Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 1.2e-178 630.2 421 100.0
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 2.2e-116 423.3 394 65.0
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 3.8e-113 412.5 412 62.6
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 3.3e-109 399.4 274 80.3
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 5.7e-109 398.7 425 60.0
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.1e-107 394.4 275 79.6
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 2.4e-107 393.3 275 79.3
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 5.3e-107 392.1 273 80.2
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 1.2e-106 391.0 273 79.1
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 2.6e-106 389.8 273 79.9
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.8e-105 386.0 271 79.7
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 5.0e-105 385.6 412 58.7
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.2e-104 382.5 418 59.1
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 4.2e-104 382.5 410 61.5
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 1.6e-103 380.6 439 57.2
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.6e-103 380.6 273 77.3
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.6e-103 380.6 273 77.3
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.6e-103 380.6 273 77.7
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 2.1e-103 380.2 274 77.0
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 2.7e-103 379.8 276 76.8
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 3.6e-103 379.4 273 76.9
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 6.1e-103 378.6 273 76.9
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 8.0e-103 378.3 272 78.7
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.0e-102 377.9 408 59.8
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.3e-102 376.7 273 78.0
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 3.9e-102 375.9 423 66.4
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 3.3e-101 372.9 414 58.7
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 9.7e-101 371.3 419 57.3
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 2.2e-100 370.2 394 59.1
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 4.8e-100 369.0 275 74.9
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.4e-99 367.5 439 55.4
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 1.2e-98 364.4 275 73.5
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-98 364.4 275 73.5
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 1.6e-98 364.0 419 56.1
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 2.0e-98 363.6 272 74.6
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 2.6e-98 363.2 273 73.3
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 2.6e-98 363.2 273 73.3
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 2.6e-98 363.2 278 74.1
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 3.5e-98 362.8 414 57.2
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 3.5e-98 362.8 275 73.5
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 4.5e-98 362.5 275 73.1
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 7.7e-98 361.7 273 74.0
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 1.0e-97 361.3 271 74.5
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 2.9e-97 359.8 273 75.8
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 2.9e-97 359.8 272 75.4
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 5.0e-97 359.0 271 74.2
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 6.5e-97 358.6 271 74.2
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 1.1e-96 357.8 420 55.5
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.1e-96 357.8 265 80.4
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.5e-96 357.5 414 60.1
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 5.5e-96 355.5 440 56.1
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 5.5e-96 355.5 273 76.9
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 7.2e-96 355.1 271 73.4
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 2.1e-95 353.6 397 57.9
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.8e-94 350.5 273 75.1
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 3.0e-94 349.7 276 71.4
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 5.2e-94 349.0 273 71.8
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 8.8e-94 348.2 419 56.1
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 2.0e-93 347.1 273 70.7
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 2.0e-93 347.1 273 70.7
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 4.4e-93 345.9 273 72.5
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 5.7e-93 345.5 273 70.7
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 5.7e-93 345.5 398 59.5
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 7.5e-93 345.1 259 74.9
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.7e-92 342.8 241 78.8
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 3.1e-91 339.7 272 73.2
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 5.3e-91 339.0 273 70.7
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 4.5e-90 335.9 282 71.3
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 1.3e-89 334.3 405 54.8
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 1.3e-89 334.3 395 55.2
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 6.5e-89 332.0 275 67.3
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 8.5e-89 331.6 422 55.0
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 1.5e-88 330.9 398 56.0
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 7.2e-88 328.6 260 69.6
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 4.7e-87 325.9 273 67.8
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.8e-86 323.9 276 68.8
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 6.8e-86 322.0 269 66.5
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 2.0e-85 320.5 456 53.3
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 4.4e-85 319.3 320 59.1
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.1e-83 314.7 273 67.4
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.3e-81 307.8 276 65.6
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 3.8e-81 306.2 268 60.8
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 5.5e-80 302.4 337 60.5
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 2.8e-79 300.1 272 67.6
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 7.5e-77 292.0 426 53.5
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 7.0e-75 285.4 274 68.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 7.0e-75 285.4 263 59.3
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 3.5e-74 283.1 268 68.3
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.3e-73 280.4 410 46.1
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 5.0e-73 279.3 274 67.2
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 1.6e-71 274.2 276 65.9
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 4.0e-70 269.6 260 64.2
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 3.4e-69 266.5 276 64.9
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.1e-67 261.5 436 47.5
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 1.9e-67 260.8 276 64.5
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 3.2e-67 260.0 273 56.4
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 9.2e-67 258.5 271 64.6
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 1.0e-65 255.0 443 46.7
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 5.6e-64 249.2 426 46.7
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 1.2e-63 248.1 263 54.4
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 4.7e-63 246.1 395 43.8
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 7.5e-61 238.8 232 62.1
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 2.2e-60 237.3 448 40.4
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.1e-59 235.0 177 74.0
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 4.3e-56 223.0 255 52.2
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 1.8e-54 217.6 427 44.0
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 6.4e-52 209.1 276 55.4
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 5.1e-49 199.5 240 49.6
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 6.8e-46 189.1 277 44.8
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 9.2e-43 178.7 266 52.6
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 4.6e-42 176.4 273 46.9
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 2.5e-32 144.1 254 48.8
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 7.3e-32 142.5 171 62.0
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 1.0e-25 122.1 86 72.1
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 6.2e-23 112.8 88 70.5
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 9.0e-22 109.0 197 48.7
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 1.5e-21 108.2 161 56.5
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 1.3e-20 105.1 83 69.9
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.3e-20 105.1 83 69.9
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 4.9e-20 103.2 93 61.3
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 4.9e-20 103.2 93 61.3
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 3.0e-17 94.0 156 52.6
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 8.7e-17 92.4 317 30.6
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 3.8e-12 77.0 253 30.8
Cre12.g546300 Chlamydomonas reinhardtii HOM05D005934 ORTHO05D005165 1.9e-11 74.7 250 32.8
Atru.chr12.721 Acer truncatum HOM05D002519 ORTHO05D005165 3.2e-11 73.9 86 52.3
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 6.0e-10 69.7 50 74.0
HPP92_006751 Vanilla planifolia HOM05D005934 ORTHO05D005165 3.7e-07 60.5 77 51.9


User provided reference genes

Program Settings