Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g11260 Coffea canephora HOM05D006193 ORTHO05D007808 2.2e-79 298.9 151 100.0
Solyc03g007490.3 Solanum lycopersicum HOM05D006193 ORTHO05D007808 7.6e-48 194.1 130 76.9
CAN.G108.21 Capsicum annuum HOM05D006193 ORTHO05D007808 1.7e-47 193.0 127 77.2
Nitab4.5_0006507g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 2.2e-47 192.6 132 75.0
Sopen03g003450 Solanum pennellii HOM05D006193 ORTHO05D007808 2.2e-47 192.6 130 76.2
Nitab4.5_0000071g0090 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.4e-46 189.9 132 74.2
Peaxi162Scf00011g01839 Petunia axillaris HOM05D006193 ORTHO05D007808 1.4e-46 189.9 130 74.6
Peaxi162Scf00370g00117 Petunia axillaris HOM05D006193 ORTHO05D007808 1.9e-46 189.5 130 74.6
Manes.10G047101 Manihot esculenta HOM05D006193 ORTHO05D007808 5.5e-46 188.0 127 74.8
Actinidia38857 Actinidia chinensis HOM05D006193 ORTHO05D007808 9.3e-46 187.2 126 75.4
PGSC0003DMG400009070 Solanum tuberosum HOM05D006193 ORTHO05D007808 9.3e-46 187.2 108 84.3
Cfa001656 Carpinus fangiana HOM05D006193 ORTHO05D007808 1.6e-45 186.4 124 75.0
Thecc.10G076000 Theobroma cacao HOM05D006193 ORTHO05D007808 7.9e-45 184.1 128 72.7
Gohir.D06G175300 Gossypium hirsutum HOM05D006193 ORTHO05D007808 1.0e-44 183.7 128 71.9
Gorai.010G205700 Gossypium raimondii HOM05D006193 ORTHO05D007808 1.0e-44 183.7 128 71.9
Cfa001990 Carpinus fangiana HOM05D006193 ORTHO05D007808 1.3e-44 183.3 128 71.9
SalBow4G2149 Salvia bowleyana HOM05D006193 ORTHO05D007808 1.3e-44 183.3 135 69.6
Haze_16878 Corylus avellana HOM05D006193 ORTHO05D007808 2.3e-44 182.6 128 71.9
HanXRQChr01g0023971 Helianthus annuus HOM05D006193 ORTHO05D007808 2.3e-44 182.6 126 73.0
Duzib114G0385 Durio zibethinus HOM05D006193 ORTHO05D007808 5.1e-44 181.4 131 69.5
Gohir.A06G167900 Gossypium hirsutum HOM05D006193 ORTHO05D007808 6.7e-44 181.0 128 71.1
Atru.chr12.797 Acer truncatum HOM05D006193 ORTHO05D007808 8.7e-44 180.6 110 81.8
Lsat_1_v5_gn_1_77620 Lactuca sativa HOM05D006193 ORTHO05D007808 8.7e-44 180.6 139 66.2
Lj5g0007819 Lotus japonicus HOM05D006193 ORTHO05D007808 1.9e-43 179.5 105 82.9
CSS0007064 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 2.5e-43 179.1 134 70.1
ECA248G2014 Erigeron canadensis HOM05D006193 ORTHO05D007808 2.5e-43 179.1 129 69.8
PGR044G2737 Punica granatum HOM05D006193 ORTHO05D007808 1.3e-42 176.8 127 70.9
TWI63G1140 Tripterygium wilfordii HOM05D006193 ORTHO05D007808 1.6e-42 176.4 129 69.8
COL.COLO4_28414 Corchorus olitorius HOM05D006193 ORTHO05D007808 2.1e-42 176.0 109 78.9
TAR623G1160 Trochodendron aralioides HOM05D006193 ORTHO05D007808 2.1e-42 176.0 125 71.2
Glyma.20G180500 Glycine max HOM05D006193 ORTHO05D007808 2.8e-42 175.6 120 75.0
