Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 6.1e-143 510.8 252 100.0
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 4.3e-104 381.7 253 73.5
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 6.9e-102 374.4 253 71.5
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 2.9e-100 369.0 254 70.9
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 6.4e-100 367.9 253 69.6
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.1e-99 367.1 252 69.4
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 1.9e-99 366.3 252 70.6
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.9e-99 366.3 252 69.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.4e-99 365.9 243 72.0
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 7.1e-99 364.4 254 70.1
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 1.6e-98 363.2 252 69.8
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 2.1e-98 362.8 252 69.8
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 4.6e-98 361.7 253 69.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 7.9e-98 360.9 223 77.1
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 7.9e-98 360.9 263 66.9
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 7.9e-98 360.9 228 72.4
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.0e-97 360.5 255 70.2
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.8e-97 359.8 253 69.2
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.8e-97 359.8 254 68.5
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.8e-97 359.8 220 76.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 3.0e-97 359.0 223 77.1
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 3.9e-97 358.6 241 70.5
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 6.7e-97 357.8 255 66.7
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 6.7e-97 357.8 223 74.9
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 8.7e-97 357.5 223 74.4
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 5.6e-96 354.8 253 68.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.6e-96 354.0 252 67.9
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 1.3e-95 353.6 210 78.1
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 2.1e-95 352.8 253 68.4
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.8e-95 352.4 245 69.0
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.8e-95 352.4 221 74.7
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.1e-94 350.5 253 67.2
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.4e-94 350.1 222 73.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.3e-94 348.2 248 69.4
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 9.0e-94 347.4 222 73.9
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.2e-93 347.1 260 65.0
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.5e-93 346.7 232 69.4
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.5e-93 346.7 255 67.8
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 2.0e-93 346.3 254 68.9
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 4.5e-93 345.1 256 66.8
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 7.6e-93 344.4 263 65.0
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 9.9e-93 344.0 258 65.9
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.2e-92 342.8 222 72.1
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 4.9e-92 341.7 253 65.6
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.1e-91 340.5 221 71.9
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 222 71.6
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.5e-91 339.3 257 65.0
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.2e-91 338.6 251 64.1
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 4.2e-91 338.6 216 73.6
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 4.2e-91 338.6 216 73.6
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 5.5e-91 338.2 212 73.6
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 5.5e-91 338.2 210 75.2
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 9.3e-91 337.4 254 65.4
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 9.3e-91 337.4 233 69.5
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 9.3e-91 337.4 222 72.1
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.6e-90 336.7 229 71.2
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.6e-90 335.1 209 75.6
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 6.0e-90 334.7 210 73.8
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 6.0e-90 334.7 210 73.8
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 6.0e-90 334.7 221 70.1
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 1.0e-89 334.0 202 75.7
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.3e-89 333.6 251 62.2
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 2.3e-89 332.8 210 73.8
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.3e-89 332.8 225 70.2
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.3e-89 332.8 210 73.8
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.3e-89 332.8 210 73.8
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 2.3e-89 332.8 246 65.4
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.0e-89 332.4 216 69.9
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 5.1e-89 331.6 247 64.4
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 5.1e-89 331.6 266 63.2
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 6.7e-89 331.3 203 74.9
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 1.9e-88 329.7 243 65.0
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.9e-88 329.7 223 70.0
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 2.5e-88 329.3 217 69.1
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 2.5e-88 329.3 256 61.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 4.3e-88 328.6 203 73.9
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 5.6e-88 328.2 243 64.6
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 5.6e-88 328.2 243 64.6
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 5.6e-88 328.2 223 68.2
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 5.6e-88 328.2 203 73.9
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 7.4e-88 327.8 230 67.4
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 9.6e-88 327.4 222 70.3
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 2.8e-87 325.9 208 71.6
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.8e-87 325.9 257 61.5
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 3.7e-87 325.5 203 72.9
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 8.2e-87 324.3 203 72.9
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 8.2e-87 324.3 203 73.4
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 8.2e-87 324.3 203 72.9
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 8.2e-87 324.3 202 74.3
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 1.8e-86 323.2 203 73.4
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 4.0e-86 322.0 203 72.9
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 4.0e-86 322.0 211 71.1
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 5.3e-86 321.6 204 73.0
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 5.3e-86 321.6 225 68.0
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 5.3e-86 321.6 203 72.9
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.5e-85 320.1 200 73.5
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.5e-85 318.5 203 72.4
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 4.5e-85 318.5 251 62.9
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 7.6e-85 317.8 350 49.1
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 1.0e-84 317.4 203 72.9
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 7.9e-82 307.8 211 67.8
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.0e-81 307.4 257 59.9
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.1e-80 303.9 243 64.6
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 1.1e-80 303.9 172 81.4
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.8e-76 288.9 222 63.5
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.8e-73 280.0 212 61.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 2.0e-69 266.5 158 80.4
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 6.5e-68 261.5 321 48.0
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 2.7e-66 256.1 173 67.1
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 3.3e-64 249.2 136 86.0
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.5e-61 239.2 245 53.9
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 2.9e-60 236.1 174 64.9
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.0e-57 227.6 193 53.4
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.0e-57 226.1 253 50.6
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.1e-56 224.2 195 52.8
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 4.4e-56 222.2 146 70.5
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.0e-52 211.1 187 52.9
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.7e-52 210.3 119 84.0
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 1.4e-46 190.7 190 45.3
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 2.4e-46 189.9 154 60.4
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 5.9e-45 185.3 106 81.1
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 3.8e-44 182.6 151 58.9
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.1e-43 181.0 100 87.0
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 2.5e-43 179.9 169 55.0
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 5.5e-43 178.7 194 47.4
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 9.4e-43 177.9 100 83.0
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-40 170.6 100 81.0
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.1e-38 164.5 97 80.4
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 1.8e-38 163.7 126 57.1
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 8.0e-34 148.3 87 81.6
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 6.8e-33 145.2 150 48.7
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 2.4e-30 136.7 84 67.9
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 3.6e-26 122.9 101 55.4
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.3e-25 120.2 183 40.4
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 1.2e-24 117.9 184 34.8
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 1.2e-24 117.9 103 52.4
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 4.4e-24 115.9 69 78.3
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 5.8e-24 115.5 89 64.0
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 5.8e-24 115.5 89 64.0
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.3e-23 114.4 72 75.0
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.3e-23 114.4 72 75.0
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.3e-23 114.4 102 59.8
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 4.9e-23 112.5 71 74.6
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 1.8e-17 94.0 176 31.2
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 6.8e-17 92.0 104 44.2
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 6.0e-13 79.0 49 73.5
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 7.8e-13 78.6 44 81.8
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 7.8e-13 78.6 44 81.8
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 5.6e-11 72.4 42 81.0
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 9.5e-11 71.6 117 38.5
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 2.1e-10 70.5 108 40.7
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 4.7e-10 69.3 56 62.5
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 8.1e-10 68.6 55 61.8
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 2.3e-09 67.0 47 68.1
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 3.1e-09 66.6 42 73.8
Oeu019523.1 Olea europaea HOM05D004920 ORTHO05D005998 3.1e-09 66.6 42 69.0
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 6.8e-09 65.5 40 75.0
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.6e-08 63.5 54 50.0
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 5.8e-08 62.4 94 36.2
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 2.9e-07 60.1 54 55.6


User provided reference genes

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