Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 2.6e-267 924.9 479 100.0
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.9e-226 788.5 485 84.5
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.9e-223 778.1 471 84.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 8.2e-221 770.4 476 83.8
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.4e-220 768.8 479 82.7
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 2.9e-218 761.9 476 83.2
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.1e-217 760.0 476 83.0
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 5.5e-217 757.7 483 82.6
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.4e-215 753.1 482 81.5
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 1.4e-215 753.1 477 82.6
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 1.4e-215 753.1 479 81.6
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 5.7e-214 747.7 476 81.9
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 9.7e-214 746.9 480 81.7
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 2.2e-213 745.7 480 82.1
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 1.1e-212 743.4 482 81.3
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.1e-212 741.5 479 81.2
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 1.3e-210 736.5 476 80.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.9e-210 735.3 484 81.4
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 2.9e-210 735.3 484 81.4
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 3.2e-209 731.9 481 80.0
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 4.2e-209 731.5 479 80.2
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.2e-208 729.9 479 80.0
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 1.6e-208 729.6 482 80.3
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.6e-208 729.6 482 79.7
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 7.9e-208 727.2 479 79.3
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 7.9e-208 727.2 479 80.4
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.9e-208 727.2 479 79.7
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 2.3e-207 725.7 480 79.4
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 3.0e-207 725.3 479 78.9
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 3.0e-207 725.3 480 79.4
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 8.8e-207 723.8 479 80.8
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 8.8e-207 723.8 479 79.3
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 8.8e-207 723.8 479 80.0
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.6e-206 722.2 479 79.3
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 2.6e-206 722.2 480 78.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 4.4e-206 721.5 480 80.0
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.4e-206 721.5 480 79.0
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.7e-205 719.5 481 80.0
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 2.8e-205 718.8 482 80.1
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.7e-205 718.4 480 78.5
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 3.7e-205 718.4 481 79.2
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 4.8e-205 718.0 480 79.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 4.8e-205 718.0 485 79.2
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 8.2e-205 717.2 480 79.0
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.4e-204 716.5 485 79.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.4e-204 716.5 485 79.2
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.4e-204 716.5 479 78.5
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 2.4e-204 715.7 491 77.0
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 3.1e-204 715.3 480 78.8
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 4.1e-204 714.9 471 81.1
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 5.3e-204 714.5 479 79.3
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.3e-204 714.5 476 79.8
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 5.3e-204 714.5 495 78.0
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 7.0e-204 714.1 479 78.9
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 7.0e-204 714.1 481 78.6
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 7.0e-204 714.1 479 77.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 9.1e-204 713.8 493 78.5
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.0e-203 712.6 491 77.6
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 5.9e-203 711.1 479 78.9
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.0e-202 710.3 493 77.5
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.8e-202 708.4 480 78.3
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 8.5e-202 707.2 478 77.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 4.2e-201 704.9 532 72.0
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 5.5e-201 704.5 479 77.9
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 5.5e-201 704.5 480 78.1
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 1.2e-200 703.4 479 77.9
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.6e-200 703.0 479 77.9
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.6e-200 701.8 479 77.7
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 8.0e-200 700.7 484 77.5
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.0e-199 700.3 476 76.7
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.0e-199 700.3 479 77.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 1.4e-199 699.9 479 77.7
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.9e-199 698.4 479 77.5
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 3.7e-197 691.8 485 77.1
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.1e-196 690.3 476 77.1
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.8e-196 689.5 483 77.8
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.4e-196 689.1 479 77.2
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 2.4e-196 689.1 481 76.5
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 3.1e-196 688.7 476 76.9
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 7.0e-196 687.6 479 76.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 3.8e-194 681.8 480 76.5
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 6.5e-194 681.0 479 74.9
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 2.5e-193 679.1 479 76.4
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 4.8e-189 664.8 477 75.1
