Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g11630 Coffea canephora HOM05D003755 ORTHO05D004385 9.1e-190 666.8 344 100.0
MSTRG.14647 Avicennia marina HOM05D003755 ORTHO05D004385 1.6e-133 479.9 336 72.0
Oeu016525.1 Olea europaea HOM05D003755 ORTHO05D004385 3.0e-132 475.7 344 70.3
Sopen03g005650 Solanum pennellii HOM05D003755 ORTHO05D004385 2.5e-131 472.6 345 69.9
PGSC0003DMG400024071 Solanum tuberosum HOM05D003755 ORTHO05D004385 4.8e-130 468.4 345 68.7
Solyc03g031790.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.1e-129 467.2 345 69.0
unitig_26.g9395 Utricularia gibba HOM05D003755 ORTHO05D004385 1.5e-128 463.4 334 70.4
Migut.H01555 Erythranthe guttata HOM05D003755 ORTHO05D004385 5.8e-128 461.5 318 70.8
Nitab4.5_0000091g0500 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.7e-122 442.2 336 66.4
CSS0014334 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 2.4e-121 439.5 317 69.4
Hma1.2p1_0091F.1_g046190 Hydrangea macrophylla HOM05D003755 ORTHO05D004385 2.4e-121 439.5 348 64.9
CSS0017235 Camellia sinensis var. sinensis HOM05D003755 ORTHO05D004385 6.9e-121 438.0 315 70.2
Nitab4.5_0005793g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 9.0e-121 437.6 345 65.2
Dinv17826 Davidia involucrata HOM05D003755 ORTHO05D004385 2.2e-119 433.0 324 67.6
Thecc.06G215100 Theobroma cacao HOM05D003755 ORTHO05D004385 3.8e-119 432.2 345 62.3
AUR62012654 Chenopodium quinoa HOM05D003755 ORTHO05D004385 7.2e-118 427.9 333 65.5
EL10Ac8g19999 Beta vulgaris HOM05D003755 ORTHO05D004385 9.3e-118 427.6 330 67.0
CsaV3_6G049210 Cucumis sativus L. HOM05D003755 ORTHO05D004385 2.7e-117 426.0 342 65.5
MELO3C007374.2 Cucumis melo HOM05D003755 ORTHO05D004385 3.5e-117 425.6 342 65.5
ECA234G3589 Erigeron canadensis HOM05D003755 ORTHO05D004385 6.1e-117 424.9 337 64.4
Ah.09g235250 Amaranthus hybridus HOM05D003755 ORTHO05D004385 1.3e-116 423.7 337 64.4
Duzib192G0935 Durio zibethinus HOM05D003755 ORTHO05D004385 1.8e-116 423.3 345 62.3
PGR004G2273 Punica granatum HOM05D003755 ORTHO05D004385 1.8e-116 423.3 336 63.1
Cpa.g.sc198.13 Carica papaya HOM05D003755 ORTHO05D004385 3.0e-116 422.5 349 61.6
QL05p074736 Quercus lobata HOM05D003755 ORTHO05D004385 8.7e-116 421.0 336 64.3
Ciclev10015811m.g Citrus clementina HOM05D003755 ORTHO05D004385 1.5e-115 420.2 334 63.2
Duzib160G0429 Durio zibethinus HOM05D003755 ORTHO05D004385 1.5e-115 420.2 346 62.1
Sp2g02750 Schrenkiella parvula HOM05D003755 ORTHO05D004385 7.4e-115 417.9 338 61.8
Thhalv10023566m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 1.6e-114 416.8 349 60.7
FAN21G0915 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.2e-114 416.4 345 64.1
Gohir.A06G145950 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.2e-114 416.4 340 62.1
Potri.011G025700 Populus trichocarpa HOM05D003755 ORTHO05D004385 8.2e-114 414.5 318 66.4
Atru.chr10.2154 Acer truncatum HOM05D003755 ORTHO05D004385 1.1e-113 414.1 354 58.5
Carub.0002s0327 Capsella rubella HOM05D003755 ORTHO05D004385 1.1e-113 414.1 312 65.1
Cfa000266 Carpinus fangiana HOM05D003755 ORTHO05D004385 1.1e-113 414.1 339 64.3