Ciclev10033053m.g Citrus clementina HOM05D006193 ORTHO05D007808 3.7e-42 175.3 122 73.0
QL08p055470 Quercus lobata HOM05D006193 ORTHO05D007808 3.7e-42 175.3 129 69.8
DCAR_016552 Daucus carota HOM05D006193 ORTHO05D007808 4.8e-42 174.9 107 77.6
MSTRG.27474 Avicennia marina HOM05D006193 ORTHO05D007808 6.3e-42 174.5 120 75.0
HanXRQChr08g0229761 Helianthus annuus HOM05D006193 ORTHO05D007808 6.3e-42 174.5 112 75.0
VMungo0720G0734 Vigna mungo HOM05D006193 ORTHO05D007808 8.2e-42 174.1 120 75.8
Glyma.10G210100 Glycine max HOM05D006193 ORTHO05D007808 1.1e-41 173.7 98 84.7
Lalb_Chr01g0009491 Lupinus albus HOM05D006193 ORTHO05D007808 1.8e-41 172.9 121 72.7
Phvul.007G095900 Phaseolus vulgaris HOM05D006193 ORTHO05D007808 3.1e-41 172.2 120 73.3
Carub.0007s2828 Capsella rubella HOM05D006193 ORTHO05D007808 4.1e-41 171.8 105 80.0
Oeu014384.2 Olea europaea HOM05D006193 ORTHO05D007808 4.1e-41 171.8 157 61.8
RcHm_v2.0_Chr1g0363061 Rosa chinensis HOM05D006193 ORTHO05D007808 4.1e-41 171.8 108 75.9
TPR.G1973 Trifolium pratense HOM05D006193 ORTHO05D007808 4.1e-41 171.8 120 70.8
CiPaw.02G173400 Carya illinoinensis HOM05D006193 ORTHO05D007808 9.0e-41 170.6 98 82.7
Migut.F01979 Erythranthe guttata HOM05D006193 ORTHO05D007808 9.0e-41 170.6 125 72.8
Migut.D01650 Erythranthe guttata HOM05D006193 ORTHO05D007808 1.2e-40 170.2 130 70.8
Prupe.2G212200 Prunus persica HOM05D006193 ORTHO05D007808 1.2e-40 170.2 121 70.2
Hund05693 Selenicereus undatus HOM05D006193 ORTHO05D007808 1.2e-40 170.2 101 80.2
SGA_v2.0_scaffold355G49780 Striga asiatica HOM05D006193 ORTHO05D007808 1.2e-40 170.2 129 68.2
Sed0026413 Sechium edule HOM05D006193 ORTHO05D007808 1.5e-40 169.9 120 69.2
THA.LOC104808680 Tarenaya hassleriana HOM05D006193 ORTHO05D007808 1.5e-40 169.9 127 68.5
Sp7g11980 Schrenkiella parvula HOM05D006193 ORTHO05D007808 2.0e-40 169.5 116 72.4
Sed0026653 Sechium edule HOM05D006193 ORTHO05D007808 2.0e-40 169.5 107 76.6
AT4G14145 Arabidopsis thaliana HOM05D006193 ORTHO05D007808 3.4e-40 168.7 114 73.7
Thhalv10026557m.g Eutrema salsugineum HOM05D006193 ORTHO05D007808 4.5e-40 168.3 124 68.5
FvH4_7g19210 Fragaria vesca HOM05D006193 ORTHO05D007808 4.5e-40 168.3 98 82.7
AL7G42250 Arabidopsis lyrata HOM05D006193 ORTHO05D007808 7.6e-40 167.5 106 77.4
arahy.Tifrunner.gnm1.ann1.4G5N71 Arachis hypogaea HOM05D006193 ORTHO05D007808 7.6e-40 167.5 111 75.7
Duzib128G0799 Durio zibethinus HOM05D006193 ORTHO05D007808 1.3e-39 166.8 142 62.0
FAN10G3587 Fragaria x ananassa HOM05D006509 ORTHO05D007808 1.3e-39 166.8 145 62.1
arahy.Tifrunner.gnm1.ann1.889ECD Arachis hypogaea HOM05D006193 ORTHO05D007808 1.7e-39 166.4 111 75.7
Eucgr.J01081 Eucalyptus grandis HOM05D006193 ORTHO05D007808 1.7e-39 166.4 124 67.7
