Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10890 Coffea canephora HOM05D004732 ORTHO05D005424 1.5e-133 479.6 245 100.0
CSS0002562 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.5e-72 276.9 270 55.9
MSTRG.9148 Avicennia marina HOM05D004732 ORTHO05D005424 1.9e-72 276.6 242 60.7
CSS0011754 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-72 276.6 265 55.8
Dinv36389 Davidia involucrata HOM05D004732 ORTHO05D005424 1.4e-70 270.4 260 55.0
Hma1.2p1_0145F.1_g065340 Hydrangea macrophylla HOM05D004732 ORTHO05D005424 2.3e-70 269.6 261 55.6
CAN.G321.58 Capsicum annuum HOM05D004732 ORTHO05D005424 2.6e-69 266.2 273 53.1
vmacro07120 Vaccinium macrocarpon HOM05D004732 ORTHO05D005424 9.7e-69 264.2 262 55.3
Peaxi162Scf00145g01111 Petunia axillaris HOM05D004732 ORTHO05D005424 4.8e-68 261.9 272 52.6
Actinidia18609 Actinidia chinensis HOM05D004732 ORTHO05D005424 2.4e-67 259.6 270 52.6
Nitab4.5_0001450g0120 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.2e-66 257.3 262 52.7
QL08p054295 Quercus lobata HOM05D004732 ORTHO05D005424 6.5e-65 251.5 260 50.8
CSS0018200 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.5e-65 251.1 200 65.5
CiPaw.01G268400 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.1e-64 250.8 256 52.0
FAN10G0773 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.5e-64 250.4 259 51.4
FvH4_7g18740 Fragaria vesca HOM05D004732 ORTHO05D005424 2.5e-64 249.6 247 54.3
FAN06G4015 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.5e-64 249.6 247 54.3
FAN06G4691 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.5e-64 249.6 247 54.3
FAN03G2537 Fragaria x ananassa HOM05D004732 ORTHO05D005424 5.5e-64 248.4 247 53.8
Sabra08G0023400 Salix brachista HOM05D004732 ORTHO05D005424 7.2e-64 248.1 256 52.0
RcHm_v2.0_Chr1g0362511 Rosa chinensis HOM05D004732 ORTHO05D005424 9.4e-64 247.7 247 53.8
FAN01G0719 Fragaria x ananassa HOM05D004732 ORTHO05D005424 1.2e-63 247.3 247 53.4
Thecc.10G084000 Theobroma cacao HOM05D004732 ORTHO05D005424 1.6e-63 246.9 258 53.1
FAN10G1669 Fragaria x ananassa HOM05D004732 ORTHO05D005424 2.1e-63 246.5 247 53.0
Haze_16742 Corylus avellana HOM05D004732 ORTHO05D005424 2.7e-63 246.1 267 50.6
CANSAT56G1580 Cannabis sativa HOM05D004732 ORTHO05D005424 3.6e-63 245.7 253 52.6
Nitab4.5_0006187g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 6.1e-63 245.0 262 50.8
RhsimUnG0118800 Rhododendron simsii HOM05D004732 ORTHO05D005424 8.0e-63 244.6 252 54.0
Prupe.2G208500 Prunus persica HOM05D004732 ORTHO05D005424 1.0e-62 244.2 246 52.4
Sopen11g004120 Solanum pennellii HOM05D004732 ORTHO05D005424 1.0e-62 244.2 261 49.8
Solyc11g008310.3 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-62 243.8 261 49.8