Lsat_1_v5_gn_4_58721 Lactuca sativa HOM05D003755 ORTHO05D004385 1.1e-113 414.1 345 62.3
Nitab4.5_0002196g0020 Nicotiana tabacum HOM05D003755 ORTHO05D004385 1.1e-113 414.1 339 62.2
TWI38G1592 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.1e-113 414.1 338 63.3
ClCG01G022150 Citrullus lanatus HOM05D003755 ORTHO05D004385 3.1e-113 412.5 342 64.3
Peaxi162Scf00079g00073 Petunia axillaris HOM05D003755 ORTHO05D004385 3.1e-113 412.5 337 64.4
TWI38G1222 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 4.1e-113 412.1 340 63.2
FvH4_3g02600 Fragaria vesca HOM05D003755 ORTHO05D004385 5.3e-113 411.8 343 63.6
THA.LOC104823520 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 9.0e-113 411.0 336 61.3
Manes.16G011500 Manihot esculenta HOM05D003755 ORTHO05D004385 1.2e-112 410.6 351 61.5
TAR626G0320 Trochodendron aralioides HOM05D003755 ORTHO05D004385 1.2e-112 410.6 351 61.3
PGSC0003DMG400002072 Solanum tuberosum HOM05D003755 ORTHO05D004385 1.5e-112 410.2 335 61.8
CiPaw.09G088000 Carya illinoinensis HOM05D003755 ORTHO05D004385 2.6e-112 409.5 347 59.9
Gohir.D05G171400 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.6e-112 409.5 338 61.8
Prupe.4G025400 Prunus persica HOM05D003755 ORTHO05D004385 2.6e-112 409.5 341 62.8
BcaC06g31863 Brassica carinata HOM05D003755 ORTHO05D004385 4.5e-112 408.7 349 60.5
Phvul.007G053000 Phaseolus vulgaris HOM05D003755 ORTHO05D004385 4.5e-112 408.7 312 67.9
BcaC02g10535 Brassica carinata HOM05D003755 ORTHO05D004385 5.9e-112 408.3 312 65.1
C04p27760 Brassica napus HOM05D003755 ORTHO05D004385 5.9e-112 408.3 312 65.1
BolC4t24319H Brassica oleracea HOM05D003755 ORTHO05D004385 5.9e-112 408.3 312 65.1
Glyma.10G251600 Glycine max HOM05D003755 ORTHO05D004385 7.7e-112 407.9 334 64.7
CANSAT56G3751 Cannabis sativa HOM05D003755 ORTHO05D004385 1.0e-111 407.5 346 61.6
VMungo0720G2911 Vigna mungo HOM05D003755 ORTHO05D004385 1.0e-111 407.5 333 65.2
Glyma.20G141900 Glycine max HOM05D003755 ORTHO05D004385 1.7e-111 406.8 340 63.2
Sabra11G0016200 Salix brachista HOM05D003755 ORTHO05D004385 2.2e-111 406.4 354 60.7
Sabra11G0021900 Salix brachista HOM05D003755 ORTHO05D004385 2.2e-111 406.4 354 60.7
AT1G61790 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.9e-111 406.0 315 64.4
CARHR050550 Cardamine hirsuta HOM05D003755 ORTHO05D004385 2.9e-111 406.0 317 64.7
AL2G14320 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 5.0e-111 405.2 338 61.2
Sopen02g024900 Solanum pennellii HOM05D003755 ORTHO05D004385 5.0e-111 405.2 335 61.2
DCAR_028162 Daucus carota HOM05D003755 ORTHO05D004385 6.5e-111 404.8 346 63.0
Sc05g0008910 Simmondsia chinensis HOM05D003755 ORTHO05D004385 8.5e-111 404.4 335 61.8
Eucgr.E04113 Eucalyptus grandis HOM05D003755 ORTHO05D004385 1.4e-110 403.7 322 64.6
MBI18_g01410_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 1.4e-110 403.7 344 62.8
Peaxi162Scf00241g00121 Petunia axillaris HOM05D003755 ORTHO05D004385 1.4e-110 403.7 333 61.9
Atru.chr10.2153 Acer truncatum HOM05D003755 ORTHO05D004385 2.5e-110 402.9 346 59.2
Gohir.A05G168300 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.5e-110 402.9 338 61.2
