Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14340 Coffea canephora HOM05D003129 ORTHO05D016405 1.6e-45 185.7 91 100.0
Cc00_g29620 Coffea canephora HOM05D003129 ORTHO05D026744 1.3e-42 176.0 89 95.5
Solyc10g008800.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 2.4e-36 155.2 85 88.2
Sopen10g004580 Solanum pennellii HOM05D003129 ORTHO05D004326 2.4e-36 155.2 85 88.2
Dinv40631 Davidia involucrata HOM05D003129 ORTHO05D004326 9.9e-35 149.8 85 83.5
Lj2A294T71 Lonicera japonica HOM05D003129 ORTHO05D004326 1.7e-34 149.1 85 82.4
TAR627G0274 Trochodendron aralioides HOM05D003129 ORTHO05D004326 2.2e-34 148.7 85 82.4
Migut.M01074 Erythranthe guttata HOM05D003129 ORTHO05D004326 2.9e-34 148.3 88 78.4
Nitab4.5_0002114g0030 Nicotiana tabacum HOM05D003129 ORTHO05D004326 2.9e-34 148.3 79 88.6
Peaxi162Scf00269g00314 Petunia axillaris HOM05D003129 ORTHO05D004326 3.8e-34 147.9 80 87.5
Hma1.2p1_0155F.1_g068510 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 6.4e-34 147.1 85 81.2
MSTRG.15833 Avicennia marina HOM05D003129 ORTHO05D004326 8.4e-34 146.7 88 76.1
Nn1g04301 Nelumbo nucifera HOM05D003129 ORTHO05D004326 1.1e-33 146.4 85 80.0
GSVIVG01021154001 Vitis vinifera HOM05D003129 ORTHO05D004326 1.4e-33 146.0 85 81.2
Dinv17376 Davidia involucrata HOM05D003129 ORTHO05D004326 3.2e-33 144.8 85 81.2
HanXRQChr04g0117191 Helianthus annuus HOM05D003129 ORTHO05D004326 5.5e-33 144.1 85 80.0
HanXRQChr15g0481311 Helianthus annuus HOM05D003129 ORTHO05D004326 5.5e-33 144.1 85 80.0
Lsat_1_v5_gn_4_50661 Lactuca sativa HOM05D003129 ORTHO05D004326 5.5e-33 144.1 85 81.2
SalBow8G3208 Salvia bowleyana HOM05D003129 ORTHO05D004326 5.5e-33 144.1 83 81.9
Duzib192G0848 Durio zibethinus HOM05D003129 ORTHO05D004326 7.1e-33 143.7 83 84.3
TAR624G0766 Trochodendron aralioides HOM05D003129 ORTHO05D004326 9.3e-33 143.3 85 80.0
Gohir.A10G029400 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.2e-32 142.9 85 81.2
Gohir.D10G029900 Gossypium hirsutum HOM05D003129 ORTHO05D004326 1.2e-32 142.9 85 81.2
Gorai.011G031800 Gossypium raimondii HOM05D003129 ORTHO05D004326 1.2e-32 142.9 85 81.2
Hma1.2p1_0608F.1_g188220 Hydrangea macrophylla HOM05D003129 ORTHO05D004326 1.2e-32 142.9 85 78.8
Nn1g06337 Nelumbo nucifera HOM05D003129 ORTHO05D004326 1.2e-32 142.9 85 78.8
COL.COLO4_31382 Corchorus olitorius HOM05D003129 ORTHO05D004326 1.6e-32 142.5 85 81.2
ECA236G4078 Erigeron canadensis HOM05D003129 ORTHO05D004326 1.6e-32 142.5 85 78.8
Duzib235G0248 Durio zibethinus HOM05D003129 ORTHO05D004326 2.1e-32 142.1 83 83.1
vmacro15954 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 2.1e-32 142.1 81 85.2
Sc05g0007260 Simmondsia chinensis HOM05D003129 ORTHO05D004326 2.7e-32 141.7 85 76.5
Thecc.06G176900 Theobroma cacao HOM05D003129 ORTHO05D004326 2.7e-32 141.7 85 80.0
GSVIVG01014247001 Vitis vinifera HOM05D003129 ORTHO05D004326 3.5e-32 141.4 85 76.5
Aqoxy1G02212 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 4.6e-32 141.0 85 76.5
