Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14310 Coffea canephora HOM05D007006 ORTHO05D008925 3.1e-75 285.0 142 100.0
Nitab4.5_0000376g0100 Nicotiana tabacum HOM05D007006 ORTHO05D008925 5.1e-62 241.1 138 84.1
MD10G1285600 Malus domestica HOM05D007006 ORTHO05D008925 6.7e-62 240.7 138 83.3
Nitab4.5_0011727g0040 Nicotiana tabacum HOM05D007006 ORTHO05D008925 8.7e-62 240.4 140 81.4
Sopen02g022230 Solanum pennellii HOM05D007006 ORTHO05D008925 8.7e-62 240.4 138 84.1
PGSC0003DMG400010717 Solanum tuberosum HOM05D007006 ORTHO05D008925 8.7e-62 240.4 138 84.1
CiPaw.10G055000 Carya illinoinensis HOM05D007006 ORTHO05D008925 1.1e-61 240.0 138 82.6
COL.COLO4_31384 Corchorus olitorius HOM05D007006 ORTHO05D008976 1.1e-61 240.0 138 82.6
Solyc02g077310.4 Solanum lycopersicum HOM05D007006 ORTHO05D008925 1.1e-61 240.0 138 84.1
Eucgr.E03165 Eucalyptus grandis HOM05D007006 ORTHO05D008925 3.3e-61 238.4 138 82.6
Manes.16G034601 Manihot esculenta HOM05D007006 ORTHO05D008925 4.3e-61 238.0 138 82.6
Nn1g04307 Nelumbo nucifera HOM05D007006 ORTHO05D008925 4.3e-61 238.0 138 81.2
Oeu001091.1 Olea europaea HOM05D007006 ORTHO05D008925 4.3e-61 238.0 138 82.6
Actinidia07621 Actinidia chinensis HOM05D007006 ORTHO05D008925 5.7e-61 237.7 138 82.6
TAR626G0127 Trochodendron aralioides HOM05D007006 ORTHO05D008925 5.7e-61 237.7 138 81.9
Atru.chr10.1745 Acer truncatum HOM05D007006 ORTHO05D008925 7.4e-61 237.3 138 81.9
CSS0027125 Camellia sinensis var. sinensis HOM05D007006 ORTHO05D008925 7.4e-61 237.3 138 82.6
Haze_06320 Corylus avellana HOM05D007006 ORTHO05D008925 9.7e-61 236.9 138 81.9
Duzib160G0118 Durio zibethinus HOM05D007006 ORTHO05D008925 9.7e-61 236.9 138 81.9
Gohir.A10G029300 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.3e-60 236.5 138 81.2
Gohir.D10G029800 Gossypium hirsutum HOM05D007006 ORTHO05D008925 1.3e-60 236.5 138 81.2
Gorai.011G031700 Gossypium raimondii HOM05D007006 ORTHO05D008925 1.3e-60 236.5 138 81.2
CsaV3_1G012640 Cucumis sativus L. HOM05D007006 ORTHO05D008925 1.6e-60 236.1 138 81.2
MSTRG.7381 Avicennia marina HOM05D007006 ORTHO05D008925 2.8e-60 235.3 138 81.2
THA.LOC104798412 Tarenaya hassleriana HOM05D007006 ORTHO05D008925 3.7e-60 235.0 138 79.7
Migut.M01077 Erythranthe guttata HOM05D007006 ORTHO05D008925 6.3e-60 234.2 138 81.2
CAN.G79.66 Capsicum annuum HOM05D007006 ORTHO05D008925 8.2e-60 233.8 138 81.9
Sed0005765 Sechium edule HOM05D007006 ORTHO05D008925 8.2e-60 233.8 138 79.7
RcHm_v2.0_Chr5g0009821 Rosa chinensis HOM05D007006 ORTHO05D008925 1.1e-59 233.4 138 82.6
Potri.011G062200 Populus trichocarpa HOM05D007006 ORTHO05D008925 1.4e-59 233.0 138 79.7
GSVIVG01021151001 Vitis vinifera HOM05D007006 ORTHO05D008925 1.4e-59 233.0 138 79.7
Rhsim02G0152900 Rhododendron simsii HOM05D007006 ORTHO05D008925 1.8e-59 232.6 142 81.0
Os01g0242500 Oryza sativa ssp. japonica HOM05D007006 ORTHO05D008925 2.4e-59 232.3 138 79.7
SalBow8G1160 Salvia bowleyana HOM05D007006 ORTHO05D008925 2.4e-59 232.3 138 80.4
Dinv17375 Davidia involucrata HOM05D007006 ORTHO05D008925 3.1e-59 231.9 141 81.6
Thecc.06G177200 Theobroma cacao HOM05D007006 ORTHO05D008925 3.1e-59 231.9 142 79.6
Thhalv10026439m.g Eutrema salsugineum HOM05D007006 ORTHO05D008925 4.1e-59 231.5 138 79.0