Cpa.g.sc53.137 Carica papaya HOM05D004732 ORTHO05D005424 2.3e-62 243.0 258 50.8
Dinv31236 Davidia involucrata HOM05D004732 ORTHO05D005424 5.2e-62 241.9 269 50.9
CSS0040483 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 8.8e-62 241.1 188 66.0
Cfa001806 Carpinus fangiana HOM05D004732 ORTHO05D005424 1.5e-61 240.4 264 49.6
Nitab4.5_0001359g0060 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.5e-61 240.4 261 51.3
Duzib114G0073 Durio zibethinus HOM05D004732 ORTHO05D005424 2.0e-61 240.0 257 49.4
SalBow4G1144 Salvia bowleyana HOM05D004732 ORTHO05D005424 2.6e-61 239.6 266 48.9
PGSC0003DMG400007420 Solanum tuberosum HOM05D004732 ORTHO05D005424 4.4e-61 238.8 261 49.4
GSVIVG01016214001 Vitis vinifera HOM05D004732 ORTHO05D005424 4.4e-61 238.8 259 52.1
Duzib106G0451 Durio zibethinus HOM05D004732 ORTHO05D005424 1.3e-60 237.3 259 49.0
Manes.07G133148 Manihot esculenta HOM05D004732 ORTHO05D005424 1.7e-60 236.9 260 49.2
Potri.008G035000 Populus trichocarpa HOM05D004732 ORTHO05D005424 1.7e-60 236.9 256 49.6
MD01G1102900 Malus domestica HOM05D004732 ORTHO05D005424 1.1e-59 234.2 246 50.8
COL.COLO4_34217 Corchorus olitorius HOM05D004732 ORTHO05D005424 4.1e-59 232.3 259 49.8
Oeu013844.1 Olea europaea HOM05D004732 ORTHO05D005424 2.0e-58 229.9 272 48.2
DCAR_019084 Daucus carota HOM05D004732 ORTHO05D005424 2.7e-58 229.6 250 50.8
TWI63G1095 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 1.0e-57 227.6 263 48.7
TAR375G0434 Trochodendron aralioides HOM05D004732 ORTHO05D005424 1.7e-57 226.9 255 51.4
Migut.F01953 Erythranthe guttata HOM05D004732 ORTHO05D005424 2.9e-57 226.1 236 51.7
Actinidia06737 Actinidia chinensis HOM05D004732 ORTHO05D005424 3.8e-57 225.7 198 60.1
Eucgr.G02869 Eucalyptus grandis HOM05D004732 ORTHO05D005424 5.0e-57 225.3 266 48.1
HanXRQChr08g0218501 Helianthus annuus HOM05D004732 ORTHO05D005424 5.0e-57 225.3 246 52.0
Potri.010G227400 Populus trichocarpa HOM05D004732 ORTHO05D005424 8.6e-57 224.6 255 47.5
Ciclev10033517m.g Citrus clementina HOM05D004732 ORTHO05D005424 1.5e-56 223.8 266 47.7
CSS0026895 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 1.9e-56 223.4 236 52.1
Sed0004517 Sechium edule HOM05D004732 ORTHO05D005424 2.5e-56 223.0 255 48.2
Manes.10G050600 Manihot esculenta HOM05D004732 ORTHO05D005424 3.2e-56 222.6 260 47.3
Nitab4.5_0000096g0300 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.2e-56 222.6 203 55.7
Nitab4.5_0001278g0020 Nicotiana tabacum HOM05D004732 ORTHO05D005424 3.2e-56 222.6 241 50.2
MELO3C019827.2 Cucumis melo HOM05D004732 ORTHO05D005424 9.5e-56 221.1 256 47.7
Nitab4.5_0001760g0030 Nicotiana tabacum HOM05D004732 ORTHO05D005424 1.6e-55 220.3 205 56.1
Atru.chr12.848 Acer truncatum HOM05D004732 ORTHO05D005424 2.1e-55 219.9 263 46.8
