Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g14100 Coffea canephora HOM05D009288 ORTHO05D011444 3.1e-229 798.1 399 100.0
Oeu012164.1 Olea europaea HOM05D009288 ORTHO05D011444 2.6e-103 379.8 411 54.5
Peaxi162Scf00697g00054 Petunia axillaris HOM05D009288 ORTHO05D011444 7.1e-101 371.7 457 49.7
Oeu001096.1 Olea europaea HOM05D009288 ORTHO05D011444 3.5e-100 369.4 404 54.0
MSTRG.15840 Avicennia marina HOM05D009288 ORTHO05D011444 8.6e-99 364.8 408 51.5
Nitab4.5_0005016g0020 Nicotiana tabacum HOM05D009288 ORTHO05D000173 9.5e-98 361.3 452 48.9
CAN.G79.87 Capsicum annuum HOM05D009288 ORTHO05D011444 6.2e-97 358.6 441 48.8
Migut.M01095 Erythranthe guttata HOM05D009288 ORTHO05D011444 6.2e-97 358.6 401 50.4
Nitab4.5_0002114g0180 Nicotiana tabacum HOM05D009288 ORTHO05D011444 5.2e-96 355.5 441 50.1
PGSC0003DMG400031772 Solanum tuberosum HOM05D009288 ORTHO05D011444 1.2e-95 354.4 446 50.2
Sopen10g004710 Solanum pennellii HOM05D009288 ORTHO05D011444 3.4e-95 352.8 447 49.4
PGSC0003DMG400022835 Solanum tuberosum HOM05D009288 ORTHO05D011444 5.8e-95 352.1 439 49.9
Nitab4.5_0005043g0050 Nicotiana tabacum HOM05D009288 ORTHO05D011444 7.6e-95 351.7 440 50.5
Peaxi162Scf00490g00074 Petunia axillaris HOM05D009288 ORTHO05D011444 3.7e-94 349.4 444 48.9
Solyc10g008920.1 Solanum lycopersicum HOM05D009288 ORTHO05D011444 6.4e-94 348.6 447 48.8
Sopen02g022400 Solanum pennellii HOM05D009288 ORTHO05D011444 1.9e-93 347.1 441 49.0
Migut.H01464 Erythranthe guttata HOM05D009288 ORTHO05D011444 3.2e-93 346.3 399 51.9
MSTRG.7368 Avicennia marina HOM05D009288 ORTHO05D011444 4.1e-93 345.9 415 50.1
SalBow8G2277 Salvia bowleyana HOM05D009288 ORTHO05D011444 1.8e-88 330.5 407 47.9
DCAR_028039 Daucus carota HOM05D009288 ORTHO05D011444 6.8e-88 328.6 406 48.3
SGA_v2.0_scaffold16G07649 Striga asiatica HOM05D009288 ORTHO05D011444 7.6e-87 325.1 402 47.8
SGA_v2.0_scaffold309G48159 Striga asiatica HOM05D009288 ORTHO05D011444 1.2e-84 317.8 225 67.6
CAN.G1876.1 Capsicum annuum HOM05D009288 ORTHO05D011444 6.0e-84 315.5 440 46.4
DCAR_004037 Daucus carota HOM05D009288 ORTHO05D011444 3.6e-81 306.2 399 46.6
Nitab4.5_0008221g0030 Nicotiana tabacum HOM05D000288 ORTHO05D011444 1.7e-78 297.4 436 44.5
vmacro03898 Vaccinium macrocarpon HOM05D000288 ORTHO05D011444 1.9e-77 293.9 232 60.3
SalBow7G2427 Salvia bowleyana HOM05D009288 ORTHO05D011444 7.1e-77 292.0 395 44.1
SalBow7G0267 Salvia bowleyana HOM05D009288 ORTHO05D011444 1.6e-76 290.8 225 63.6
Rhsim13G0181100 Rhododendron simsii HOM05D009288 ORTHO05D011444 4.6e-76 289.3 256 56.6