Gohir.D06G208800 Gossypium hirsutum HOM05D003129 ORTHO05D004326 4.6e-32 141.0 85 80.0
Gorai.010G242700 Gossypium raimondii HOM05D003129 ORTHO05D004326 4.6e-32 141.0 85 80.0
Rhsim02G0138500 Rhododendron simsii HOM05D003129 ORTHO05D004326 2.3e-31 138.7 102 71.6
HanXRQChr11g0327221 Helianthus annuus HOM05D003129 ORTHO05D004326 3.9e-31 137.9 81 80.2
Manes.17G052000 Manihot esculenta HOM05D003129 ORTHO05D004326 3.9e-31 137.9 85 76.5
CANSAT35G1487 Cannabis sativa HOM05D003129 ORTHO05D004326 6.7e-31 137.1 85 76.5
CiPaw.09G066600 Carya illinoinensis HOM05D003129 ORTHO05D004326 6.7e-31 137.1 85 76.5
Ciclev10014801m.g Citrus clementina HOM05D003129 ORTHO05D004326 8.7e-31 136.7 85 77.6
Gohir.A06G200950 Gossypium hirsutum HOM05D003129 ORTHO05D004326 8.7e-31 136.7 85 78.8
Gohir.A06G201000 Gossypium hirsutum HOM05D003129 ORTHO05D004326 8.7e-31 136.7 85 78.8
Oeu043093.1 Olea europaea HOM05D003129 ORTHO05D004326 1.5e-30 136.0 76 81.6
Oeu062329.1 Olea europaea HOM05D003129 ORTHO05D004326 1.5e-30 136.0 80 77.5
Atru.chr10.1742 Acer truncatum HOM05D003129 ORTHO05D004326 1.9e-30 135.6 85 76.5
Prupe.4G056400 Prunus persica HOM05D003129 ORTHO05D004326 1.9e-30 135.6 88 73.9
Cfa000558 Carpinus fangiana HOM05D003129 ORTHO05D004326 2.5e-30 135.2 81 79.0
ClCG01G023490 Citrullus lanatus HOM05D003129 ORTHO05D004326 4.3e-30 134.4 85 76.5
MELO3C007237.2 Cucumis melo HOM05D003129 ORTHO05D004326 4.3e-30 134.4 85 76.5
CsaV3_6G050610 Cucumis sativus L. HOM05D003129 ORTHO05D004326 4.3e-30 134.4 85 76.5
FAN11G2423 Fragaria x ananassa HOM05D003129 ORTHO05D004326 4.3e-30 134.4 86 74.4
FAN25G1535 Fragaria x ananassa HOM05D003129 ORTHO05D004326 4.3e-30 134.4 86 74.4
CiPaw.10G055300 Carya illinoinensis HOM05D003129 ORTHO05D004326 5.6e-30 134.0 85 75.3
Actinidia18785 Actinidia chinensis HOM05D003129 ORTHO05D004326 7.4e-30 133.7 85 74.1
Aa31LG9G13850 Aethionema arabicum HOM05D003129 ORTHO05D004326 7.4e-30 133.7 85 74.1
Dinv14957 Davidia involucrata HOM05D003129 ORTHO05D004326 9.6e-30 133.3 85 75.3
FvH4_3g08240 Fragaria vesca HOM05D003129 ORTHO05D004326 9.6e-30 133.3 88 71.6
Potri.004G052300 Populus trichocarpa HOM05D003129 ORTHO05D004326 9.6e-30 133.3 81 79.0
Potri.011G062500 Populus trichocarpa HOM05D003129 ORTHO05D004326 9.6e-30 133.3 81 79.0
RcHm_v2.0_Chr5g0009911 Rosa chinensis HOM05D003129 ORTHO05D004326 9.6e-30 133.3 88 71.6
TWI63G0550 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 9.6e-30 133.3 85 74.1
PGR004G1912 Punica granatum HOM05D003129 ORTHO05D004326 1.3e-29 132.9 85 75.3
ATR0602G129 Amborella trichopoda HOM05D003129 ORTHO05D004326 1.6e-29 132.5 85 72.9
CDE02G2353 Ceratophyllum demersum HOM05D003129 ORTHO05D004326 1.6e-29 132.5 85 74.1
FAN21G0899 Fragaria x ananassa HOM05D003129 ORTHO05D004326 2.1e-29 132.1 86 72.1
Rhsim04G0023800 Rhododendron simsii HOM05D003129 ORTHO05D004326 2.1e-29 132.1 85 72.9
Sed0018741 Sechium edule HOM05D003129 ORTHO05D004326 2.1e-29 132.1 85 76.5