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.4e-188 663.3 477 74.8
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 2.9e-186 655.6 493 73.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.5e-185 653.3 490 71.6
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 4.7e-184 648.3 479 73.5
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.1e-180 635.6 484 72.5
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.2e-179 633.6 482 71.8
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 1.6e-179 633.3 479 71.6
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.1e-177 627.1 511 67.5
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.1e-177 627.1 487 72.3
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.1e-177 627.1 480 74.6
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 5.5e-177 624.8 496 70.6
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 9.5e-177 624.0 482 71.2
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.4e-175 620.2 480 73.1
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 8.9e-175 617.5 487 71.3
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 1.3e-173 613.6 477 71.9
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 8.3e-173 610.9 482 69.7
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 5.4e-172 608.2 480 69.8
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 5.0e-170 601.7 479 69.1
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 5.0e-170 601.7 483 68.7
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 8.6e-170 600.9 507 67.1
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 8.0e-168 594.3 482 68.5
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.1e-167 592.4 480 68.3
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 7.5e-166 587.8 485 68.0
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 2.9e-165 585.9 484 68.0
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 4.9e-165 585.1 485 67.2
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 6.4e-165 584.7 486 68.1
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 1.4e-164 583.6 484 68.0
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.9e-164 583.2 486 67.3
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.9e-164 583.2 483 67.7
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 3.2e-164 582.4 475 68.6
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 7.0e-164 581.3 483 67.3
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 1.2e-163 580.5 486 67.1
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-163 580.1 486 67.3
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-163 580.1 486 67.3
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 1.9e-156 556.6 533 62.5
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.2e-152 543.9 482 65.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 1.9e-148 530.0 494 64.2
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 2.1e-147 526.6 460 65.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.7e-141 506.9 490 61.4
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.2e-139 500.7 289 88.6
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 4.2e-132 475.7 478 59.2
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 9.3e-132 474.6 484 59.1
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.3e-125 454.1 479 57.2
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 1.0e-117 427.9 479 55.7
Oeu043710.2 Olea europaea HOM05D002352 ORTHO05D003724 5.5e-116 422.2 304 73.4
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 5.7e-105 385.6 516 48.8
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 2.9e-101 373.2 232 83.2
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.3e-98 363.6 376 58.5
SHI23485 Sapria himalayana HOM05D002352 ORTHO05D003724 3.7e-96 356.3 427 50.4
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 5.3e-87 325.9 205 83.9
Nn1g03998 Nelumbo nucifera HOM05D002352 ORTHO05D003724 5.5e-84 315.8 279 64.2
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 2.7e-75 287.0 242 66.9
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.0e-73 280.8 480 44.2
Cpa.g.c36687 Carica papaya HOM05D002352 ORTHO05D003724 2.2e-69 267.3 189 73.5
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 2.3e-66 257.3 189 70.4
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 1.4e-63 248.1 195 69.2
MBI13_g10046_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.8e-59 233.8 177 72.3
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 5.2e-58 229.6 231 53.7
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 1.7e-53 214.5 199 61.3
Lsat_1_v5_gn_8_88460 Lactuca sativa HOM05D002352 ORTHO05D003724 5.0e-53 213.0 127 87.4
ECA248G2919 Erigeron canadensis HOM05D002352 ORTHO05D003724 2.5e-52 210.7 175 65.1
ATR1098G084 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.8e-51 207.2 177 64.4
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 2.0e-46 191.0 347 40.1
Eucgr.D00654 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.3e-45 188.3 209 52.2
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 1.8e-42 177.9 197 53.8
Actinidia05606 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.5e-41 174.9 130 70.8
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 2.4e-39 167.5 425 32.9
Lsat_1_v5_gn_5_24520 Lactuca sativa HOM05D002352 ORTHO05D003724 5.2e-34 149.8 82 90.2
ATR1081G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 3.8e-32 143.7 82 84.1
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 7.8e-30 136.0 216 42.6
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 3.3e-28 130.6 206 37.9
Pp3c7_1820 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.2e-27 128.6 261 39.8
Lsat_1_v5_gn_8_115100 Lactuca sativa HOM05D002352 ORTHO05D003724 1.1e-26 125.6 73 83.6
Hma1.2p1_0617F.1_g190130 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 7.6e-25 119.4 67 89.6
ATR0589G051 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-22 111.7 66 84.8
ATR0589G098 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.6e-21 106.3 61 86.9
EL10Ac4g08203 Beta vulgaris HOM05D002352 ORTHO05D003724 6.9e-18 96.3 68 72.1
ATR0757G041 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.1e-15 89.0 63 71.4
SHI23484 Sapria himalayana HOM05D002352 ORTHO05D013021 2.4e-15 87.8 55 78.2
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 9.0e-10 69.3 48 81.2
TPR.G36198 Trifolium pratense HOM05D002352 ORTHO05D003724 3.4e-09 67.4 45 77.8
Lsat_1_v5_gn_7_18120 Lactuca sativa HOM05D002352 ORTHO05D003724 7.1e-07 59.7 33 81.8


User provided reference genes

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