Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.4e-259 899.0 444 100.0
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 2.7e-186 655.6 429 73.4
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 4.6e-186 654.8 429 73.4
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 5.3e-182 641.3 425 72.0
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 2.0e-181 639.4 442 70.1
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.8e-180 635.2 469 67.0
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.4e-179 633.3 478 66.3
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 3.6e-178 628.6 389 76.3
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 3.6e-178 628.6 415 71.3
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 6.1e-178 627.9 417 71.7
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 6.1e-178 627.9 417 71.7
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.0e-177 627.1 405 72.1
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 5.1e-177 624.8 386 75.6
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 8.8e-177 624.0 417 71.2
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 5.7e-176 621.3 413 72.4
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 9.7e-176 620.5 390 75.4
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 1.3e-175 620.2 442 69.0
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 1.7e-175 619.8 434 68.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 2.8e-175 619.0 422 69.9
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.1e-174 615.5 386 74.9
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 9.1e-174 614.0 413 70.2
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 7.7e-173 610.9 418 70.3
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 1.0e-172 610.5 393 72.0
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 1.0e-172 610.5 424 68.2
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.7e-172 609.8 400 71.5
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 2.2e-172 609.4 387 73.1
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 2.9e-172 609.0 431 68.7
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 3.8e-172 608.6 397 73.3
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 5.0e-172 608.2 398 70.9
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 1.1e-171 607.1 398 71.1
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 1.4e-171 606.7 408 69.6
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 1.9e-171 606.3 394 73.1
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 4.2e-171 605.1 445 66.1
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 4.2e-171 605.1 385 73.2
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 4.2e-171 605.1 425 68.5
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 9.4e-171 604.0 418 71.1
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.6e-170 603.2 396 69.7
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 1.6e-170 603.2 423 68.6
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 2.1e-170 602.8 385 73.5
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 3.6e-170 602.1 434 67.5
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 4.7e-170 601.7 441 66.0
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.0e-169 600.5 405 72.1
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 2.3e-169 599.4 389 71.5
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.3e-167 591.3 393 71.5
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.4e-166 590.1 421 67.7
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 1.8e-166 589.7 420 67.1
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 3.1e-166 589.0 398 69.6
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 3.1e-166 589.0 405 68.6
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 5.3e-166 588.2 377 73.5
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 3.5e-165 585.5 411 68.9
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.0e-164 583.9 372 73.4
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 1.7e-164 583.2 438 64.8
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 2.2e-164 582.8 400 69.5
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 2.2e-164 582.8 441 64.4
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 1.1e-163 580.5 403 69.2
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 1.9e-163 579.7 444 64.9
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 4.2e-163 578.6 443 65.7
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 2.1e-162 576.2 425 66.1
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.1e-162 574.7 374 72.5
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 3.0e-161 572.4 398 68.1
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 5.2e-161 571.6 403 68.5
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 8.8e-161 570.9 398 68.3
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 2.0e-160 569.7 360 73.3
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 5.7e-160 568.2 376 70.2
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 7.5e-160 567.8 398 67.8
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 9.7e-160 567.4 419 65.9
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 2.2e-159 566.2 399 67.2
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 1.4e-158 563.5 406 66.7
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 4.1e-158 562.0 382 68.1
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 7.0e-158 561.2 402 67.4
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 7.0e-158 561.2 399 67.2
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 7.0e-158 561.2 399 67.2
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.6e-157 560.1 417 65.5
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 3.5e-157 558.9 443 62.5
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 7.7e-157 557.8 403 66.5
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 8.5e-156 554.3 424 65.8
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.5e-155 553.5 400 68.0
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 3.2e-155 552.4 373 70.8
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 4.2e-155 552.0 412 65.5
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 2.7e-154 549.3 391 66.5
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 4.0e-153 545.4 352 71.6
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 2.0e-152 543.1 379 67.0
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 1.1e-150 537.3 442 61.1
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.6e-149 533.5 388 67.3
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.7e-149 532.7 443 61.9
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.8e-146 522.7 412 61.4
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.2e-141 507.3 387 65.6
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 4.5e-141 505.4 420 61.0
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.0e-137 492.3 339 71.1
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.7e-135 486.9 399 58.4
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 1.0e-132 477.6 364 65.1
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 3.3e-131 472.6 411 55.7
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 4.3e-131 472.2 410 54.4
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 4.0e-129 465.7 377 62.9
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.9e-127 459.5 321 69.2
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 9.2e-126 454.5 305 72.8
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.2e-125 454.1 408 57.1
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 8.9e-121 438.0 400 57.5
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.7e-117 426.4 361 55.7
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 1.1e-115 421.0 384 53.6
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 8.9e-113 411.4 370 54.9
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 1.2e-112 411.0 278 71.2
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.3e-91 339.7 245 65.7
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.4e-89 334.3 253 64.0
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 8.7e-84 315.1 278 54.0
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 4.5e-80 302.8 398 43.0
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 4.5e-80 302.8 178 80.9
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 8.4e-79 298.5 283 56.2
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.3e-78 295.0 171 80.1
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.3e-78 295.0 171 80.1
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 1.8e-76 290.8 401 42.9
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 3.1e-73 280.0 482 36.7
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.4e-65 254.6 146 81.5
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 6.1e-53 212.6 236 50.8
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 1.5e-51 208.0 127 78.0
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.4e-49 200.7 142 66.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.7e-45 186.4 103 79.6
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 4.4e-43 179.9 298 35.9
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 1.4e-41 174.9 123 65.0
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.5e-40 170.2 87 89.7
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.7e-40 169.1 121 66.9
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 2.1e-37 161.0 89 80.9
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 3.1e-33 147.1 100 66.0
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 1.8e-28 131.3 80 71.2
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.3e-28 131.0 100 60.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.2e-21 108.6 157 42.7
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 1.7e-18 98.2 200 36.5
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.4e-12 78.6 64 56.2
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 2.3e-12 77.8 162 34.0
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 9.2e-09 65.9 252 24.2
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 1.0e-07 62.4 218 26.6
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 2.3e-07 61.2 218 26.1
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 3.0e-07 60.8 252 22.6
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 3.9e-07 60.5 214 24.3
SEGI_22791 Sequoiadendron giganteum HOM05D003006 ORTHO05D003438 3.9e-07 60.5 290 22.4
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 1.5e-06 58.5 221 25.3


User provided reference genes

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