Aqoxy4G00539 Aquilegia oxysepala HOM05D003129 ORTHO05D004326 3.7e-29 131.3 87 70.1
Cpa.g.sc7.28 Carica papaya HOM05D003129 ORTHO05D004326 3.7e-29 131.3 85 74.1
TWI38G0456 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 3.7e-29 131.3 85 74.1
ECA234G1267 Erigeron canadensis HOM05D003129 ORTHO05D004326 6.2e-29 130.6 85 72.9
Eucgr.D00571 Eucalyptus grandis HOM05D003129 ORTHO05D004326 8.2e-29 130.2 85 72.9
MD05G1306200 Malus domestica HOM05D003129 ORTHO05D004326 8.2e-29 130.2 88 70.5
MD10G1285200 Malus domestica HOM05D003129 ORTHO05D004326 8.2e-29 130.2 88 70.5
arahy.Tifrunner.gnm1.ann1.32PFVB Arachis hypogaea HOM05D003129 ORTHO05D004326 1.4e-28 129.4 85 71.8
arahy.Tifrunner.gnm1.ann1.X0U75U Arachis hypogaea HOM05D003129 ORTHO05D004326 1.4e-28 129.4 85 71.8
Glyma.13G172200 Glycine max HOM05D003129 ORTHO05D004326 1.4e-28 129.4 85 71.8
Phvul.003G057200 Phaseolus vulgaris HOM05D003129 ORTHO05D004326 1.4e-28 129.4 85 71.8
VMungo0251G0702 Vigna mungo HOM05D003129 ORTHO05D004326 1.4e-28 129.4 85 71.8
Ah.10g033800 Amaranthus hybridus HOM05D003129 ORTHO05D004326 1.8e-28 129.0 85 72.9
FAN16G1697 Fragaria x ananassa HOM05D003129 ORTHO05D004326 1.8e-28 129.0 86 72.1
MBI07_g06431_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D000022 1.8e-28 129.0 81 72.8
TWI38G1536 Tripterygium wilfordii HOM05D003129 ORTHO05D004326 1.8e-28 129.0 85 72.9
PSO541G6176 Papaver somniferum HOM05D003129 ORTHO05D004326 2.4e-28 128.6 85 70.6
PSO675G6268 Papaver somniferum HOM05D003129 ORTHO05D004326 2.4e-28 128.6 85 70.6
THA.LOC104814245 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 4.0e-28 127.9 85 71.8
Lj1C835G5 Lonicera japonica HOM05D003129 ORTHO05D004326 5.3e-28 127.5 85 71.8
Lalb_Chr09g0327941 Lupinus albus HOM05D003129 ORTHO05D004326 5.3e-28 127.5 85 71.8
THA.LOC104812630 Tarenaya hassleriana HOM05D003129 ORTHO05D004326 9.0e-28 126.7 85 70.6
Glyma.07G203600 Glycine max HOM05D003129 ORTHO05D004326 1.2e-27 126.3 85 70.6
Sp4g16390 Schrenkiella parvula HOM05D003129 ORTHO05D004326 1.2e-27 126.3 85 69.4
Sed0013050 Sechium edule HOM05D003129 ORTHO05D004326 1.2e-27 126.3 85 70.6
BcaB01g03907 Brassica carinata HOM05D003129 ORTHO05D004326 1.5e-27 125.9 85 69.4
BcaC01g05811 Brassica carinata HOM05D003129 ORTHO05D004326 1.5e-27 125.9 85 69.4
C03p22160 Brassica napus HOM05D003129 ORTHO05D004326 1.5e-27 125.9 85 69.4
BolC3t14601H Brassica oleracea HOM05D003129 ORTHO05D004326 1.5e-27 125.9 85 69.4
BraA03t11158Z Brassica rapa HOM05D003129 ORTHO05D004326 1.5e-27 125.9 85 69.4
DCAR_019584 Daucus carota HOM05D003129 ORTHO05D004326 1.5e-27 125.9 88 67.0
AL4G29920 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 2.0e-27 125.6 85 68.2
Carub.0004s1567 Capsella rubella HOM05D003129 ORTHO05D004326 2.0e-27 125.6 85 69.4
Aa31LG6G11500 Aethionema arabicum HOM05D003129 ORTHO05D004326 2.6e-27 125.2 82 73.2
Lalb_Chr05g0218661 Lupinus albus HOM05D003129 ORTHO05D004326 2.6e-27 125.2 85 70.6