A01p30670 Brassica napus HOM05D003755 ORTHO05D004385 3.2e-110 402.5 348 60.6
A01p30690 Brassica napus HOM05D003755 ORTHO05D004385 3.2e-110 402.5 348 60.6
BraA01t03198Z Brassica rapa HOM05D003755 ORTHO05D004385 3.2e-110 402.5 348 60.6
Aa31LG2G9060 Aethionema arabicum HOM05D003755 ORTHO05D004385 4.2e-110 402.1 339 59.3
C01p39060 Brassica napus HOM05D003755 ORTHO05D004385 9.4e-110 401.0 338 60.7
BolC1t03856H Brassica oleracea HOM05D003755 ORTHO05D004385 9.4e-110 401.0 338 60.7
THA.LOC104809515 Tarenaya hassleriana HOM05D003755 ORTHO05D004385 9.4e-110 401.0 344 60.2
Solyc02g080180.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 1.2e-109 400.6 335 60.3
FAN25G0829 Fragaria x ananassa HOM05D003755 ORTHO05D004385 2.7e-109 399.4 341 62.8
SGA_v2.0_scaffold89G27449 Striga asiatica HOM05D003755 ORTHO05D004385 6.1e-109 398.3 341 58.9
PSO675G2634 Papaver somniferum HOM05D003755 ORTHO05D004385 7.9e-109 397.9 338 62.4
PSO541G6483 Papaver somniferum HOM05D003755 ORTHO05D004385 1.0e-108 397.5 338 62.1
Aqoxy4G01977 Aquilegia oxysepala HOM05D003755 ORTHO05D004385 2.3e-108 396.4 336 61.9
MD00G1180300 Malus domestica HOM05D003755 ORTHO05D004385 2.3e-108 396.4 338 61.2
PGSC0003DMG400010547 Solanum tuberosum HOM05D003755 ORTHO05D004385 5.7e-107 391.7 304 65.8
Os03g0565100 Oryza sativa ssp. japonica HOM05D003755 ORTHO05D004385 7.4e-107 391.3 340 58.2
BcaB04g20374 Brassica carinata HOM05D003755 ORTHO05D004385 9.7e-107 391.0 350 59.1
Sopen10g003960 Solanum pennellii HOM05D003755 ORTHO05D004385 9.7e-107 391.0 335 62.1
Solyc10g008090.1 Solanum lycopersicum HOM05D003755 ORTHO05D004385 2.8e-106 389.4 322 63.7
Medtr1g105470 Medicago truncatula HOM05D003755 ORTHO05D004385 4.8e-106 388.7 337 60.2
Ca_10975_v3 Cicer arietinum L. HOM05D003755 ORTHO05D004385 4.1e-105 385.6 343 60.3
Sed0012988 Sechium edule HOM05D003755 ORTHO05D004385 5.3e-105 385.2 340 61.5
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 6.9e-105 384.8 268 69.0
CAN.G569.37 Capsicum annuum HOM05D003755 ORTHO05D004385 2.0e-104 383.3 339 58.4
COL.COLO4_31737 Corchorus olitorius HOM05D003755 ORTHO05D004385 4.5e-104 382.1 345 56.5
TAR624G0284 Trochodendron aralioides HOM05D003755 ORTHO05D004385 5.9e-104 381.7 341 59.8
Lj5g0019176 Lotus japonicus HOM05D003755 ORTHO05D004385 2.2e-103 379.8 339 59.3
SalBow8G5594 Salvia bowleyana HOM05D003755 ORTHO05D004385 1.1e-102 377.5 332 56.6
Manes.17G035900 Manihot esculenta HOM05D003755 ORTHO05D004385 1.4e-102 377.1 345 57.1
ATR0109G031 Amborella trichopoda HOM05D003755 ORTHO05D004385 3.2e-102 375.9 336 57.1
Psat6g210560 Pisum sativum HOM05D003755 ORTHO05D004385 7.2e-102 374.8 331 59.5
Zm00001eb043070 Zea mays HOM05D003755 ORTHO05D004385 9.4e-102 374.4 316 60.8
Gohir.D09G069500 Gossypium hirsutum HOM05D003755 ORTHO05D004385 2.7e-101 372.9 341 55.4
Gorai.006G083700 Gossypium raimondii HOM05D003755 ORTHO05D004385 2.7e-101 372.9 341 55.4
SGA_v2.0_scaffold114G32031 Striga asiatica HOM05D003755 ORTHO05D004385 1.8e-100 370.2 340 57.4
Nn1g07049 Nelumbo nucifera HOM05D003755 ORTHO05D004385 3.0e-100 369.4 341 57.5
Lalb_Chr21g0307811 Lupinus albus HOM05D003755 ORTHO05D004385 8.8e-100 367.9 348 56.9
