Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g13540 Coffea canephora HOM05D007285 ORTHO05D009224 4.1e-54 214.5 114 100.0
Hma1.2p1_0208F.1_g088230 Hydrangea macrophylla HOM05D007285 ORTHO05D009224 4.6e-37 157.9 107 76.6
Actinidia07587 Actinidia chinensis HOM05D007285 ORTHO05D009224 3.0e-36 155.2 114 76.3
Rhsim02G0132100 Rhododendron simsii HOM05D007285 ORTHO05D009224 4.7e-34 147.9 102 74.5
Dinv40575 Davidia involucrata HOM05D007285 ORTHO05D009224 1.1e-33 146.7 107 72.0
Sopen02g022850 Solanum pennellii HOM05D007285 ORTHO05D009224 8.9e-33 143.7 102 73.5
Actinidia26129 Actinidia chinensis HOM05D007285 ORTHO05D009224 1.2e-32 143.3 114 71.9
Solyc02g078010.4 Solanum lycopersicum HOM05D007285 ORTHO05D009224 1.2e-32 143.3 102 73.5
Nitab4.5_0005745g0020 Nicotiana tabacum HOM05D007285 ORTHO05D009224 2.0e-32 142.5 102 71.6
HanXRQChr14g0435131 Helianthus annuus HOM05D007285 ORTHO05D009224 4.4e-32 141.4 105 72.4
Migut.M01131 Erythranthe guttata HOM05D007285 ORTHO05D009224 1.7e-31 139.4 114 67.5
CSS0032734 Camellia sinensis var. sinensis HOM05D007285 ORTHO05D009224 2.2e-31 139.0 114 67.5
Hund23773 Selenicereus undatus HOM05D007285 ORTHO05D009224 2.2e-31 139.0 102 73.5
Lsat_1_v5_gn_4_52261 Lactuca sativa HOM05D007285 ORTHO05D009224 4.9e-31 137.9 106 71.7
SGA_v2.0_scaffold100G29692 Striga asiatica HOM05D007285 ORTHO05D009224 4.9e-31 137.9 110 65.5
Ah.09g237440 Amaranthus hybridus HOM05D007285 ORTHO05D009224 8.4e-31 137.1 102 70.6
MSTRG.7339 Avicennia marina HOM05D007285 ORTHO05D009224 1.1e-30 136.7 114 64.9
Dinv17325 Davidia involucrata HOM05D007285 ORTHO05D009224 1.4e-30 136.3 114 67.5
COL.COLO4_31450 Corchorus olitorius HOM05D007285 ORTHO05D009224 2.4e-30 135.6 102 71.6
DCAR_008032 Daucus carota HOM05D007285 ORTHO05D009224 2.4e-30 135.6 106 66.0
Peaxi162Scf00623g00519 Petunia axillaris HOM05D007285 ORTHO05D009224 3.2e-30 135.2 101 69.3
SalBow8G5072 Salvia bowleyana HOM05D007285 ORTHO05D009224 3.2e-30 135.2 102 70.6
CAN.G529.14 Capsicum annuum HOM05D007285 ORTHO05D009224 4.1e-30 134.8 95 73.7
PSO541G0778 Papaver somniferum HOM05D007285 ORTHO05D009224 5.4e-30 134.4 102 66.7
Ca_18554_v3 Cicer arietinum L. HOM05D007285 ORTHO05D009224 7.1e-30 134.0 97 73.2
Thecc.06G185100 Theobroma cacao HOM05D007285 ORTHO05D009224 1.6e-29 132.9 101 72.3
PGR042G2867 Punica granatum HOM05D007285 ORTHO05D009224 3.5e-29 131.7 110 61.8
EL10Ac8g20395 Beta vulgaris HOM05D007285 ORTHO05D009224 6.0e-29 131.0 102 67.6
FvH4_3g08990 Fragaria vesca HOM05D007285 ORTHO05D009224 6.0e-29 131.0 93 73.1
FAN16G1611 Fragaria x ananassa HOM05D007285 ORTHO05D009224 6.0e-29 131.0 93 73.1
FAN21G1653 Fragaria x ananassa HOM05D007285 ORTHO05D009224 6.0e-29 131.0 93 73.1
FAN25G3510 Fragaria x ananassa HOM05D007285 ORTHO05D009224 6.0e-29 131.0 93 73.1
CiPaw.09G061300 Carya illinoinensis HOM05D007285 ORTHO05D009224 7.8e-29 130.6 112 63.4
AUR62017028 Chenopodium quinoa HOM05D007285 ORTHO05D009224 7.8e-29 130.6 102 67.6