A03p19000 Brassica napus HOM05D003129 ORTHO05D004326 3.4e-27 124.8 85 68.2
CAN.G1119.14 Capsicum annuum HOM05D003129 ORTHO05D004326 3.4e-27 124.8 85 69.4
Mapoly0091s0056 Marchantia polymorpha HOM05D003129 ORTHO05D004326 3.4e-27 124.8 85 64.7
Thhalv10016466m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 4.5e-27 124.4 85 68.2
Pp3c3_22040 Physcomitrium patens HOM05D003129 ORTHO05D004326 4.5e-27 124.4 81 67.9
SGA_v2.0_scaffold66G22240 Striga asiatica HOM05D003129 ORTHO05D004326 4.5e-27 124.4 108 60.2
CARHR128120 Cardamine hirsuta HOM05D003129 ORTHO05D004326 7.6e-27 123.6 85 67.1
Lj4g0011162 Lotus japonicus HOM05D003129 ORTHO05D004326 7.6e-27 123.6 85 67.1
MSTRG.14212 Avicennia marina HOM05D003129 ORTHO05D004326 1.7e-26 122.5 85 69.4
Solyc10g007150.4 Solanum lycopersicum HOM05D003129 ORTHO05D004326 2.9e-26 121.7 85 69.4
Sopen10g003050 Solanum pennellii HOM05D003129 ORTHO05D004326 2.9e-26 121.7 85 69.4
AT2G34040 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 4.9e-26 120.9 85 65.9
C04p15070 Brassica napus HOM05D003129 ORTHO05D004326 4.9e-26 120.9 85 65.9
Ca_26044_v3 Cicer arietinum L. HOM05D003129 ORTHO05D004326 4.9e-26 120.9 87 64.4
SHI34908 Sapria himalayana HOM05D003129 ORTHO05D004326 4.9e-26 120.9 86 65.1
SGA_v2.0_scaffold130G34337 Striga asiatica HOM05D003129 ORTHO05D004326 6.5e-26 120.6 85 69.4
HPP92_002946 Vanilla planifolia HOM05D003129 ORTHO05D004326 6.5e-26 120.6 85 64.7
Thhalv10007287m.g Eutrema salsugineum HOM05D003129 ORTHO05D004326 1.1e-25 119.8 85 67.1
BolC4t23083H Brassica oleracea HOM05D003129 ORTHO05D004326 1.4e-25 119.4 85 64.7
Peaxi162Scf00027g00106 Petunia axillaris HOM05D003129 ORTHO05D004326 1.9e-25 119.0 88 64.8
Cc05_g11500 Coffea canephora HOM05D003129 ORTHO05D004326 2.5e-25 118.6 80 70.0
unitig_52.g17399 Utricularia gibba HOM05D003129 ORTHO05D004326 2.5e-25 118.6 85 67.1
Migut.H01970 Erythranthe guttata HOM05D003129 ORTHO05D004326 3.2e-25 118.2 85 67.1
SalBow7G0623 Salvia bowleyana HOM05D003129 ORTHO05D004326 7.1e-25 117.1 85 64.7
SalBow7G1178 Salvia bowleyana HOM05D003129 ORTHO05D004326 7.1e-25 117.1 85 64.7
SMO364G0322 Selaginella moellendorffii HOM05D003129 ORTHO05D004326 7.1e-25 117.1 85 60.0
unitig_0.g2268 Utricularia gibba HOM05D003129 ORTHO05D004326 9.3e-25 116.7 85 67.1
Psat7g118240 Pisum sativum HOM05D003129 ORTHO05D004326 1.2e-24 116.3 90 62.2
unitig_699.g19233 Utricularia gibba HOM05D003129 ORTHO05D004326 2.1e-24 115.5 85 67.1
Carub.0001s2722 Capsella rubella HOM05D003129 ORTHO05D004326 2.7e-24 115.2 85 65.9
Sp1g24960 Schrenkiella parvula HOM05D003129 ORTHO05D004326 2.7e-24 115.2 85 64.7
vmacro09507 Vaccinium macrocarpon HOM05D003129 ORTHO05D004326 2.7e-24 115.2 129 48.8
Zm00001eb203280 Zea mays HOM05D003129 ORTHO05D004326 2.7e-24 115.2 85 64.7
Zm00001eb235260 Zea mays HOM05D003129 ORTHO05D004326 2.7e-24 115.2 84 65.5
Medtr4g087935 Medicago truncatula HOM05D003129 ORTHO05D004326 3.5e-24 114.8 77 68.8
