Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 0.0e+00 1671.4 866 100.0
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 1.8e-279 966.1 913 60.6
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 6.5e-277 957.6 894 61.4
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-269 933.7 893 60.1
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 3.2e-268 928.7 890 61.3
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 7.7e-262 907.5 957 56.7
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.0e-258 897.1 956 56.9
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 2.3e-258 896.0 967 55.3
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 5.7e-257 891.3 822 61.8
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-256 890.2 870 59.3
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 1.7e-256 889.8 925 57.1
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.5e-252 875.9 911 56.6
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 5.2e-250 868.2 894 57.4
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 5.2e-250 868.2 989 53.7
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 2.9e-248 862.4 904 56.7
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 1.7e-245 853.2 881 57.0
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.5e-244 849.4 911 55.9
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 2.6e-241 839.3 903 56.0
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 7.5e-241 837.8 915 55.6
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 3.7e-240 835.5 897 56.3
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 8.3e-240 834.3 908 55.0
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 1.9e-239 833.2 908 55.1
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 1.3e-237 827.0 734 63.9
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.7e-237 826.6 818 57.9
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 8.6e-237 824.3 1082 49.4
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 1.5e-236 823.5 924 54.3
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 1.1e-234 817.4 818 58.4
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.8e-234 816.6 789 59.3
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.3e-234 816.2 807 57.4
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.3e-232 810.4 963 53.8
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 5.4e-231 805.1 944 53.1
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.1e-230 803.1 921 53.4
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 3.0e-229 799.3 898 55.8
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 3.3e-228 795.8 808 57.7
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 5.2e-226 788.5 797 57.5
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 8.9e-226 787.7 848 54.4
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 2.0e-225 786.6 922 51.8
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 4.6e-222 775.4 886 53.4
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 5.1e-221 771.9 967 51.0
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 5.1e-221 771.9 911 51.9
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 8.7e-221 771.2 913 51.7
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.1e-220 770.8 903 52.8
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 1.3e-219 767.3 886 53.3
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 2.8e-219 766.1 944 50.6
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 5.3e-218 761.9 916 52.0
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-217 760.4 905 51.4
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 2.6e-217 759.6 924 51.7
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 2.9e-216 756.1 881 52.8
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.4e-215 753.8 927 50.2
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 4.2e-215 752.3 831 55.4
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 9.3e-215 751.1 928 50.6
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 7.9e-214 748.0 928 49.7
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 1.3e-213 747.3 902 50.7
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 1.8e-213 746.9 955 51.0
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 3.0e-213 746.1 937 50.3
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 5.1e-213 745.3 930 50.0
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 1.1e-212 744.2 965 49.2
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.1e-212 744.2 966 48.9
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.5e-212 743.8 967 48.9
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 1.5e-212 743.8 902 51.4
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.3e-212 742.3 966 49.2
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.1e-211 740.0 976 48.5
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 2.8e-211 739.6 903 51.1
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 1.4e-210 737.3 914 49.7
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 1.4e-210 737.3 920 49.9
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 1.4e-210 737.3 875 52.3
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 2.4e-210 736.5 894 50.6
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 9.0e-210 734.6 966 48.9
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.8e-209 731.9 923 50.4
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 9.9e-209 731.1 903 50.6
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.1e-207 727.6 791 54.2
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 4.2e-207 725.7 921 50.2
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 4.2e-207 725.7 925 50.4
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 4.2e-207 725.7 913 51.2
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 5.5e-207 725.3 931 49.6
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 2.7e-206 723.0 976 48.4
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 7.9e-206 721.5 1031 47.1
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 2.5e-204 716.5 849 51.6
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 7.4e-204 714.9 849 51.5
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 1.0e-200 704.5 899 47.7
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 7.9e-198 694.9 880 50.6
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 8.7e-197 691.4 909 49.7
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 5.3e-194 682.2 1013 45.0
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 2.0e-193 680.2 1007 45.4
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.9e-192 676.4 895 49.4
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.9e-191 673.7 977 46.8
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 2.5e-191 673.3 882 50.1
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 7.2e-191 671.8 1007 44.6
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.8e-187 659.1 895 46.3
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.1e-186 656.4 880 47.8
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 9.1e-186 654.8 879 49.1