BcaC07g37722 Brassica carinata HOM05D006193 ORTHO05D007808 2.9e-39 165.6 125 70.4
BolC8t48104H Brassica oleracea HOM05D006193 ORTHO05D007808 2.9e-39 165.6 125 70.4
BraA08t33036Z Brassica rapa HOM05D006193 ORTHO05D007808 2.9e-39 165.6 125 70.4
BraA08t34379Z Brassica rapa HOM05D006193 ORTHO05D007808 3.8e-39 165.2 119 68.1
FAN10G2131 Fragaria x ananassa HOM05D006509 ORTHO05D008144 3.8e-39 165.2 145 61.4
MBI07_g44648_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 3.8e-39 165.2 107 75.7
TAR369G0988 Trochodendron aralioides HOM05D006193 ORTHO05D007808 3.8e-39 165.2 127 64.6
CANSAT54G0886 Cannabis sativa HOM05D006193 ORTHO05D007808 8.5e-39 164.1 132 65.9
Nn2g10831 Nelumbo nucifera HOM05D006193 ORTHO05D007808 8.5e-39 164.1 129 68.2
A08p10360 Brassica napus HOM05D006193 ORTHO05D007808 1.1e-38 163.7 115 72.2
CARHR220160 Cardamine hirsuta HOM05D006193 ORTHO05D007808 1.4e-38 163.3 105 76.2
PSO210G4078 Papaver somniferum HOM05D006193 ORTHO05D007808 1.4e-38 163.3 98 79.6
MD01G1107500 Malus domestica HOM05D006193 ORTHO05D007808 1.9e-38 162.9 124 66.9
PSO832G3015 Papaver somniferum HOM05D006193 ORTHO05D007808 1.9e-38 162.9 98 78.6
GSVIVG01016260001 Vitis vinifera HOM05D006193 ORTHO05D007808 1.9e-38 162.9 108 69.4
Aa31LG9G3240 Aethionema arabicum HOM05D006193 ORTHO05D007808 3.2e-38 162.2 103 76.7
BcaB04g18121 Brassica carinata HOM05D006193 ORTHO05D007808 4.2e-38 161.8 125 68.0
FAN03G1544 Fragaria x ananassa HOM05D006193 ORTHO05D007808 7.2e-38 161.0 97 79.4
SGA_v2.0_scaffold250G44987 Striga asiatica HOM05D006193 ORTHO05D007808 1.2e-37 160.2 113 69.0
Oeu042739.1 Olea europaea HOM05D006193 ORTHO05D007808 1.6e-37 159.8 143 61.5
unitig_37.g12308 Utricularia gibba HOM05D006193 ORTHO05D007808 1.6e-37 159.8 96 79.2
SGA_v2.0_scaffold24G10658 Striga asiatica HOM05D006193 ORTHO05D007808 4.6e-37 158.3 126 65.9
Potri.010G223700 Populus trichocarpa HOM05D006193 ORTHO05D007808 6.1e-37 157.9 126 62.7
A08p24240 Brassica napus HOM05D006193 ORTHO05D007808 1.0e-36 157.1 122 66.4
ClCG05G021080 Citrullus lanatus HOM05D006193 ORTHO05D007808 1.3e-36 156.8 160 57.5
ATR0329G030 Amborella trichopoda HOM05D006193 ORTHO05D007808 3.0e-36 155.6 110 67.3
Aqoxy1G03645 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.0e-36 155.6 107 70.1
BcaC01g00219 Brassica carinata HOM05D006193 ORTHO05D007808 3.0e-36 155.6 128 64.1
HPP92_011207 Vanilla planifolia HOM05D006193 ORTHO05D007808 6.7e-36 154.5 106 68.9
CiPaw.16G031600 Carya illinoinensis HOM05D006193 ORTHO05D007808 8.7e-36 154.1 98 77.6
Rhsim03G0119300 Rhododendron simsii HOM05D006193 ORTHO05D007808 2.5e-35 152.5 202 48.0
Os03g0288400 Oryza sativa ssp. japonica HOM05D006193 ORTHO05D007808 3.3e-35 152.1 121 61.2