ClCG08G007740 Citrullus lanatus HOM05D004732 ORTHO05D005424 2.8e-55 219.5 256 49.2
Gohir.D06G176100 Gossypium hirsutum HOM05D004732 ORTHO05D005424 2.8e-55 219.5 258 48.8
Gorai.010G207000 Gossypium raimondii HOM05D004732 ORTHO05D005424 2.8e-55 219.5 248 50.0
Nn3g18730 Nelumbo nucifera HOM05D004732 ORTHO05D005424 2.8e-55 219.5 264 48.9
Gohir.A06G168400 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.7e-55 218.8 258 49.2
PGR142G3551 Punica granatum HOM05D004732 ORTHO05D005424 8.0e-55 218.0 253 48.6
CiPaw.02G171900 Carya illinoinensis HOM05D004732 ORTHO05D005424 1.8e-54 216.9 255 48.2
MBI02_g03608_MAGBIO Magnolia biondii HOM05D004732 ORTHO05D005424 1.8e-54 216.9 260 45.4
Peaxi162Scf00176g00155 Petunia axillaris HOM05D004732 ORTHO05D005424 2.3e-54 216.5 206 54.9
Sabra10G0175400 Salix brachista HOM05D004732 ORTHO05D005424 8.8e-54 214.5 256 46.1
Ah.05g176860 Amaranthus hybridus HOM05D004732 ORTHO05D005424 2.0e-53 213.4 238 49.2
Duzib128G0895 Durio zibethinus HOM05D004732 ORTHO05D005424 2.0e-53 213.4 258 47.7
Peaxi162Scf00253g00036 Petunia axillaris HOM05D004732 ORTHO05D005424 2.0e-53 213.4 227 49.3
Sp4g21500 Schrenkiella parvula HOM05D004732 ORTHO05D005424 2.0e-53 213.4 226 51.3
AT2G39170 Arabidopsis thaliana HOM05D004732 ORTHO05D005424 7.5e-53 211.5 226 50.9
Thhalv10017199m.g Eutrema salsugineum HOM05D004732 ORTHO05D005424 7.5e-53 211.5 231 49.8
Lalb_Chr03g0036231 Lupinus albus HOM05D004732 ORTHO05D005424 9.8e-53 211.1 260 46.9
Sc15g0007120 Simmondsia chinensis HOM05D000232 ORTHO05D000145 1.3e-52 210.7 241 49.4
A03p21880 Brassica napus HOM05D004732 ORTHO05D005424 2.8e-52 209.5 227 51.1
BraA03t11424Z Brassica rapa HOM05D004732 ORTHO05D005424 2.8e-52 209.5 227 51.1
AUR62034508 Chenopodium quinoa HOM05D004732 ORTHO05D005424 3.7e-52 209.1 247 46.6
AL4G36450 Arabidopsis lyrata HOM05D004732 ORTHO05D005424 1.1e-51 207.6 232 49.6
AUR62014489 Chenopodium quinoa HOM05D004732 ORTHO05D005424 1.8e-51 206.8 247 45.7
arahy.Tifrunner.gnm1.ann1.94M352 Arachis hypogaea HOM05D004732 ORTHO05D005424 3.1e-51 206.1 273 44.3
C03p25950 Brassica napus HOM05D004732 ORTHO05D005424 4.1e-51 205.7 226 49.6
Carub.0004s2121 Capsella rubella HOM05D004732 ORTHO05D005424 4.1e-51 205.7 226 49.6
Gohir.A10G202350 Gossypium hirsutum HOM05D004732 ORTHO05D005424 9.2e-51 204.5 170 58.8
arahy.Tifrunner.gnm1.ann1.02EZ4F Arachis hypogaea HOM05D004732 ORTHO05D005424 2.0e-50 203.4 264 44.3
BolC3t14980H Brassica oleracea HOM05D004732 ORTHO05D005424 2.7e-50 203.0 233 48.9
TWI38G0470 Tripterygium wilfordii HOM05D004732 ORTHO05D005424 2.7e-50 203.0 170 57.1
CARHR133920 Cardamine hirsuta HOM05D004732 ORTHO05D005424 4.5e-50 202.2 230 50.0