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.3e-184 651.0 849 48.4
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 8.5e-184 648.3 809 49.9
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 5.5e-183 645.6 896 44.9
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 4.6e-182 642.5 898 45.9
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 1.0e-181 641.3 877 47.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 1.0e-181 641.3 901 46.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 3.0e-181 639.8 896 45.4
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 5.1e-181 639.0 898 45.7
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 8.8e-181 638.3 883 46.8
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 8.8e-181 638.3 891 44.9
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 8.8e-181 638.3 891 44.9
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 8.8e-181 638.3 902 44.9
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 2.6e-180 636.7 890 46.3
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 5.7e-180 635.6 899 44.7
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 5.7e-180 635.6 819 46.8
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 8.2e-179 631.7 917 45.4
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 1.4e-178 630.9 927 45.0
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 1.8e-178 630.6 879 46.4
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 3.4e-177 626.3 959 43.0
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 5.9e-177 625.5 897 44.6
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 7.7e-177 625.2 884 44.5
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.5e-175 620.2 932 43.6
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 5.5e-175 619.0 786 50.4
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 3.0e-173 613.2 956 41.8
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 5.2e-173 612.5 914 42.8
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 2.0e-169 600.5 798 46.1
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 3.5e-169 599.7 891 44.1
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 5.0e-168 595.9 915 43.2
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 5.5e-167 592.4 779 47.5
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 3.5e-161 573.2 761 47.3
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 3.8e-160 569.7 916 43.9
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 3.2e-159 566.6 954 43.3
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 5.5e-159 565.8 924 43.0
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 2.1e-158 563.9 871 42.5
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 3.7e-155 553.1 803 43.1
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 1.2e-153 548.1 877 41.0
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 3.5e-145 520.0 805 45.1
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 4.5e-145 519.6 853 42.8
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-121 441.4 807 38.9
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 1.6e-121 441.4 807 38.9
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.1e-117 428.7 532 50.6
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 2.9e-115 420.6 942 35.8
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 4.4e-108 396.7 777 36.3
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 2.1e-102 377.9 650 39.7
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 4.9e-91 340.1 366 54.1
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.9e-90 338.2 336 57.7
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.8e-84 316.6 366 53.6
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 5.8e-84 316.6 958 29.4
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.5e-82 311.2 285 56.8
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 9.7e-79 299.3 390 50.5
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 4.1e-69 267.3 335 51.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 2.1e-65 255.0 452 39.8
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 4.4e-63 247.3 269 55.4
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 8.8e-48 196.4 259 45.6
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 1.5e-47 195.7 137 73.0
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 4.5e-44 184.1 214 52.3
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 3.0e-40 171.4 475 33.7
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.3e-35 155.2 210 41.9
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 3.3e-34 151.4 208 49.5
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 2.8e-33 148.3 195 48.7
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.3e-32 145.2 92 75.0
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.8e-30 138.3 177 49.2
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 3.6e-25 121.3 155 43.2
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 4.7e-25 120.9 112 54.5
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 3.4e-23 114.8 86 67.4
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 1.2e-20 106.3 89 57.3
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.3e-19 102.8 79 67.1
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 2.3e-19 102.1 102 54.9
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 5.0e-19 100.9 89 55.1
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 1.6e-17 95.9 57 82.5
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.1e-17 95.5 71 66.2
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 2.1e-17 95.5 85 55.3
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 4.0e-16 91.3 63 68.3
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 5.2e-16 90.9 83 59.0
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.2e-15 89.7 116 49.1
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 4.4e-15 87.8 107 43.9
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.4e-15 87.8 64 71.9
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 5.8e-15 87.4 117 41.9
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 2.7e-12 78.6 126 38.1
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 4.6e-12 77.8 117 42.7
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 1.3e-11 76.3 78 48.7
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.3e-11 76.3 51 74.5
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 2.3e-11 75.5 69 55.1
CSS0046083 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.3e-10 71.2 132 41.7
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 7.3e-10 70.5 60 53.3
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.6e-09 69.3 44 77.3
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 4.7e-09 67.8 92 41.3
MBI19_g07393_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 1.2e-07 63.2 53 60.4
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 7.5e-07 60.5 62 48.4
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 2.9e-06 58.5 38 68.4
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 2.9e-06 58.5 333 24.9


User provided reference genes

Program Settings