Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 3.1e-173 611.7 303 100.0
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 2.2e-126 456.1 298 73.2
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 3.7e-126 455.3 309 70.2
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 9.1e-125 450.7 299 73.6
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.4e-122 443.4 301 73.8
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.6e-121 439.9 299 71.2
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.6e-121 439.9 306 69.6
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 3.6e-121 438.7 306 69.9
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 3.6e-121 438.7 304 69.4
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 4.7e-121 438.3 301 70.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.0e-120 437.2 305 70.2
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 1.0e-120 437.2 306 69.6
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 2.3e-120 436.0 303 69.6
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.9e-120 435.3 304 69.4
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 8.8e-120 434.1 303 71.0
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.1e-119 433.7 299 68.6
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 9.7e-119 430.6 309 68.0
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.8e-118 429.1 299 70.2
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.8e-118 429.1 304 68.4
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 5.3e-117 424.9 307 68.4
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 9.1e-117 424.1 299 68.6
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.6e-116 423.3 296 70.3
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.6e-116 423.3 307 67.8
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 3.5e-116 422.2 308 67.9
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.0e-115 420.6 299 67.2
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.3e-115 420.2 299 68.6
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 1.7e-115 419.9 307 67.4
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.0e-115 418.3 302 67.9
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 6.5e-115 417.9 302 68.2
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.5e-114 416.8 310 65.8
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 4.2e-114 415.2 306 64.4
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 5.5e-114 414.8 300 67.0
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 5.5e-114 414.8 310 65.5
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 7.2e-114 414.5 299 67.2
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.6e-113 413.3 303 65.0
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.6e-113 413.3 306 64.7
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 2.1e-113 412.9 307 65.1
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.7e-113 412.5 307 65.8
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 2.7e-113 412.5 307 65.8
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 2.7e-113 412.5 309 65.0
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 4.7e-113 411.8 302 67.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 4.7e-113 411.8 307 65.5
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 4.7e-113 411.8 307 64.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 6.1e-113 411.4 307 65.1
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 8.0e-113 411.0 307 66.1
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.8e-112 409.8 302 66.9
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 2.3e-112 409.5 299 65.6
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.3e-112 409.5 292 68.8
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 3.0e-112 409.1 302 67.5
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 3.0e-112 409.1 308 64.3
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 3.0e-112 409.1 303 66.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 4.0e-112 408.7 304 66.1
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 5.2e-112 408.3 303 64.7
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 6.7e-112 407.9 302 67.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 6.7e-112 407.9 302 67.2
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.2e-111 407.1 299 68.9
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 2.0e-111 406.4 301 67.4
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 2.0e-111 406.4 308 64.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.7e-111 404.8 298 66.8
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.3e-110 403.7 308 64.3
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.3e-110 403.7 312 64.1
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.8e-110 402.5 309 65.4
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 3.7e-110 402.1 303 63.4
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 6.3e-110 401.4 309 63.8
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 8.2e-110 401.0 303 65.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.4e-109 400.2 305 63.9
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.4e-109 399.4 302 64.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 5.9e-108 394.8 301 64.1
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 5.0e-107 391.7 303 63.4
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 1.1e-106 390.6 294 65.0
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.9e-106 389.8 298 64.1
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.5e-106 389.4 289 67.5
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 7.2e-106 387.9 299 62.5
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 9.4e-106 387.5 298 62.8
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 4.7e-105 385.2 351 55.8
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 1.8e-104 383.3 304 63.2
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 5.2e-104 381.7 302 61.3
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.8e-104 381.3 295 66.1
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 8.8e-104 380.9 298 63.1
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-103 380.2 295 66.1
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.6e-103 379.4 295 65.4
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 4.4e-103 378.6 295 65.8
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.7e-102 376.7 295 65.1
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-102 376.3 295 65.1
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-102 376.3 294 65.6
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-102 376.3 294 65.6
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-102 376.3 295 65.4
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.2e-102 376.3 295 65.1
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.8e-102 375.9 295 61.7
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.8e-102 375.2 299 61.5
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 1.1e-101 374.0 298 60.7
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 5.9e-100 368.2 300 61.7
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-97 360.5 294 63.3
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 2.3e-96 356.3 299 59.5
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.0e-96 355.9 275 62.2
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.0e-96 355.9 298 59.4
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 4.0e-96 355.5 298 58.7
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.2e-96 355.1 298 59.4
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 3.4e-95 352.4 256 68.0
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 5.7e-95 351.7 307 58.0
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.8e-94 349.4 298 58.1
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 2.4e-93 346.3 277 61.0
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.0e-92 343.2 298 57.4
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.3e-91 339.7 229 69.4
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.3e-91 339.7 298 57.0
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 9.5e-90 334.3 298 56.7
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 1.2e-89 334.0 298 54.7
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.2e-89 334.0 298 57.0
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.4e-88 330.5 298 56.0
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.2e-88 328.6 251 61.4
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 5.2e-88 328.6 342 51.2
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 6.8e-88 328.2 298 55.0
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 8.9e-88 327.8 298 54.4
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 8.9e-88 327.8 298 54.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 2.0e-87 326.6 309 57.9
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.6e-87 326.2 304 55.3
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 2.6e-87 326.2 300 53.7
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 2.2e-86 323.2 299 54.2
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 2.2e-86 323.2 299 54.2
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 2.9e-86 322.8 300 54.0
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.2e-84 317.4 207 73.9
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.3e-83 313.2 312 54.5
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.4e-80 303.9 299 49.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 7.5e-79 298.1 313 49.2
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 7.5e-79 298.1 183 73.2
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 9.8e-79 297.7 310 49.7
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 6.4e-78 295.0 296 49.0
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 5.8e-71 271.9 196 63.8
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.2e-69 264.6 215 57.7
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.2e-68 264.2 313 46.6
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.0e-67 261.2 249 53.0
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 4.9e-62 242.3 150 72.0
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.0e-55 220.3 144 66.7
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 2.3e-51 206.8 173 53.8
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.3e-48 195.7 336 38.4
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 8.7e-43 178.3 158 63.3
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.8e-40 170.6 235 43.4
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 9.0e-40 168.3 261 37.5
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 5.8e-39 165.6 152 59.9
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 1.8e-24 117.5 263 33.1
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 3.1e-24 116.7 235 33.6
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.5e-22 109.0 78 55.1
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.9e-21 107.5 138 45.7
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 2.5e-21 107.1 162 37.7
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 5.5e-21 105.9 301 26.9
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.5e-15 87.8 51 66.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 2.0e-15 87.4 52 73.1
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.2e-14 84.0 71 53.5
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 1.6e-12 77.8 313 24.9
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.9e-11 73.2 76 53.9
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 8.8e-11 72.0 247 29.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 3.3e-10 70.1 287 27.2
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 3.3e-10 70.1 100 47.0
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 4.4e-10 69.7 197 27.9
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 7.4e-10 68.9 285 24.9
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.8e-09 67.0 66 51.5
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 4.8e-09 66.2 53 54.7
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 4.1e-08 63.2 162 31.5
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 7.0e-08 62.4 208 30.3
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 9.1e-08 62.0 48 54.2


User provided reference genes

Program Settings