MD10G1315200 Malus domestica HOM05D003755 ORTHO05D004385 3.3e-99 365.9 335 59.4
Dinv20022 Davidia involucrata HOM05D003755 ORTHO05D004385 3.1e-97 359.4 280 64.3
Nitab4.5_0002196g0010 Nicotiana tabacum HOM05D000234 ORTHO05D004385 2.9e-95 352.8 268 66.4
Thhalv10008090m.g Eutrema salsugineum HOM05D003755 ORTHO05D004385 5.0e-95 352.1 335 54.6
Gorai.010G177400 Gossypium raimondii HOM05D003755 ORTHO05D004385 5.0e-95 352.1 332 57.2
CDE05G0706 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 1.5e-94 350.5 316 57.0
SEGI_11297 Sequoiadendron giganteum HOM05D003755 ORTHO05D004385 3.6e-93 345.9 313 57.5
Sp1g10170 Schrenkiella parvula HOM05D003755 ORTHO05D004385 2.3e-92 343.2 336 55.1
TPR.G5472 Trifolium pratense HOM05D003755 ORTHO05D004385 1.3e-90 337.4 255 66.3
Lj2A272T65 Lonicera japonica HOM05D003755 ORTHO05D004385 6.3e-90 335.1 340 54.7
AT1G11560 Arabidopsis thaliana HOM05D003755 ORTHO05D004385 2.0e-88 330.1 335 51.9
AL1G22670 Arabidopsis lyrata HOM05D003755 ORTHO05D004385 2.7e-88 329.7 332 51.5
CARHR011840 Cardamine hirsuta HOM05D003755 ORTHO05D004385 1.1e-86 324.3 334 54.8
HanXRQChr01g0003661 Helianthus annuus HOM05D003755 ORTHO05D004385 4.2e-86 322.4 309 53.1
Lsat_1_v5_gn_1_121441 Lactuca sativa HOM05D003755 ORTHO05D004385 4.2e-86 322.4 349 48.7
Lalb_Chr06g0164871 Lupinus albus HOM05D003755 ORTHO05D004385 3.6e-85 319.3 341 51.9
Carub.0001s1117 Capsella rubella HOM05D003755 ORTHO05D004385 8.0e-85 318.2 335 51.9
Mapoly0061s0113 Marchantia polymorpha HOM05D003755 ORTHO05D004385 8.0e-85 318.2 345 49.0
TWI38G0036 Tripterygium wilfordii HOM05D003755 ORTHO05D004385 1.8e-84 317.0 331 54.1
CDE11G0393 Ceratophyllum demersum HOM05D003755 ORTHO05D004385 2.3e-84 316.6 340 51.2
Pp3c3_13650 Physcomitrium patens HOM05D003755 ORTHO05D004385 1.2e-83 314.3 318 51.9
Sabra04G0011400 Salix brachista HOM05D003755 ORTHO05D004385 9.8e-83 311.2 408 45.8
Pp3c10_1910 Physcomitrium patens HOM05D003755 ORTHO05D004385 6.3e-82 308.5 337 46.9
Gohir.D06G152000 Gossypium hirsutum HOM05D003755 ORTHO05D004385 3.1e-81 306.2 273 58.2
Lj1A1226T40 Lonicera japonica HOM05D003755 ORTHO05D004385 5.4e-81 305.4 281 58.4
AagrBONN_evm.TU.Sc2ySwM_362.2118 Anthoceros agrestis HOM05D003755 ORTHO05D004385 7.0e-81 305.1 341 48.7
SMO118G0372 Selaginella moellendorffii HOM05D003755 ORTHO05D004385 1.3e-79 300.8 340 47.9
BcaB03g13253 Brassica carinata HOM05D003755 ORTHO05D004385 3.8e-79 299.3 335 51.0
Pp3c26_7270 Physcomitrium patens HOM05D003755 ORTHO05D004385 8.5e-79 298.1 333 47.4
Nitab4.5_0010745g0030 Nicotiana tabacum HOM05D003755 ORTHO05D004385 4.2e-78 295.8 191 72.3
C08p14530 Brassica napus HOM05D003755 ORTHO05D004385 7.2e-78 295.0 331 48.9
CAN.G404.10 Capsicum annuum HOM05D003755 ORTHO05D004385 9.4e-78 294.7 189 74.6
BraA08t35260Z Brassica rapa HOM05D003755 ORTHO05D004385 3.0e-76 289.7 330 47.6
BcaC07g38668 Brassica carinata HOM05D003755 ORTHO05D004385 6.8e-76 288.5 332 47.6
BolC8t49101H Brassica oleracea HOM05D003755 ORTHO05D004385 6.8e-76 288.5 332 47.6
Haze_06749 Corylus avellana HOM05D003755 ORTHO05D004385 4.4e-75 285.8 256 60.2