Nn1g04136 Nelumbo nucifera HOM05D007285 ORTHO05D009224 7.8e-29 130.6 109 67.0
unitig_27.g24965 Utricularia gibba HOM05D007285 ORTHO05D009224 1.0e-28 130.2 107 66.4
MD00G1116000 Malus domestica HOM05D007285 ORTHO05D009224 1.3e-28 129.8 118 61.0
RcHm_v2.0_Chr5g0008721 Rosa chinensis HOM05D007285 ORTHO05D009224 1.7e-28 129.4 93 73.1
Atru.chr10.1858 Acer truncatum HOM05D007285 ORTHO05D009224 2.3e-28 129.0 101 67.3
Ciclev10017252m.g Citrus clementina HOM05D007285 ORTHO05D009224 2.3e-28 129.0 94 72.3
Lalb_Chr15g0089751 Lupinus albus HOM05D007285 ORTHO05D009224 3.9e-28 128.3 95 72.6
MD10G1292600 Malus domestica HOM05D007285 ORTHO05D009224 3.9e-28 128.3 110 64.5
Prupe.4G049200 Prunus persica HOM05D007285 ORTHO05D009224 3.9e-28 128.3 101 68.3
Gohir.D06G133300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 5.1e-28 127.9 103 67.0
Psat7g114520 Pisum sativum HOM05D007285 ORTHO05D009224 5.1e-28 127.9 102 70.6
Potri.004G045400 Populus trichocarpa HOM05D007285 ORTHO05D009224 6.6e-28 127.5 98 67.3
Phvul.002G229600 Phaseolus vulgaris HOM05D007285 ORTHO05D009224 1.1e-27 126.7 102 68.6
Gorai.010G155100 Gossypium raimondii HOM05D007285 ORTHO05D009224 1.5e-27 126.3 103 66.0
TWI38G2229 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 3.3e-27 125.2 101 63.4
CsaV3_1G012400 Cucumis sativus L. HOM05D007285 ORTHO05D009224 5.6e-27 124.4 94 70.2
Lj4g0016922 Lotus japonicus HOM05D007285 ORTHO05D009224 5.6e-27 124.4 97 70.1
ClCG03G008150 Citrullus lanatus HOM05D007285 ORTHO05D009224 7.3e-27 124.0 102 64.7
Manes.17G046800 Manihot esculenta HOM05D007285 ORTHO05D009224 7.3e-27 124.0 92 72.8
VMungo0251G0987 Vigna mungo HOM05D007285 ORTHO05D009224 7.3e-27 124.0 97 70.1
Medtr4g088680 Medicago truncatula HOM05D007285 ORTHO05D009224 9.6e-27 123.6 97 68.0
Sc05g0007570 Simmondsia chinensis HOM05D007285 ORTHO05D009224 9.6e-27 123.6 101 68.3
TPR.G16329 Trifolium pratense HOM05D007285 ORTHO05D009224 9.6e-27 123.6 101 66.3
Sed0001788 Sechium edule HOM05D007285 ORTHO05D009224 1.2e-26 123.2 102 66.7
Sed0014393 Sechium edule HOM05D007285 ORTHO05D009224 2.1e-26 122.5 103 65.0
arahy.Tifrunner.gnm1.ann1.J7N80D Arachis hypogaea HOM05D007285 ORTHO05D009224 2.8e-26 122.1 112 61.6
arahy.Tifrunner.gnm1.ann1.VSLT1W Arachis hypogaea HOM05D007285 ORTHO05D009224 2.8e-26 122.1 112 61.6
Gohir.A06G129300 Gossypium hirsutum HOM05D007285 ORTHO05D009224 3.6e-26 121.7 103 64.1
TWI63G1057 Tripterygium wilfordii HOM05D007285 ORTHO05D009224 3.6e-26 121.7 101 63.4
Eucgr.E03264 Eucalyptus grandis HOM05D007285 ORTHO05D009224 8.1e-26 120.6 102 65.7
Glyma.07G198400 Glycine max HOM05D007285 ORTHO05D009224 8.1e-26 120.6 94 71.3
Aa31LG6G10160 Aethionema arabicum HOM05D007285 ORTHO05D009224 1.1e-25 120.2 95 65.3
CANSAT35G0751 Cannabis sativa HOM05D007285 ORTHO05D009224 1.8e-25 119.4 113 58.4
THA.LOC104820545 Tarenaya hassleriana HOM05D007285 ORTHO05D009224 1.8e-25 119.4 114 58.8
TAR626G1757 Trochodendron aralioides HOM05D007285 ORTHO05D009224 1.8e-25 119.4 95 63.2
