Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 2.4e-89 332.0 156 100.0
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.1e-69 265.8 152 76.3
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 6.9e-68 260.8 149 76.5
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 1.2e-67 260.0 151 76.2
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 4.4e-67 258.1 152 76.3
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 1.3e-66 256.5 151 74.8
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 3.8e-66 255.0 152 73.7
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 6.4e-66 254.2 150 74.0
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 1.9e-65 252.7 150 75.3
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 3.2e-65 251.9 152 73.0
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 3.2e-65 251.9 150 72.7
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 9.3e-65 250.4 147 72.8
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 1.2e-64 250.0 151 72.2
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 2.1e-64 249.2 150 74.0
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 1.0e-63 246.9 148 74.3
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 5.1e-63 244.6 149 71.1
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 8.7e-63 243.8 150 73.3
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 5.6e-62 241.1 149 69.8
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 7.3e-62 240.7 148 72.3
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 3.6e-61 238.4 151 71.5
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.1e-60 236.9 150 70.7
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.4e-60 236.5 143 74.1
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 6.9e-60 234.2 147 68.7
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 1.2e-59 233.4 150 68.0
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 2.6e-59 232.3 154 64.9
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 3.4e-59 231.9 152 68.4
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 4.5e-59 231.5 153 67.3
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 4.5e-59 231.5 149 70.5
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 2.2e-58 229.2 150 68.7
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.2e-58 229.2 147 69.4
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 4.9e-58 228.0 150 68.0
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 6.4e-58 227.6 150 68.0
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 8.4e-58 227.3 150 68.0
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 1.9e-57 226.1 150 67.3
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 1.2e-56 223.4 149 67.8
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.7e-56 222.2 149 66.4
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 2.7e-56 222.2 149 66.4
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 1.0e-55 220.3 147 66.0
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 1.8e-55 219.5 153 64.1
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 1.8e-55 219.5 147 66.0
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 1.3e-53 213.4 148 68.2
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 1.6e-53 213.0 151 64.9
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 1.6e-53 213.0 150 63.3
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.6e-53 213.0 148 61.5
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 1.6e-53 213.0 148 61.5
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 2.1e-53 212.6 147 61.9
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 2.8e-53 212.2 150 64.0
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 3.7e-53 211.8 148 64.9
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 4.8e-53 211.5 149 65.1
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 1.8e-52 209.5 151 64.2
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 3.1e-52 208.8 151 63.6
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 3.1e-52 208.8 151 63.6
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 5.3e-52 208.0 151 63.6
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 5.3e-52 208.0 151 63.6
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 5.3e-52 208.0 148 61.5
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 6.9e-52 207.6 150 63.3
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 2.2e-50 202.6 147 59.9
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 3.8e-50 201.8 150 62.7
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 3.8e-50 201.8 149 64.4
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 1.9e-49 199.5 151 61.6
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 4.2e-49 198.4 151 59.6
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 5.5e-49 198.0 151 58.9
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 9.3e-49 197.2 152 61.2
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 9.3e-49 197.2 118 72.9
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.2e-48 196.8 148 61.5
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 6.0e-48 194.5 147 59.2
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 1.0e-47 193.7 148 60.1
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 3.0e-47 192.2 150 60.7
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 6.7e-47 191.0 147 57.8
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.1e-46 190.3 151 58.3
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 7.4e-46 187.6 151 58.9
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 1.6e-45 186.4 127 66.9
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 2.1e-45 186.0 149 56.4
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 3.7e-45 185.3 151 57.6
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 6.9e-44 181.0 111 73.0
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 6.0e-40 167.9 123 62.6
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 7.4e-38 161.0 120 59.2
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 9.7e-38 160.6 155 51.6
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 6.7e-31 137.9 144 45.8
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 8.8e-31 137.5 100 65.0
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 3.2e-25 119.0 98 62.2
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 7.2e-25 117.9 155 42.6
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 2.6e-22 109.4 150 41.3
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 1.2e-16 90.5 63 60.3
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 3.0e-15 85.9 54 72.2
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 2.2e-13 79.7 56 62.5


User provided reference genes

Program Settings