Nn1g03617 Nelumbo nucifera HOM05D003755 ORTHO05D004385 4.4e-75 285.8 179 73.2
A08p33440 Brassica napus HOM05D003755 ORTHO05D004385 5.7e-75 285.4 337 47.2
CAN.G782.22 Capsicum annuum HOM05D003755 ORTHO05D004385 7.5e-75 285.0 242 59.5
AUR62021999 Chenopodium quinoa HOM05D003755 ORTHO05D004385 9.8e-75 284.6 189 72.0
Nitab4.5_0002347g0110 Nicotiana tabacum HOM05D003755 ORTHO05D004385 3.7e-74 282.7 189 71.4
AagrBONN_evm.TU.Sc2ySwM_362.2344 Anthoceros agrestis HOM05D003755 ORTHO05D004385 1.1e-73 281.2 337 45.4
Gohir.A09G069600 Gossypium hirsutum HOM05D003755 ORTHO05D004385 1.3e-71 274.2 330 46.1
MBI14_g15203_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 6.6e-71 271.9 240 57.1
MBI06_g27714_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 8.9e-68 261.5 190 65.8
Peaxi162Scf00427g00012 Petunia axillaris HOM05D003755 ORTHO05D004385 2.9e-66 256.5 190 65.8
Nitab4.5_0002645g0040 Nicotiana tabacum HOM05D003755 ORTHO05D004385 7.3e-62 241.9 184 63.0
MBI19_g26612_MAGBIO Magnolia biondii HOM05D003755 ORTHO05D004385 3.6e-61 239.6 182 65.4
CBR_g36660 Chara braunii HOM05D003755 ORTHO05D004385 1.5e-59 234.2 322 42.2
Sed0022949 Sechium edule HOM05D003755 ORTHO05D004385 9.8e-51 204.9 227 54.6
Actinidia26947 Actinidia chinensis HOM05D003755 ORTHO05D004385 4.9e-50 202.6 228 52.2
Lsat_1_v5_gn_3_29240 Lactuca sativa HOM05D003755 ORTHO05D004385 3.2e-49 199.9 333 38.7
CBR_g46234 Chara braunii HOM05D003755 ORTHO05D004385 9.2e-49 198.4 335 38.8
CAN.G782.11 Capsicum annuum HOM05D003755 ORTHO05D004385 1.7e-47 194.1 173 59.5
TPR.G16992 Trifolium pratense HOM05D003755 ORTHO05D004385 1.2e-35 154.8 161 56.5
Lsat_1_v5_gn_7_27941 Lactuca sativa HOM05D003755 ORTHO05D004385 3.8e-34 149.8 172 45.3
BcaC04g22351 Brassica carinata HOM05D003755 ORTHO05D004385 2.4e-33 147.1 104 72.1
Lsat_1_v5_gn_7_47961 Lactuca sativa HOM05D003755 ORTHO05D004385 5.1e-31 139.4 92 71.7
CAN.G782.12 Capsicum annuum HOM05D003755 ORTHO05D004385 1.5e-30 137.9 99 67.7
BraA01t03199Z Brassica rapa HOM05D003755 ORTHO05D004385 4.3e-30 136.3 167 49.7
Cre16.g675602 Chlamydomonas reinhardtii HOM05D003755 ORTHO05D004385 3.1e-28 130.2 315 32.4
Lsat_1_v5_gn_4_80500 Lactuca sativa HOM05D003755 ORTHO05D004385 2.2e-26 124.0 89 62.9
MD02G1269300 Malus domestica HOM05D003755 ORTHO05D004385 2.7e-24 117.1 77 72.7
QL08p007617 Quercus lobata HOM05D003755 ORTHO05D004385 2.4e-20 104.0 81 54.3
QL10p045362 Quercus lobata HOM05D003755 ORTHO05D004385 2.6e-19 100.5 80 55.0
C09p20250 Brassica napus HOM05D003755 ORTHO05D004385 1.3e-18 98.2 75 68.0
MD02G1269200 Malus domestica HOM05D003755 ORTHO05D004385 1.3e-18 98.2 85 52.9
BolC9t54930H Brassica oleracea HOM05D003755 ORTHO05D004385 8.7e-15 85.5 57 70.2
Lsat_1_v5_gn_7_47981 Lactuca sativa HOM05D003755 ORTHO05D004385 4.3e-14 83.2 63 65.1
EL10As1g23076 Beta vulgaris HOM05D003755 ORTHO05D004385 4.8e-13 79.7 49 75.5
BcaB07g31286 Brassica carinata HOM05D003755 ORTHO05D004385 3.1e-12 77.0 73 60.3
AagrBONN_evm.TU.Sc2ySwM_228.3672 Anthoceros agrestis HOM05D003755 ORTHO05D004385 6.7e-07 59.3 74 43.2


User provided reference genes

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