BolC3t19748H Brassica oleracea HOM05D007285 ORTHO05D009224 4.4e-24 114.8 98 60.2
Glyma.13G178000 Glycine max HOM05D007285 ORTHO05D009224 4.4e-24 114.8 90 70.0
CARHR027740 Cardamine hirsuta HOM05D007285 ORTHO05D009224 9.9e-24 113.6 95 60.0
AL1G41800 Arabidopsis lyrata HOM05D007285 ORTHO05D009224 2.2e-23 112.5 98 59.2
PGSC0003DMG401029703 Solanum tuberosum HOM05D007285 ORTHO05D009224 2.9e-23 112.1 97 63.9
AT1G28250 Arabidopsis thaliana HOM05D007285 ORTHO05D009224 8.4e-23 110.5 107 56.1
Carub.0001s2669 Capsella rubella HOM05D007285 ORTHO05D009224 8.4e-23 110.5 114 52.6
C05p27060 Brassica napus HOM05D007285 ORTHO05D009224 1.1e-22 110.2 107 57.0
BcaB07g32433 Brassica carinata HOM05D007285 ORTHO05D009224 1.4e-22 109.8 98 57.1
BcaC05g26830 Brassica carinata HOM05D007285 ORTHO05D009224 1.4e-22 109.8 107 56.1
A09p37820 Brassica napus HOM05D007285 ORTHO05D009224 1.9e-22 109.4 107 56.1
BraA09t39294Z Brassica rapa HOM05D007285 ORTHO05D009224 1.9e-22 109.4 107 56.1
Thhalv10009792m.g Eutrema salsugineum HOM05D007285 ORTHO05D009224 1.2e-21 106.7 108 53.7
ATR0763G085 Amborella trichopoda HOM05D007285 ORTHO05D009224 6.0e-21 104.4 111 52.3
ECA234G4273 Erigeron canadensis HOM05D007285 ORTHO05D009224 1.3e-20 103.2 83 68.7
HPP92_007016 Vanilla planifolia HOM05D007285 ORTHO05D009224 2.3e-20 102.4 88 62.5
vmacro15913 Vaccinium macrocarpon HOM05D007285 ORTHO05D009224 6.6e-20 100.9 77 68.8
BcaC01g00030 Brassica carinata HOM05D007285 ORTHO05D009224 8.7e-20 100.5 124 47.6
BolC5t31425H Brassica oleracea HOM05D007285 ORTHO05D009224 8.7e-20 100.5 125 48.8
Sabra04G0028300 Salix brachista HOM05D007285 ORTHO05D009224 8.7e-20 100.5 150 42.7
Haze_06424 Corylus avellana HOM05D007285 ORTHO05D009224 2.5e-19 99.0 82 65.9
CDE01G0551 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 4.3e-19 98.2 93 52.7
DCAR_004065 Daucus carota HOM05D007285 ORTHO05D009224 5.6e-19 97.8 83 63.9
QL05p041285 Quercus lobata HOM05D007285 ORTHO05D009224 9.6e-19 97.1 79 65.8
Zm00001eb305570 Zea mays HOM05D007285 ORTHO05D009224 4.0e-17 91.7 105 50.5
SEGI_38595 Sequoiadendron giganteum HOM05D007285 ORTHO05D009224 5.3e-17 91.3 101 50.5
SalBow8G3155 Salvia bowleyana HOM05D007285 ORTHO05D009224 2.6e-16 89.0 61 75.4
MELO3C002614.2 Cucumis melo HOM05D007285 ORTHO05D009224 4.9e-15 84.7 59 76.3
BcaB03g12118 Brassica carinata HOM05D007285 ORTHO05D009224 8.4e-15 84.0 79 53.2
Pp3c8_510 Physcomitrium patens HOM05D007285 ORTHO05D009224 3.9e-12 75.1 93 45.2
Mapoly0007s0165 Marchantia polymorpha HOM05D007285 ORTHO05D009224 5.1e-12 74.7 100 45.0
Os07g0299600 Oryza sativa ssp. japonica HOM05D007285 ORTHO05D009224 3.3e-11 72.0 90 47.8
CDE12G0235 Ceratophyllum demersum HOM05D007285 ORTHO05D009224 2.1e-10 69.3 92 46.7
C03p74970 Brassica napus HOM05D007285 ORTHO05D009224 2.8e-10 68.9 107 39.3
SMO229G0021 Selaginella moellendorffii HOM05D007397 ORTHO05D009336 4.9e-07 58.2 93 43.0


User provided reference genes

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