Actinidia16578 Actinidia chinensis HOM05D001211 ORTHO05D001084 1.6e-73 280.8 214 61.7
CSS0036897 Camellia sinensis var. sinensis HOM05D009288 ORTHO05D011444 2.4e-72 276.9 240 55.0
Solyc02g077490.3 Solanum lycopersicum HOM05D009288 ORTHO05D011444 1.7e-70 270.8 168 72.0
Dinv17366 Davidia involucrata HOM05D009288 ORTHO05D011444 8.4e-70 268.5 208 61.1
Hma1.2p1_0608F.1_g188330 Hydrangea macrophylla HOM05D009288 ORTHO05D011444 1.6e-65 254.2 203 59.1
Hma1.2p1_1465F.1_g285290 Hydrangea macrophylla HOM05D009288 ORTHO05D011444 9.1e-40 168.7 335 34.6
Actinidia05663 Actinidia chinensis HOM05D000288 ORTHO05D000173 2.5e-21 107.5 104 51.0
QL03p014248 Quercus lobata HOM05D008582 ORTHO05D010200 1.5e-13 81.6 186 29.0
Cfa006725 Carpinus fangiana HOM05D008582 ORTHO05D010200 8.8e-11 72.4 194 28.9
CiPaw.07G030600 Carya illinoinensis HOM05D008582 ORTHO05D010200 2.0e-10 71.2 193 30.1
CDE12G0818 Ceratophyllum demersum HOM05D000886 ORTHO05D000525 2.2e-09 67.8 157 28.7
Dinv04815 Davidia involucrata HOM05D000886 ORTHO05D000525 2.2e-09 67.8 154 32.5
Haze_04035 Corylus avellana HOM05D008582 ORTHO05D010200 1.8e-08 64.7 109 35.8
QL03p015301 Quercus lobata HOM05D008582 ORTHO05D010200 4.1e-08 63.5 172 30.2
CDE12G0614 Ceratophyllum demersum HOM05D000886 ORTHO05D000525 5.4e-08 63.2 110 33.6
Ciclev10003144m.g Citrus clementina HOM05D008582 ORTHO05D010200 7.0e-08 62.8 107 37.4
QL03p015391 Quercus lobata HOM05D008582 ORTHO05D010200 1.2e-07 62.0 112 32.1
QL03p015386 Quercus lobata HOM05D008582 ORTHO05D010200 1.6e-07 61.6 208 26.4
HPP92_008929 Vanilla planifolia HOM05D000886 ORTHO05D000525 1.6e-07 61.6 150 32.7
COL.COLO4_12936 Corchorus olitorius HOM05D008582 ORTHO05D010200 3.5e-07 60.5 112 37.5
Os01g0737600 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 3.5e-07 60.5 111 33.3
Lj3g0008510 Lotus japonicus HOM05D000886 ORTHO05D000525 1.0e-06 58.9 155 25.2
COL.COLO4_12929 Corchorus olitorius HOM05D008582 ORTHO05D010200 1.7e-06 58.2 148 26.4
Gohir.A11G245100 Gossypium hirsutum HOM05D000886 ORTHO05D000525 1.7e-06 58.2 114 35.1
Manes.11G141300 Manihot esculenta HOM05D000886 ORTHO05D000525 2.9e-06 57.4 142 29.6
Nn8g39916 Nelumbo nucifera HOM05D000886 ORTHO05D000525 2.9e-06 57.4 171 31.0
Nn4g25539 Nelumbo nucifera HOM05D000886 ORTHO05D000525 3.8e-06 57.0 152 30.9
Os04g0225100 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 3.8e-06 57.0 117 29.9
TAR374G1684 Trochodendron aralioides HOM05D000886 ORTHO05D000525 3.8e-06 57.0 158 25.9
Potri.019G021900 Populus trichocarpa HOM05D008427 ORTHO05D010551 5.0e-06 56.6 141 29.8


User provided reference genes

Program Settings