Gohir.D10G210533 Gossypium hirsutum HOM05D004732 ORTHO05D005424 4.5e-50 202.2 264 43.6
Gorai.011G236000 Gossypium raimondii HOM05D004732 ORTHO05D005424 4.5e-50 202.2 264 43.6
Lsat_1_v5_gn_8_20841 Lactuca sativa HOM05D004732 ORTHO05D005424 5.9e-50 201.8 240 50.8
Hund26901 Selenicereus undatus HOM05D004732 ORTHO05D005424 7.8e-50 201.4 249 47.8
Sopen05g034010 Solanum pennellii HOM05D004732 ORTHO05D005424 7.8e-50 201.4 197 51.3
PGSC0003DMG400044193 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.7e-49 200.3 197 51.3
PGSC0003DMG402023369 Solanum tuberosum HOM05D004732 ORTHO05D005424 1.7e-49 200.3 197 51.3
CsaV3_6G036730 Cucumis sativus L. HOM05D004732 ORTHO05D005424 2.3e-49 199.9 236 48.7
Sopen02g011450 Solanum pennellii HOM05D000461 ORTHO05D005424 6.6e-49 198.4 207 48.3
THA.LOC104825219 Tarenaya hassleriana HOM05D004732 ORTHO05D005424 8.6e-49 198.0 259 45.6
Psat6g092840 Pisum sativum HOM05D004732 ORTHO05D005424 1.1e-48 197.6 245 47.3
EL10Ac1g00627 Beta vulgaris HOM05D004732 ORTHO05D005424 1.9e-48 196.8 250 44.0
BcaB01g03649 Brassica carinata HOM05D004732 ORTHO05D005424 3.3e-48 196.1 226 48.2
PSO782G0035 Papaver somniferum HOM05D004732 ORTHO05D005424 3.3e-48 196.1 243 48.1
TPR.G10292 Trifolium pratense HOM05D004732 ORTHO05D005424 3.3e-48 196.1 256 47.3
Aqoxy5G04328 Aquilegia oxysepala HOM05D004732 ORTHO05D005424 4.3e-48 195.7 248 45.2
Psat6g179960 Pisum sativum HOM05D004732 ORTHO05D005424 4.3e-48 195.7 257 45.5
Aa31LG5G20320 Aethionema arabicum HOM05D004732 ORTHO05D005424 7.3e-48 194.9 229 48.5
Medtr1g094180 Medicago truncatula HOM05D004732 ORTHO05D005424 7.3e-48 194.9 254 45.7
BcaC02g12913 Brassica carinata HOM05D004732 ORTHO05D005424 2.1e-47 193.4 232 45.3
Medtr1g050538 Medicago truncatula HOM05D004732 ORTHO05D005424 8.0e-47 191.4 252 44.4
Glyma.10G207600 Glycine max HOM05D004732 ORTHO05D005424 1.0e-46 191.0 262 43.1
Solyc02g033070.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.0e-46 191.0 197 48.2
unitig_37.g12315 Utricularia gibba HOM05D004732 ORTHO05D005424 2.3e-46 189.9 237 47.7
CDE12G0653 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 1.5e-45 187.2 254 40.9
CAN.G694.37 Capsicum annuum HOM05D004732 ORTHO05D005424 2.0e-45 186.8 168 51.2
PSO063G3184 Papaver somniferum HOM05D004732 ORTHO05D005424 5.7e-45 185.3 243 46.9
TPR.G29265 Trifolium pratense HOM05D004732 ORTHO05D005424 5.7e-45 185.3 252 44.8
Lj5g0023337 Lotus japonicus HOM05D004732 ORTHO05D005424 9.8e-45 184.5 263 42.6
Peaxi162Scf00253g00416 Petunia axillaris HOM05D004732 ORTHO05D005424 9.8e-45 184.5 139 61.2
Ca_10542_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.3e-44 184.1 258 43.4
Ca_15771_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 1.3e-44 184.1 258 43.4