Prupe.4G056000 Prunus persica HOM05D007006 ORTHO05D008925 6.9e-59 230.7 138 78.3
Zm00001eb122370 Zea mays HOM05D007006 ORTHO05D008925 6.9e-59 230.7 138 79.7
AL7G35820 Arabidopsis lyrata HOM05D007006 ORTHO05D008925 2.0e-58 229.2 138 76.8
Hma1.2p1_0155F.1_g068540 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 2.6e-58 228.8 138 81.2
Carub.0007s2277 Capsella rubella HOM05D007006 ORTHO05D008925 3.4e-58 228.4 138 77.5
FAN21G1832 Fragaria x ananassa HOM05D007006 ORTHO05D008925 3.4e-58 228.4 138 81.2
AT4G18460 Arabidopsis thaliana HOM05D007006 ORTHO05D008925 4.5e-58 228.0 138 76.8
FvH4_3g08260 Fragaria vesca HOM05D007006 ORTHO05D008925 4.5e-58 228.0 133 83.5
FAN11G3635 Fragaria x ananassa HOM05D007006 ORTHO05D008925 4.5e-58 228.0 133 83.5
FAN16G3644 Fragaria x ananassa HOM05D007006 ORTHO05D008925 4.5e-58 228.0 133 83.5
TWI63G0680 Tripterygium wilfordii HOM05D007006 ORTHO05D008925 4.5e-58 228.0 138 79.7
arahy.Tifrunner.gnm1.ann1.PE4VQR Arachis hypogaea HOM05D000109 ORTHO05D000965 5.9e-58 227.6 138 77.5
Sabra11G0042600 Salix brachista HOM05D007006 ORTHO05D008925 7.6e-58 227.3 151 74.2
Sabra11G0044100 Salix brachista HOM05D007006 ORTHO05D008925 7.6e-58 227.3 151 74.2
ATR0602G073 Amborella trichopoda HOM05D007006 ORTHO05D008925 1.7e-57 226.1 138 79.7
PSO210G2152 Papaver somniferum HOM05D007006 ORTHO05D008925 1.7e-57 226.1 138 78.3
BraA01t00989Z Brassica rapa HOM05D007006 ORTHO05D008925 2.2e-57 225.7 138 75.4
VMungo0540G0068 Vigna mungo HOM05D007006 ORTHO05D008925 2.2e-57 225.7 138 76.8
CARHR225300 Cardamine hirsuta HOM05D007006 ORTHO05D008925 3.8e-57 224.9 138 76.1
HanXRQChr01g0008471 Helianthus annuus HOM05D007006 ORTHO05D008925 3.8e-57 224.9 138 76.8
Sp7g15560 Schrenkiella parvula HOM05D007006 ORTHO05D008925 5.0e-57 224.6 138 76.8
SEGI_08558 Sequoiadendron giganteum HOM05D007006 ORTHO05D008925 5.0e-57 224.6 138 78.3
TPR.G31857 Trifolium pratense HOM05D007006 ORTHO05D008925 5.0e-57 224.6 138 76.8
Lj6g0023400 Lotus japonicus HOM05D007006 ORTHO05D008925 6.5e-57 224.2 138 76.8
Phvul.006G179400 Phaseolus vulgaris HOM05D007006 ORTHO05D008925 8.5e-57 223.8 138 76.1
Aa31LG6G1200 Aethionema arabicum HOM05D007006 ORTHO05D008925 1.1e-56 223.4 138 75.4
ECA248G3223 Erigeron canadensis HOM05D007006 ORTHO05D008925 1.9e-56 222.6 138 76.8
CANSAT35G1771 Cannabis sativa HOM05D007006 ORTHO05D008925 2.5e-56 222.2 138 76.8
Glyma.15G079600 Glycine max HOM05D007006 ORTHO05D008925 2.5e-56 222.2 138 76.8
Glyma.13G233500 Glycine max HOM05D007006 ORTHO05D008925 3.2e-56 221.9 138 76.8
Hund21193 Selenicereus undatus HOM05D007006 ORTHO05D008925 4.2e-56 221.5 141 77.3
BcaC09g51505 Brassica carinata HOM05D007006 ORTHO05D008925 5.5e-56 221.1 139 74.1
BolC1t01215H Brassica oleracea HOM05D007006 ORTHO05D008925 5.5e-56 221.1 139 74.1
MELO3C002631.2 Cucumis melo HOM05D007006 ORTHO05D008925 7.2e-56 220.7 132 81.1
HPP92_002943 Vanilla planifolia HOM05D007006 ORTHO05D008925 1.2e-55 219.9 138 76.1
SGA_v2.0_scaffold309G48148 Striga asiatica HOM05D007006 ORTHO05D008925 4.6e-55 218.0 140 77.1
ClCG03G007950 Citrullus lanatus HOM05D007006 ORTHO05D008925 6.1e-55 217.6 141 75.9
Eucgr.E02654 Eucalyptus grandis HOM05D007006 ORTHO05D008925 6.1e-55 217.6 124 83.9
CDE02G4743 Ceratophyllum demersum HOM05D007006 ORTHO05D008925 1.8e-54 216.1 138 73.9
