.5e-218 763.1 549 69.8
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 2.6e-218 762.3 554 69.5
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.9e-217 758.8 541 69.3
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-217 758.4 574 67.4
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 3.7e-217 758.4 579 66.8
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 3.7e-217 758.4 579 66.8
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.9e-217 758.1 579 67.0
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 1.8e-216 756.1 581 66.6
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 7.0e-216 754.2 579 66.7
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.7e-215 752.3 558 68.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.8e-215 750.7 578 66.4
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 6.6e-214 747.7 560 70.5
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.9e-213 746.1 575 66.3
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 3.3e-213 745.3 554 67.1
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.6e-213 744.6 577 65.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 5.6e-213 744.6 560 70.2
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 5.2e-211 738.0 574 66.6
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.2e-210 736.9 575 65.9
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 2.0e-210 736.1 573 65.3
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 4.9e-209 731.5 553 66.2
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 4.1e-208 728.4 450 78.7
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 1.6e-207 726.5 563 66.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 2.7e-207 725.7 558 66.1
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 6.0e-207 724.5 572 64.9
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.0e-206 723.8 554 66.2
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 2.3e-206 722.6 577 64.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 6.6e-206 721.1 548 66.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 7.3e-205 717.6 574 63.8
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 4.7e-204 714.9 560 63.0
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 8.1e-204 714.1 568 63.6
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.1e-203 713.8 560 65.7
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 3.1e-203 712.2 563 64.1
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 4.4e-202 708.4 563 63.9
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 5.8e-202 708.0 559 66.4
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 3.7e-201 705.3 573 63.4
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 3.7e-201 705.3 563 63.8
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 8.3e-201 704.1 563 63.6
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.1e-200 701.8 563 65.2
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 5.4e-200 701.4 570 61.6
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.1e-199 699.5 563 62.5
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 8.6e-198 694.1 556 62.9
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 3.3e-197 692.2 571 62.0
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 3.6e-196 688.7 553 62.6
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-195 686.8 577 61.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 5.8e-194 681.4 556 62.1
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.8e-193 678.7 439 74.3
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.1e-192 677.2 559 62.4
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.4e-192 676.8 563 62.2
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 1.9e-192 676.4 558 61.3
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 3.2e-192 675.6 583 62.1
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.6e-191 673.3 567 61.7
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 7.8e-191 671.0 450 75.8
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 3.9e-190 668.7 576 61.1
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.1e-190 668.3 561 61.5
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 3.3e-189 665.6 559 60.6
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.1e-187 660.6 553 64.9
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 4.0e-187 658.7 575 58.6
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-186 657.1 561 64.2
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.6e-186 656.0 399 78.4
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 7.6e-186 654.4 560 59.5
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 9.9e-186 654.1 452 69.0
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 4.2e-184 648.7 557 60.7
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 7.8e-183 644.4 563 57.7
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-181 640.2 540 61.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.3e-181 638.6 557 61.0
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 5.6e-181 638.3 571 59.5
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 5.3e-179 631.7 567 58.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-172 608.6 401 72.3
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 5.3e-171 605.1 338 84.9
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 6.9e-171 604.7 583 54.0
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.9e-169 598.6 563 56.5
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.5e-168 595.1 551 57.7
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.6e-167 593.6 544 58.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 3.0e-166 589.3 384 72.7
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.5e-153 545.0 303 84.2
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 3.2e-152 542.7 517 54.0
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 5.5e-152 542.0 561 52.4
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.6e-141 506.5 480 57.3
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 1.2e-130 471.1 452 47.1
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 1.9e-112 410.6 392 56.4
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.1e-111 407.1 333 68.2
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.3e-104 382.9 380 45.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.2e-103 381.3 504 46.4
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.3e-97 361.3 197 84.8
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.4e-93 346.7 390 50.0
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 9.2e-91 338.6 357 52.4
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.3e-89 334.0 296 58.8
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.1e-87 327.4 210 70.5
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 7.3e-72 275.8 155 81.9
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 2.5e-64 250.8 204 61.3
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 4.9e-60 236.5 288 52.4
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 9.3e-59 232.3 210 62.9
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.8e-55 219.9 181 68.5
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.0e-44 185.7 279 43.0
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-35 155.2 91 79.1
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.2e-34 152.1 91 78.0
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 4.1e-30 137.1 502 25.3
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 2.7e-26 124.4 79 74.7
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 1.1e-24 119.0 115 51.3
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 5.7e-24 116.7 69 78.3
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 2.2e-23 114.8 69 76.8
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-22 112.1 69 75.4
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.8e-20 104.0 152 44.1
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 1.5e-19 102.1 180 32.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 2.6e-16 91.3 126 43.7
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.7e-15 88.6 80 61.2
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 1.7e-15 88.6 73 57.5
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.8e-15 87.8 51 80.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.5e-08 65.5 60 56.7
Nitab4.5_0001302g0060 Nicotiana tabacum HOM05D004704 ORTHO05D005384 7.0e-06 56.6 37 64.9


User provided reference genes

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