Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 6.2e-302 1040.0 534 100.0
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 1.5e-202 709.9 535 72.9
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.2e-201 706.8 537 72.8
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 2.1e-201 706.1 535 71.0
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.3e-200 702.6 535 72.1
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 6.8e-200 701.0 540 70.9
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 6.8e-200 701.0 540 70.9
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 8.9e-200 700.7 536 72.6
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 3.4e-199 698.7 540 70.9
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 1.3e-198 696.8 535 71.0
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.7e-198 696.4 536 71.1
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.8e-197 693.0 535 70.8
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.8e-197 693.0 534 71.0
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 2.4e-197 692.6 536 71.6
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 2.7e-196 689.1 539 72.2
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 3.5e-196 688.7 537 71.7
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.7e-195 686.4 532 71.8
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.3e-195 686.0 538 71.2
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 2.3e-195 686.0 535 72.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 3.0e-195 685.6 536 70.9
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 8.6e-195 684.1 535 71.2
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 3.3e-194 682.2 538 71.2
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 4.7e-193 678.3 535 71.4
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 8.0e-193 677.6 535 70.7
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 2.3e-192 676.0 539 69.8
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 5.2e-192 674.9 536 68.8
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 8.9e-192 674.1 533 70.4
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 8.9e-192 674.1 536 69.8
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 8.9e-192 674.1 535 69.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 1.5e-191 673.3 537 69.6
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 9.8e-191 670.6 540 68.5
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 2.2e-190 669.5 534 70.0
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 2.2e-190 669.5 534 70.0
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 8.3e-190 667.5 538 70.6
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 2.4e-189 666.0 538 68.2
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 4.1e-189 665.2 534 69.1
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.6e-188 663.3 536 70.0
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.0e-187 660.6 537 69.5
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 3.9e-187 658.7 535 69.5
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 6.6e-187 657.9 545 68.8
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 1.5e-186 656.8 533 68.5
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.5e-186 656.0 537 67.6
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 4.3e-186 655.2 534 69.5
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 5.6e-186 654.8 537 67.2
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 5.6e-186 654.8 536 67.4
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 5.6e-186 654.8 534 68.5
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 7.3e-186 654.4 537 67.2
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 1.1e-184 650.6 537 68.2
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 1.1e-184 650.6 542 66.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 8.9e-184 647.5 537 67.2
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 2.0e-183 646.4 539 67.0
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 5.8e-183 644.8 539 66.8
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 1.7e-182 643.3 536 67.7
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 6.4e-182 641.3 543 66.1
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 8.3e-182 641.0 537 67.0
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 1.4e-181 640.2 537 67.0
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 3.2e-181 639.0 531 68.4
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 5.4e-181 638.3 536 67.0
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 9.2e-181 637.5 542 66.1
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 9.2e-181 637.5 538 66.4
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 7.8e-180 634.4 536 66.8
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 1.0e-179 634.0 537 68.7
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 8.6e-179 630.9 537 66.1
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 1.1e-178 630.6 536 65.9
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.3e-178 629.0 487 70.4
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 3.3e-178 629.0 537 65.5
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 7.3e-178 627.9 534 67.2
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 9.5e-178 627.5 536 64.7
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 2.8e-177 625.9 538 65.4
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 1.4e-176 623.6 535 65.6
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 4.0e-176 622.1 537 66.9
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 5.2e-176 621.7 537 65.0
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 1.5e-175 620.2 529 66.0
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.0e-175 619.8 536 67.5
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 3.4e-175 619.0 527 66.0
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 5.8e-175 618.2 528 66.5
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 1.4e-173 613.6 535 63.6
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.9e-173 613.2 535 66.0
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 1.9e-173 613.2 540 64.4
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 7.1e-173 611.3 535 63.7
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 9.2e-173 610.9 527 64.7
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 2.7e-172 609.4 532 65.2
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.8e-172 607.8 533 64.2
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.0e-171 607.4 533 64.4
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 3.0e-171 605.9 533 64.0
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 3.9e-171 605.5 534 64.6
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.1e-171 605.1 532 64.5
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 2.4e-168 596.3 539 63.1
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 6.9e-168 594.7 533 64.0
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.5e-167 593.6 531 63.8
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 2.2e-166 589.7 529 63.9
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-164 583.6 530 61.9
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 2.1e-164 583.2 534 61.8
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.1e-164 583.2 545 60.7
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 2.7e-164 582.8 530 63.4
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 6.0e-164 581.6 545 60.7
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.3e-163 580.5 490 66.7
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.1e-162 577.4 530 63.2
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.9e-162 576.6 530 62.6
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 5.3e-160 568.5 532 62.0
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 3.4e-159 565.8 478 66.3
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 7.6e-159 564.7 528 62.5
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.7e-158 563.5 528 62.3
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.4e-152 543.9 542 57.6
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 3.8e-150 535.8 537 61.6
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 3.8e-142 509.2 541 55.8
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.2e-141 506.1 542 55.7
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 9.3e-141 504.6 542 55.7
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 4.2e-133 479.2 542 54.4
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 6.1e-132 475.3 539 52.9
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 2.0e-127 460.3 541 54.0
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 5.0e-126 455.7 558 51.8
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 6.3e-121 438.7 544 51.7
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.5e-119 433.0 307 72.0
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.0e-118 431.4 517 52.2
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.3e-110 404.4 541 48.2
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.2e-106 391.3 536 49.4
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 4.5e-95 352.8 591 41.6
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.0e-86 325.1 314 61.5
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 7.5e-66 255.8 285 52.6
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.7e-54 218.0 203 62.1
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 5.8e-50 203.0 360 39.4
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 3.5e-31 140.6 303 35.6
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.3e-25 122.1 500 27.2
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 2.3e-22 111.3 569 25.8
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 7.4e-21 106.3 104 58.7
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 4.8e-20 103.6 79 64.6
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 1.0e-17 95.9 101 53.5
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 3.6e-15 87.4 54 72.2
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.8e-14 85.1 217 32.3
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.5e-13 82.0 54 70.4
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 2.8e-12 77.8 61 65.6
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.1e-11 74.3 68 64.7
PRCOL_00002377 Prasinoderma coloniale HOM05D005917 ORTHO05D333437 2.7e-07 61.2 435 23.7


User provided reference genes

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