AL1G42740 Arabidopsis lyrata HOM05D003129 ORTHO05D004326 4.6e-24 114.4 85 65.9
SGA_v2.0_scaffold70G23706 Striga asiatica HOM05D003129 ORTHO05D004326 4.6e-24 114.4 105 57.1
Os02g0313400 Oryza sativa ssp. japonica HOM05D003129 ORTHO05D004326 1.3e-23 112.8 85 62.4
EL10Ac8g20476 Beta vulgaris HOM05D003129 ORTHO05D004326 1.8e-23 112.5 120 50.8
AagrBONN_evm.TU.Sc2ySwM_228.5751 Anthoceros agrestis HOM05D003129 ORTHO05D004326 3.0e-23 111.7 88 58.0
CSS0027425 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 4.8e-21 104.4 61 82.0
CARHR028240 Cardamine hirsuta HOM05D003129 ORTHO05D004326 4.8e-21 104.4 84 63.1
CSS0050257 Camellia sinensis var. sinensis HOM05D003129 ORTHO05D004326 1.2e-19 99.8 58 82.8
RcHm_v2.0_Chr1g0362691 Rosa chinensis HOM05D003129 ORTHO05D004326 2.2e-18 95.5 85 57.6
CAN.G361.6 Capsicum annuum HOM05D003129 ORTHO05D004326 6.5e-18 94.0 50 84.0
Carub.0003s1933 Capsella rubella HOM05D003129 ORTHO05D014420 1.9e-17 92.4 85 54.1
CBR_g34638 Chara braunii HOM05D003129 ORTHO05D004326 1.9e-17 92.4 87 49.4
BcaC05g26915 Brassica carinata HOM05D003129 ORTHO05D016405 9.3e-17 90.1 85 54.1
AT1G29030 Arabidopsis thaliana HOM05D003129 ORTHO05D004326 1.2e-16 89.7 61 70.5
C05p27700 Brassica napus HOM05D003129 ORTHO05D016405 3.6e-16 88.2 84 53.6
BolC5t31490H Brassica oleracea HOM05D003129 ORTHO05D016405 3.6e-16 88.2 84 53.6
AT1G23935 Arabidopsis thaliana HOM05D000929 ORTHO05D038725 4.6e-16 87.8 85 50.6
TPR.G16267 Trifolium pratense HOM05D003129 ORTHO05D004326 4.6e-16 87.8 58 69.0
AL1G37660 Arabidopsis lyrata HOM05D003129 ORTHO05D038725 7.9e-16 87.0 83 50.6
Sabra04G0033100 Salix brachista HOM05D003129 ORTHO05D004326 1.1e-14 83.2 82 57.3
Atru.chr12.904 Acer truncatum HOM05D003129 ORTHO05D016405 1.9e-14 82.4 71 54.9
Sabra11G0044300 Salix brachista HOM05D003129 ORTHO05D004326 3.3e-14 81.6 81 56.8
Actinidia35228 Actinidia chinensis HOM05D003129 ORTHO05D004326 4.3e-14 81.3 49 71.4
Sabra04G0033600 Salix brachista HOM05D003129 ORTHO05D004326 5.7e-14 80.9 82 56.1
Hund21191 Selenicereus undatus HOM05D003129 ORTHO05D004326 9.7e-14 80.1 81 53.1
Atru.chr12.905 Acer truncatum HOM05D003129 ORTHO05D016405 2.2e-13 79.0 73 50.7
MBI06_g25719_MAGBIO Magnolia biondii HOM05D003129 ORTHO05D004326 4.8e-13 77.8 48 72.9
RcHm_v2.0_Chr7g0217661 Rosa chinensis HOM05D003129 ORTHO05D004326 6.3e-13 77.4 48 70.8
GSVIVG01015737001 Vitis vinifera HOM05D003129 ORTHO05D016405 1.4e-12 76.3 45 73.3
AUR62014921 Chenopodium quinoa HOM05D003129 ORTHO05D004326 8.5e-10 67.0 37 86.5
AUR62031128 Chenopodium quinoa HOM05D003129 ORTHO05D004326 5.5e-09 64.3 37 83.8
TPR.G40554 Trifolium pratense HOM05D003129 ORTHO05D004326 6.1e-08 60.8 48 52.1
DCAR_006587 Daucus carota HOM05D003129 ORTHO05D004326 6.7e-07 57.4 37 75.7
Nitab4.5_0001208g0080 Nicotiana tabacum HOM05D003129 ORTHO05D004326 9.7e-06 53.5 37 70.3


User provided reference genes

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