Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 2.7e-121 438.7 227 100.0
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 7.4e-47 191.4 232 51.7
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 2.6e-44 183.0 221 50.7
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.9e-42 176.8 230 50.0
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 1.9e-42 176.8 231 50.6
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 4.2e-42 175.6 253 47.4
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 1.6e-41 173.7 255 45.9
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 4.7e-41 172.2 238 50.0
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 2.0e-39 166.8 230 50.0
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 3.3e-39 166.0 245 48.2
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 5.7e-39 165.2 244 45.5
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 9.7e-39 164.5 236 46.6
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 2.2e-38 163.3 218 51.4
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 2.8e-38 162.9 236 48.3
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 8.2e-38 161.4 234 47.4
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 1.1e-37 161.0 253 45.5
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 3.1e-37 159.5 265 43.4
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 5.3e-37 158.7 242 45.9
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 7.0e-37 158.3 236 45.8
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 1.2e-36 157.5 231 46.8
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 1.6e-36 157.1 197 51.8
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 1.6e-36 157.1 243 43.2
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 1.0e-35 154.5 235 46.0
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 1.7e-35 153.7 239 46.0
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 3.8e-35 152.5 247 44.5
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 3.8e-35 152.5 254 44.5
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 5.0e-35 152.1 228 46.9
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 8.5e-35 151.4 258 43.8
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 1.1e-34 151.0 274 42.3
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 1.9e-34 150.2 213 48.8
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 2.5e-34 149.8 239 44.8
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 2.5e-34 149.8 238 43.7
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 4.2e-34 149.1 244 45.5
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 5.5e-34 148.7 244 42.2
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 7.2e-34 148.3 258 40.3
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 9.4e-34 147.9 226 45.1
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 9.4e-34 147.9 269 43.1
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 1.2e-33 147.5 273 42.5
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 1.6e-33 147.1 255 42.4
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 1.6e-33 147.1 255 42.4
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 3.6e-33 146.0 242 46.7
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 4.7e-33 145.6 272 41.5
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 8.0e-33 144.8 236 46.6
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 1.0e-32 144.4 229 46.3
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 2.3e-32 143.3 282 38.3
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 3.0e-32 142.9 258 41.5
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 3.0e-32 142.9 228 44.3
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 5.2e-32 142.1 253 41.9
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 8.8e-32 141.4 242 43.4
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.2e-31 141.0 228 44.3
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 3.4e-31 139.4 225 41.8
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 3.4e-31 139.4 243 43.2
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 5.7e-31 138.7 133 55.6
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 7.5e-31 138.3 226 43.4
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.7e-30 137.1 258 42.2
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 1.7e-30 137.1 245 42.4
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 2.2e-30 136.7 250 44.4
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 2.8e-30 136.3 225 47.1
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 3.7e-30 136.0 240 42.1
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 6.3e-30 135.2 238 43.7
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 1.4e-29 134.0 185 45.9
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.8e-29 133.7 225 44.0
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 2.4e-29 133.3 225 44.0
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 5.4e-29 132.1 245 42.0
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 7.0e-29 131.7 258 40.7
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 7.0e-29 131.7 256 40.2
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 7.0e-29 131.7 239 42.7
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 1.6e-28 130.6 251 41.4
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 2.7e-28 129.8 260 40.4
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 3.5e-28 129.4 259 39.8
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 3.5e-28 129.4 259 39.8
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 2.9e-27 126.3 231 43.3
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 4.2e-26 122.5 121 57.9
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 5.5e-26 122.1 244 43.4
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 7.2e-26 121.7 228 43.9
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 1.2e-25 120.9 236 38.1
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 2.7e-25 119.8 225 40.9
Oeu030052.1 Olea europaea HOM05D006486 ORTHO05D007888 4.7e-25 119.0 194 43.8
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 4.7e-25 119.0 236 38.1
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 4.7e-25 119.0 234 40.6
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 4.0e-24 115.9 231 39.0
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 2.6e-23 113.2 246 41.5
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 3.4e-23 112.8 246 40.2
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 7.5e-23 111.7 239 40.2
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 9.8e-23 111.3 228 39.5
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 9.8e-23 111.3 291 34.7
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 1.3e-22 110.9 141 49.6
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 2.2e-22 110.2 324 31.5
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 3.7e-22 109.4 241 37.3
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 6.3e-22 108.6 236 37.3
CDE05G2620 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.8e-21 107.1 251 39.0
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 7.0e-21 105.1 234 39.3
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 9.1e-21 104.8 225 43.1
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 9.1e-21 104.8 225 43.1
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.2e-20 104.4 224 42.0
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 2.0e-20 103.6 225 42.2
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 4.5e-20 102.4 192 40.6
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 1.0e-19 101.3 238 37.8
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.7e-19 100.5 116 51.7
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 5.0e-19 99.0 226 40.7
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 8.6e-19 98.2 128 44.5
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 1.9e-18 97.1 226 40.3
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 3.3e-18 96.3 237 36.7
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 4.3e-18 95.9 254 35.8
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 1.2e-17 94.4 234 36.8
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 1.6e-17 94.0 132 47.0
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 2.3e-16 90.1 229 38.4
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 4.0e-16 89.4 310 31.6
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 1.2e-15 87.8 123 43.1
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 1.2e-15 87.8 200 37.5
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 5.7e-15 85.5 79 57.0
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 1.7e-14 84.0 250 32.8
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 1.4e-13 80.9 245 36.3
Sc24g0000710 Simmondsia chinensis HOM05D006486 ORTHO05D007888 2.4e-13 80.1 124 41.9
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 2.7e-12 76.6 246 35.4
Nitab4.5_0001007g0050 Nicotiana tabacum HOM05D006486 ORTHO05D007888 4.3e-10 69.3 253 30.4
Oeu001396.1 Olea europaea HOM05D045950 ORTHO05D007888 2.8e-09 66.6 71 50.7
unitig_37.g12336 Utricularia gibba HOM05D006486 ORTHO05D007888 6.2e-09 65.5 228 33.8
Oeu001394.1 Olea europaea HOM05D045950 ORTHO05D007888 1.4e-08 64.3 71 50.7
HPP92_012357 Vanilla planifolia HOM05D006486 ORTHO05D007888 2.3e-08 63.5 210 32.9
ATR0693G170 Amborella trichopoda HOM05D006486 ORTHO05D007888 4.0e-08 62.8 137 36.5
Oeu021600.1 Olea europaea HOM05D006486 ORTHO05D007888 1.2e-07 61.2 90 50.0
Ah.14g088910 Amaranthus hybridus HOM05D000873 ORTHO05D001654 2.6e-07 60.1 106 36.8
Ah.09g236140 Amaranthus hybridus HOM05D006486 ORTHO05D007888 3.7e-06 56.2 220 26.4
AT4G05018 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 6.4e-06 55.5 172 32.0


User provided reference genes

Program Settings