CDE03G0070 Ceratophyllum demersum HOM05D006193 ORTHO05D007808 5.7e-35 151.4 110 64.5
MELO3C012421.2 Cucumis melo HOM05D006193 ORTHO05D007808 3.7e-34 148.7 135 58.5
Zm00001eb062340 Zea mays HOM05D006193 ORTHO05D007808 6.3e-34 147.9 99 69.7
Sc20g0001780 Simmondsia chinensis HOM05D006193 ORTHO05D007808 2.4e-33 146.0 126 61.9
Ca_10561_v3 Cicer arietinum L. HOM05D006193 ORTHO05D007808 1.5e-32 143.3 82 85.4
Aqoxy1G03181 Aquilegia oxysepala HOM05D006193 ORTHO05D007808 3.8e-31 138.7 109 65.1
Sabra10G0173000 Salix brachista HOM05D006193 ORTHO05D007808 3.8e-31 138.7 165 47.3
Psat6g182760 Pisum sativum HOM05D006193 ORTHO05D007808 5.0e-31 138.3 99 70.7
arahy.Tifrunner.gnm1.ann1.N5AHK9 Arachis hypogaea HOM05D006193 ORTHO05D007808 2.5e-30 136.0 90 76.7
arahy.Tifrunner.gnm1.ann1.D81QGL Arachis hypogaea HOM05D006193 ORTHO05D007808 5.5e-30 134.8 90 75.6
EL10Ac7g18239 Beta vulgaris HOM05D006193 ORTHO05D007808 1.2e-29 133.7 123 58.5
AUR62001381 Chenopodium quinoa HOM05D006193 ORTHO05D007808 2.1e-29 132.9 75 81.3
Ah.08g217480 Amaranthus hybridus HOM05D006193 ORTHO05D007808 4.6e-29 131.7 75 82.7
Mapoly0038s0090 Marchantia polymorpha HOM05D006193 ORTHO05D007808 1.5e-27 126.7 102 57.8
FAN19G2294 Fragaria x ananassa HOM05D006193 ORTHO05D007808 3.7e-26 122.1 82 74.4
vmacro07063 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 1.8e-25 119.8 63 92.1
CsaV3_5G036210 Cucumis sativus L. HOM05D006193 ORTHO05D007808 2.2e-23 112.8 66 80.3
Medtr1g094840 Medicago truncatula HOM05D006193 ORTHO05D007808 2.2e-23 112.8 69 76.8
MBI07_g30981_MAGBIO Magnolia biondii HOM05D006193 ORTHO05D007808 2.9e-23 112.5 64 82.8
FAN06G3393 Fragaria x ananassa HOM05D006193 ORTHO05D007808 6.5e-23 111.3 63 82.5
AagrBONN_evm.TU.Sc2ySwM_228.264 Anthoceros agrestis HOM05D006193 ORTHO05D007808 1.5e-19 100.1 103 47.6
Lsat_1_v5_gn_2_8120 Lactuca sativa HOM05D006193 ORTHO05D007808 3.3e-19 99.0 94 56.4
BolC3t19959H Brassica oleracea HOM05D006193 ORTHO05D007808 1.8e-17 93.2 108 53.7
EL10Ac7g17093 Beta vulgaris HOM05D006193 ORTHO05D007808 4.1e-17 92.0 63 73.0
Nitab4.5_0005501g0010 Nicotiana tabacum HOM05D006193 ORTHO05D007808 1.2e-16 90.5 86 55.8
Pp3c5_20880 Physcomitrium patens HOM05D006193 ORTHO05D007808 1.7e-15 86.7 99 43.4
SMO232G0066 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 2.9e-15 85.9 98 36.7
Potri.008G038500 Populus trichocarpa HOM05D006193 ORTHO05D007808 6.5e-15 84.7 57 70.2
SMO241G0021 Selaginella moellendorffii HOM05D006193 ORTHO05D007808 4.0e-12 75.5 90 35.6
vmacro07064 Vaccinium macrocarpon HOM05D006193 ORTHO05D007808 9.7e-11 70.9 63 60.3
CSS0043670 Camellia sinensis var. sinensis HOM05D006193 ORTHO05D007808 4.2e-06 55.5 63 50.8


User provided reference genes

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