Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 0.0e+00 1549.3 770 100.0
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1146.3 778 72.8
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1118.6 778 72.0
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1116.3 777 71.8
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1116.3 777 71.8
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1101.3 778 70.7
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 0.0e+00 1093.6 775 70.2
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1092.8 778 69.9
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 0.0e+00 1091.3 777 70.1
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 0.0e+00 1089.7 779 70.2
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 0.0e+00 1088.9 775 69.9
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 0.0e+00 1086.2 778 70.1
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1085.5 776 70.2
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 0.0e+00 1083.9 778 69.7
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 0.0e+00 1083.2 776 69.6
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1083.2 779 69.4
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1082.4 779 69.7
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1078.2 778 70.1
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1076.2 786 68.8
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 0.0e+00 1076.2 776 69.6
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 0.0e+00 1075.5 775 69.4
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1075.1 796 68.5
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 5.3e-312 1074.3 781 67.5
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 5.3e-312 1074.3 869 64.4
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 4.0e-310 1067.8 778 68.1
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 778 68.3
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 1.7e-308 1062.4 779 67.1
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.4e-307 1057.4 775 68.6
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 5.4e-307 1057.4 779 66.1
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.6e-306 1055.8 779 67.1
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.0e-306 1055.4 783 67.0
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 7.8e-306 1053.5 776 68.6
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 8.6e-305 1050.0 835 64.9
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 1.1e-304 1049.7 779 67.1
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 4.3e-304 1047.7 779 67.7
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 9.5e-304 1046.6 778 68.1
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.6e-303 1045.8 779 67.7
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 8.0e-303 1043.5 766 69.1
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 2.3e-302 1042.0 778 66.3
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 3.1e-302 1041.6 778 66.8
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.2e-302 1040.8 774 68.1
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 6.8e-302 1040.4 790 64.8
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 2.0e-301 1038.9 779 65.6
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 9.8e-301 1036.6 781 66.8
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 1.3e-300 1036.2 772 67.7
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 3.0e-297 1025.0 804 63.8
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 1.5e-296 1022.7 777 65.3
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 2.5e-296 1021.9 776 65.1
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 3.3e-296 1021.5 774 67.2
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 3.3e-296 1021.5 747 68.9
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 9.5e-296 1020.0 772 65.2
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 6.2e-295 1017.3 781 63.9
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 8.1e-295 1016.9 776 64.0
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 4.0e-294 1014.6 772 64.8
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.5e-293 1012.7 779 66.0
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 2.6e-293 1011.9 776 66.4
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 3.4e-293 1011.5 776 63.9
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 5.8e-293 1010.7 781 65.8
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 7.5e-293 1010.4 773 66.4
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 1.3e-292 1009.6 785 63.2
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 2.2e-292 1008.8 775 65.8
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 2.4e-291 1005.4 772 64.1
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 5.4e-291 1004.2 779 64.6
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 9.2e-291 1003.4 779 63.9
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 1.2e-290 1003.0 775 64.1
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.6e-290 1002.7 779 64.3
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 3.5e-290 1001.5 881 59.4
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 5.1e-289 997.7 777 64.2
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 8.6e-289 996.9 779 63.9
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 1.5e-288 996.1 776 65.6
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 2.4e-286 988.8 778 64.4
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 7.6e-285 983.8 778 63.6
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.9e-283 979.2 802 61.1
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 4.2e-283 978.0 778 63.4
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 7.1e-283 977.2 772 63.5
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 9.6e-280 966.8 774 64.9
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 1.8e-278 962.6 880 56.9
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.7e-273 946.0 772 62.8
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 2.5e-272 942.2 740 65.3
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 4.8e-271 937.9 780 61.0
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 4.9e-268 927.9 722 65.7
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.8e-265 919.5 784 61.1
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 9.3e-259 897.1 749 60.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.5e-253 879.8 783 57.6
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 3.7e-247 858.6 776 58.5
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 1.2e-237 827.0 793 54.5
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 5.5e-211 738.4 778 48.5
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.7e-207 726.9 498 71.1
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 3.3e-203 712.6 530 69.6
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 3.7e-199 699.1 537 64.4
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 4.3e-187 659.1 480 69.6
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.1e-182 644.4 780 46.5
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 4.0e-177 625.9 647 53.0
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.2e-174 616.3 426 71.4
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 7.3e-155 552.0 774 41.7
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 1.8e-153 547.4 796 40.2
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 7.9e-149 531.9 506 56.3
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.7e-140 502.3 398 65.8
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.1e-137 493.4 507 55.4
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 8.2e-114 415.6 738 35.2
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 1.5e-107 394.8 834 32.4
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 2.6e-107 394.0 436 51.4
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 2.5e-102 377.5 441 49.7
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.3e-98 365.2 378 50.3
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 2.0e-88 331.3 373 50.4
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.2e-84 316.6 256 64.8
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 1.1e-81 308.9 191 71.7
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 1.0e-76 292.4 266 56.0
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.7e-72 277.7 179 74.3
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 6.6e-71 273.1 218 61.5
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.9e-66 257.7 393 37.4
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 3.6e-61 240.7 761 27.6
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 9.6e-46 189.5 173 63.6
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 6.7e-39 166.8 227 42.3
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 2.5e-38 164.9 478 26.8
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 5.6e-38 163.7 323 35.0
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 7.6e-35 153.3 114 62.3
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 2.4e-33 148.3 156 51.3
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 1.8e-31 142.1 517 24.6
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 3.0e-31 141.4 255 34.9
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 8.1e-29 133.3 493 24.3
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.8e-28 132.1 86 70.9
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.3e-28 130.6 80 73.8
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 6.9e-28 130.2 71 81.7
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 2.6e-27 128.3 105 63.8
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 1.0e-26 126.3 84 75.0
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.0e-26 126.3 80 72.5
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 2.9e-26 124.8 109 52.3
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.1e-25 122.9 110 53.6
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.9e-25 122.1 90 64.4
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 5.5e-25 120.6 109 51.4
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.6e-24 119.0 80 68.8
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 3.0e-23 114.8 61 86.9
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.9e-23 114.4 83 65.1
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 6.7e-23 113.6 79 68.4
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 9.6e-22 109.8 61 77.0
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 3.7e-21 107.8 61 82.0
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.4e-20 105.1 152 46.1
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 9.3e-17 93.2 61 73.8
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 1.2e-16 92.8 82 61.0
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.0e-15 89.7 60 68.3
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.0e-15 88.2 80 58.8
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 3.0e-15 88.2 69 58.0
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 3.9e-15 87.8 71 60.6
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.3e-13 82.8 55 67.3
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.8e-13 80.9 55 65.5
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.8e-12 79.0 55 67.3
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.8e-12 79.0 55 67.3
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 4.1e-12 77.8 81 44.4
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.1e-12 76.6 60 60.0
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.0e-11 75.5 60 61.7
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 2.1e-08 65.5 47 68.1
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 3.0e-07 61.6 31 87.1
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 5.1e-07 60.8 80 42.5
Pp3c1_28980 Physcomitrium patens HOM05D000526 ORTHO05D000956 7.4e-06 57.0 70 37.1
Pp3c2_10200 Physcomitrium patens HOM05D000526 ORTHO05D000956 7.4e-06 57.0 69 37.7
Mapoly0007s0003 Marchantia polymorpha HOM05D000526 ORTHO05D000956 9.7e-06 56.6 69 36.2


User provided reference genes

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