Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 5.9e-191 670.6 319 100.0
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.1e-172 609.0 319 87.8
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 5.2e-171 604.4 319 87.1
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.0e-170 602.4 319 87.5
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 5.7e-170 600.9 319 86.8
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 6.3e-169 597.4 317 86.8
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 1.4e-168 596.3 319 86.5
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.4e-168 596.3 319 86.8
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.8e-168 595.9 319 86.8
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 9.1e-168 593.6 319 86.5
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 1.2e-167 593.2 319 85.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 2.7e-167 592.0 319 85.6
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 3.5e-167 591.7 313 85.9
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 3.5e-167 591.7 319 85.6
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 7.7e-167 590.5 311 87.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.0e-166 590.1 310 87.1
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 2.2e-166 589.0 319 86.5
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.9e-166 588.6 319 85.6
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 6.5e-166 587.4 310 86.8
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 1.5e-165 586.3 311 87.5
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 2.5e-165 585.5 310 86.1
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.2e-165 585.1 308 88.0
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.2e-165 584.7 310 86.1
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 5.5e-165 584.3 309 85.8
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 5.5e-165 584.3 319 84.6
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 5.5e-165 584.3 313 85.3
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 7.2e-165 583.9 314 86.3
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 9.4e-165 583.6 319 85.0
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 1.2e-164 583.2 308 86.0
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 1.2e-164 583.2 319 85.3
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.6e-164 582.8 310 86.5
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.1e-164 582.4 310 86.5
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 3.6e-164 581.6 308 85.7
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 3.6e-164 581.6 310 86.8
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 3.6e-164 581.6 319 85.6
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 4.7e-164 581.3 313 85.0
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 4.7e-164 581.3 313 85.0
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 4.7e-164 581.3 319 85.0
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 6.1e-164 580.9 310 87.1
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 1.4e-163 579.7 314 83.1
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 1.4e-163 579.7 319 84.0
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 1.8e-163 579.3 319 83.7
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 1.8e-163 579.3 310 85.8
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 1.8e-163 579.3 319 83.7
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 2.3e-163 578.9 316 85.4
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 8.8e-163 577.0 319 83.7
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 4.4e-162 574.7 308 85.7
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 1.7e-161 572.8 310 85.2
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.7e-161 572.8 310 85.2
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 1.7e-161 572.8 308 85.1
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 1.7e-161 572.8 309 85.1
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.2e-161 572.4 307 85.7
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 2.8e-161 572.0 308 86.0
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 3.7e-161 571.6 319 82.4
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 3.7e-161 571.6 307 85.0
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 3.7e-161 571.6 307 85.0
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 3.7e-161 571.6 310 84.8
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 3.7e-161 571.6 321 83.2
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 3.7e-161 571.6 321 83.2
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 4.8e-161 571.2 310 85.2
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 6.3e-161 570.9 310 84.8
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 8.3e-161 570.5 310 83.9
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.8e-160 569.3 310 84.8
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.8e-160 569.3 310 83.9
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 2.4e-160 568.9 299 87.0
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 2.4e-160 568.9 310 84.5
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 4.1e-160 568.2 320 82.5
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 4.1e-160 568.2 320 82.5
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 4.1e-160 568.2 310 85.2
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.1e-160 568.2 310 83.9
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 4.1e-160 568.2 308 85.7
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.4e-160 567.8 310 83.5
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.0e-160 567.4 308 85.7
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 9.1e-160 567.0 320 82.2
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 1.2e-159 566.6 310 84.5
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.6e-159 566.2 308 85.4
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 3.5e-159 565.1 310 84.5
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 4.5e-159 564.7 308 84.4
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 5.9e-159 564.3 319 82.4
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.0e-158 563.5 310 83.9
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.3e-158 563.1 308 83.4
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 1.7e-158 562.8 320 81.6
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 1.7e-158 562.8 320 81.6
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 5.0e-158 561.2 310 83.2
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 8.6e-158 560.5 319 82.1
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 1.5e-157 559.7 307 83.7
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 1.9e-157 559.3 310 83.9
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 7.2e-157 557.4 321 81.6
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.2e-156 556.6 308 83.8
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 1.2e-156 556.6 320 81.6
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.1e-156 555.8 366 73.5
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 2.8e-156 555.4 310 83.2
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 4.7e-156 554.7 310 82.6
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 8.0e-156 553.9 318 81.4
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 8.0e-156 553.9 308 82.5
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 1.8e-155 552.7 306 82.7
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.3e-153 546.6 308 80.2
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 6.3e-153 544.3 313 80.8
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 1.8e-152 542.7 313 80.5
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 4.1e-152 541.6 309 81.2
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 4.1e-152 541.6 310 81.3
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 9.2e-152 540.4 310 81.3
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.0e-150 537.0 319 78.7
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.5e-149 530.4 316 80.1
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 3.6e-148 528.5 335 74.6
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.0e-147 525.0 319 75.5
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 5.2e-147 524.6 312 78.2
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 1.3e-145 520.0 289 82.7
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.7e-145 518.5 302 77.5
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 1.6e-143 513.1 309 76.4
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 4.6e-143 511.5 275 85.8
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 2.3e-142 509.2 272 85.7
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 4.4e-138 495.0 279 82.1
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 3.6e-132 475.3 308 69.8
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.8e-131 473.0 313 68.7
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 1.8e-131 473.0 313 68.7
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 7.6e-130 467.6 251 83.7
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 2.9e-129 465.7 333 67.9
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 3.2e-128 462.2 305 68.9
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.3e-126 456.8 308 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.6e-119 433.3 307 63.5
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.2e-116 421.4 222 87.4
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 1.6e-103 380.2 319 57.7
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 2.1e-103 379.8 242 72.7
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.1e-99 367.5 214 79.4
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 2.6e-90 336.3 330 51.2
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 6.1e-79 298.5 344 43.6
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 2.3e-70 270.0 370 39.2
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 3.4e-53 213.0 123 74.0
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.5e-32 144.4 82 82.9
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 6.8e-30 135.6 89 75.3
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.1e-22 110.2 84 67.9
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 3.7e-20 103.2 68 70.6
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 2.3e-14 84.0 52 75.0
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.3e-12 78.2 41 82.9
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.7e-12 77.8 45 71.1
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.9e-11 74.3 41 78.0
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 3.6e-07 60.1 42 59.5


User provided reference genes

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