Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g11000 Coffea canephora HOM05D009695 ORTHO05D007271 1.9e-53 212.2 106 100.0
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 3.1e-11 72.0 105 44.8
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 1.5e-10 69.7 100 42.0
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 2.0e-10 69.3 100 40.0
Gohir.D05G294900 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.3e-09 66.6 100 40.0
DCAR_019088 Daucus carota HOM05D009695 ORTHO05D007271 1.7e-09 66.2 108 40.7
Gohir.A05G294400 Gossypium hirsutum HOM05D009695 ORTHO05D007271 1.7e-09 66.2 100 40.0
Gorai.009G311600 Gossypium raimondii HOM05D009695 ORTHO05D007271 1.7e-09 66.2 100 40.0
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 1.7e-09 66.2 105 44.8
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 3.8e-09 65.1 97 44.3
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 3.8e-09 65.1 106 40.6
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 8.4e-09 63.9 77 45.5
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.2e-08 62.0 101 39.6
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 4.1e-08 61.6 104 36.5
Glyma.20G182100 Glycine max HOM05D007861 ORTHO05D007271 4.1e-08 61.6 101 40.6
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 5.4e-08 61.2 105 38.1
Medtr1g094250 Medicago truncatula HOM05D007861 ORTHO05D007271 5.4e-08 61.2 101 40.6
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 5.4e-08 61.2 68 48.5
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 5.4e-08 61.2 92 43.5
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 7.1e-08 60.8 73 45.2
Atru.chr12.833 Acer truncatum HOM05D009695 ORTHO05D007271 9.2e-08 60.5 75 44.0
Cpa.g.sc53.122 Carica papaya HOM05D009695 ORTHO05D007271 9.2e-08 60.5 90 43.3
Eucgr.G02861 Eucalyptus grandis HOM05D007861 ORTHO05D007271 9.2e-08 60.5 98 41.8
PGSC0003DMG400007440 Solanum tuberosum HOM05D009695 ORTHO05D007271 9.2e-08 60.5 108 40.7
CiPaw.01G269700 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.2e-07 60.1 90 41.1
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.2e-07 60.1 92 40.2
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.2e-07 60.1 92 40.2
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.6e-07 59.7 104 34.6
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.6e-07 59.7 106 39.6
Prupe.2G209700 Prunus persica HOM05D019773 ORTHO05D007271 1.6e-07 59.7 110 42.7
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 1.6e-07 59.7 92 38.0
Lsat_1_v5_gn_8_20640 Lactuca sativa HOM05D007861 ORTHO05D007271 2.7e-07 58.9 67 47.8
Migut.F01962 Erythranthe guttata HOM05D007861 ORTHO05D007271 3.5e-07 58.5 69 44.9
FAN03G2059 Fragaria x ananassa HOM05D019773 ORTHO05D007271 3.5e-07 58.5 108 39.8
FAN10G2337 Fragaria x ananassa HOM05D019773 ORTHO05D007271 3.5e-07 58.5 108 39.8
AL5G35930 Arabidopsis lyrata HOM05D009695 ORTHO05D007271 4.6e-07 58.2 98 44.9
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 4.6e-07 58.2 102 41.2
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 4.6e-07 58.2 93 44.1
Glyma.10G208600 Glycine max HOM05D007861 ORTHO05D007271 7.8e-07 57.4 55 56.4
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 1.0e-06 57.0 60 53.3
arahy.Tifrunner.gnm1.ann1.JM7P1B Arachis hypogaea HOM05D051911 ORTHO05D007271 1.3e-06 56.6 48 64.6
Haze_16853 Corylus avellana HOM05D009695 ORTHO05D007271 1.3e-06 56.6 71 45.1
BcaC07g39776 Brassica carinata HOM05D009695 ORTHO05D007271 1.7e-06 56.2 98 40.8
C08p30020 Brassica napus HOM05D009695 ORTHO05D007271 1.7e-06 56.2 98 40.8
BolC8t50611H Brassica oleracea HOM05D009695 ORTHO05D007271 1.7e-06 56.2 98 40.8
Cfa001682 Carpinus fangiana HOM05D009695 ORTHO05D007271 1.7e-06 56.2 95 35.8
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 1.7e-06 56.2 105 39.0
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 1.7e-06 56.2 73 45.2
Ciclev10033954m.g Citrus clementina HOM05D007861 ORTHO05D007271 3.0e-06 55.5 101 36.6
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 3.0e-06 55.5 87 44.8
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 3.9e-06 55.1 97 34.0
FAN06G4130 Fragaria x ananassa HOM05D019773 ORTHO05D007271 3.9e-06 55.1 98 37.8
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 6.6e-06 54.3 81 38.3
RcHm_v2.0_Chr1g0362761 Rosa chinensis HOM05D019773 ORTHO05D007271 6.6e-06 54.3 108 37.0


User provided reference genes

Program Settings