Ca_11669_v3 Cicer arietinum L. HOM05D007006 ORTHO05D008925 2.3e-54 215.7 138 74.6
Sc05g0007280 Simmondsia chinensis HOM05D007006 ORTHO05D008925 3.9e-54 214.9 124 82.3
SGA_v2.0_scaffold309G48130 Striga asiatica HOM05D007006 ORTHO05D008925 3.9e-54 214.9 138 76.8
BcaNung05874 Brassica carinata HOM05D007006 ORTHO05D008925 5.1e-54 214.5 138 71.7
Ciclev10016962m.g Citrus clementina HOM05D007006 ORTHO05D008925 5.1e-54 214.5 124 83.1
Psat1g148320 Pisum sativum HOM05D007006 ORTHO05D008925 9.7e-53 210.3 138 73.9
Cpa.g.sc7.31 Carica papaya HOM05D007006 ORTHO05D008925 1.6e-52 209.5 129 76.7
Mapoly0096s0066 Marchantia polymorpha HOM05D007006 ORTHO05D008925 9.1e-51 203.8 138 71.7
Pp3c2_4790 Physcomitrium patens HOM05D007006 ORTHO05D008925 2.0e-50 202.6 124 75.0
Lj1A1197T80 Lonicera japonica HOM05D007006 ORTHO05D008925 4.5e-50 201.4 138 73.2
CBR_g12914 Chara braunii HOM05D007006 ORTHO05D008925 5.9e-50 201.1 138 69.6
Medtr2g036040 Medicago truncatula HOM05D007006 ORTHO05D008925 1.7e-49 199.5 142 69.0
SMO356G0615 Selaginella moellendorffii HOM05D007006 ORTHO05D008925 1.4e-48 196.4 138 67.4
A01p10430 Brassica napus HOM05D007006 ORTHO05D008925 7.9e-47 190.7 124 71.8
CBR_g28086 Chara braunii HOM05D007006 ORTHO05D008925 1.0e-46 190.3 138 65.2
C01p12410 Brassica napus HOM05D007006 ORTHO05D008925 2.6e-45 185.7 125 70.4
Lsat_1_v5_gn_1_120360 Lactuca sativa HOM05D007006 ORTHO05D008925 5.3e-43 177.9 116 71.6
Hma1.2p1_0155F.1_g068550 Hydrangea macrophylla HOM05D007006 ORTHO05D008925 1.3e-41 173.3 138 66.7
RcHm_v2.0_Chr5g0007981 Rosa chinensis HOM05D007006 ORTHO05D008925 4.2e-40 168.3 127 70.1
Peaxi162Scf00875g00318 Petunia axillaris HOM05D007006 ORTHO05D008925 3.6e-39 165.2 88 83.0
Cfa000555 Carpinus fangiana HOM05D007006 ORTHO05D008925 8.8e-38 160.6 157 58.0
EL10Ac8g20473 Beta vulgaris HOM05D007006 ORTHO05D008925 2.8e-36 155.6 138 58.7
AUR62031124 Chenopodium quinoa HOM05D007006 ORTHO05D008925 1.8e-35 152.9 138 60.9
DCAR_004029 Daucus carota HOM05D007006 ORTHO05D008925 7.7e-34 147.5 87 77.0
Cre12.g542000 Chlamydomonas reinhardtii HOM05D007006 ORTHO05D008925 2.2e-33 146.0 139 51.1
AUR62014917 Chenopodium quinoa HOM05D007006 ORTHO05D008925 5.0e-33 144.8 138 58.7
MCO06G160 Micromonas commoda HOM05D007006 ORTHO05D008925 1.4e-30 136.7 152 50.7
Lalb_Chr20g0121401 Lupinus albus HOM05D007006 ORTHO05D008925 8.8e-30 134.0 79 73.4
Haze_27122 Corylus avellana HOM05D007006 ORTHO05D008925 2.7e-26 122.5 132 44.7
PGR042G2307 Punica granatum HOM05D007006 ORTHO05D008925 4.5e-26 121.7 72 77.8
PRCOL_00003508 Prasinoderma coloniale HOM05D007006 ORTHO05D008925 2.9e-25 119.0 139 46.8
MBI06_g25712_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 3.8e-25 118.6 71 76.1
PSO832G1055 Papaver somniferum HOM05D007006 ORTHO05D008925 4.2e-24 115.2 71 73.2
CBR_g41520 Chara braunii HOM05D000019 ORTHO05D000002 5.4e-19 98.2 64 67.2
SGA_v2.0_scaffold309G48132 Striga asiatica HOM05D007006 ORTHO05D008925 3.8e-17 92.0 57 75.4
Actinidia39491 Actinidia chinensis HOM05D007006 ORTHO05D008925 3.3e-16 89.0 79 62.0
MBI06_g25714_MAGBIO Magnolia biondii HOM05D007006 ORTHO05D008925 1.5e-08 63.5 42 73.8


User provided reference genes

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