Glyma.10G096300 Glycine max HOM05D004732 ORTHO05D005424 1.3e-44 184.1 256 44.5
DCAR_006412 Daucus carota HOM05D004732 ORTHO05D005424 1.1e-43 181.0 260 40.0
SGA_v2.0_scaffold13G06383 Striga asiatica HOM05D002264 ORTHO05D002413 2.4e-43 179.9 239 46.4
Lalb_Chr02g0152071 Lupinus albus HOM05D004732 ORTHO05D005424 2.0e-42 176.8 213 46.9
VMungo0720G2178 Vigna mungo HOM05D004732 ORTHO05D005424 2.7e-42 176.4 253 44.7
Phvul.007G099100 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 1.3e-41 174.1 254 44.5
Phvul.007G246300 Phaseolus vulgaris HOM05D004732 ORTHO05D005424 3.0e-41 172.9 239 44.8
Lj5g0007347 Lotus japonicus HOM05D004732 ORTHO05D005424 5.6e-40 168.7 229 43.7
VMungo0720G2855 Vigna mungo HOM05D004732 ORTHO05D005424 1.6e-39 167.2 236 41.5
CDE04G0408 Ceratophyllum demersum HOM05D004732 ORTHO05D005424 6.8e-38 161.8 150 53.3
Lj2C21T4 Lonicera japonica HOM05D004732 ORTHO05D005424 1.7e-36 157.1 170 51.8
Ca_10759_v3 Cicer arietinum L. HOM05D004732 ORTHO05D005424 2.9e-36 156.4 116 64.7
Glyma.02G159000 Glycine max HOM05D004732 ORTHO05D005424 1.9e-35 153.7 117 63.2
Os08g0152500 Oryza sativa ssp. japonica HOM05D004732 ORTHO05D005424 7.0e-35 151.8 254 38.6
CSS0029312 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 2.0e-34 150.2 105 70.5
Zm00001eb416240 Zea mays HOM05D004732 ORTHO05D005424 1.3e-33 147.5 243 37.9
ATR0810G210 Amborella trichopoda HOM05D004732 ORTHO05D005424 2.3e-33 146.7 274 35.0
HanXRQChr12g0368861 Helianthus annuus HOM05D004732 ORTHO05D005424 1.5e-32 144.1 203 44.8
Solyc05g024140.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 1.4e-30 137.5 132 48.5
CSS0002308 Camellia sinensis var. sinensis HOM05D004732 ORTHO05D005424 4.9e-28 129.0 208 41.8
Sopen05g019060 Solanum pennellii HOM05D004732 ORTHO05D005424 3.6e-23 112.8 124 44.4
HPP92_012913 Vanilla planifolia HOM05D001191 ORTHO05D000979 8.1e-23 111.7 119 45.4
RcHm_v2.0_Chr1g0384391 Rosa chinensis HOM05D004732 ORTHO05D005424 4.9e-20 102.4 149 43.0
Solyc05g055560.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 2.1e-18 97.1 81 56.8
SEGI_03345 Sequoiadendron giganteum HOM05D004732 ORTHO05D005424 6.2e-15 85.5 139 36.0
Solyc05g024170.1 Solanum lycopersicum HOM05D004732 ORTHO05D005424 3.4e-13 79.7 70 52.9
Pp3c13_19230 Physcomitrium patens HOM05D004732 ORTHO05D005424 4.4e-13 79.3 104 36.5
AagrBONN_evm.TU.Sc2ySwM_117.3369 Anthoceros agrestis HOM05D004732 ORTHO05D005424 2.2e-12 77.0 90 37.8
CBR_g30284 Chara braunii HOM05D000004 ORTHO05D000002 8.4e-12 75.1 188 26.6
SMO141G0002 Selaginella moellendorffii HOM05D004732 ORTHO05D005424 2.4e-11 73.6 143 28.7
HPP92_012890 Vanilla planifolia HOM05D004732 ORTHO05D005424 5.4e-11 72.4 249 27.7


User provided reference genes

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