Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10500 Coffea canephora HOM05D005304 ORTHO05D004438 5.8e-65 250.8 127 100.0
Oeu059829.1 Olea europaea HOM05D005304 ORTHO05D004438 3.0e-29 132.1 129 57.4
Oeu032435.1 Olea europaea HOM05D005304 ORTHO05D004438 1.5e-25 119.8 126 57.1
Sabra08G0019800 Salix brachista HOM05D005304 ORTHO05D004438 5.7e-20 101.3 126 48.4
Potri.008G029600 Populus trichocarpa HOM05D005304 ORTHO05D004438 2.8e-19 99.0 126 46.8
Nitab4.5_0000593g0370 Nicotiana tabacum HOM05D005304 ORTHO05D004438 6.3e-19 97.8 115 48.7
Lsat_1_v5_gn_9_70641 Lactuca sativa HOM05D005304 ORTHO05D004438 8.2e-19 97.4 131 47.3
Rhsim03G0110900 Rhododendron simsii HOM05D005304 ORTHO05D004438 1.1e-18 97.1 114 50.9
CSS0003867 Camellia sinensis var. sinensis HOM05D017072 ORTHO05D004438 1.4e-18 96.7 129 48.1
COL.COLO4_32872 Corchorus olitorius HOM05D005304 ORTHO05D004438 1.2e-17 93.6 132 46.2
Potri.010G231600 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.2e-17 93.6 127 45.7
Manes.07G093500 Manihot esculenta HOM05D005304 ORTHO05D004438 3.4e-17 92.0 111 51.4
SalBow6G1975 Salvia bowleyana HOM05D005304 ORTHO05D004438 3.4e-17 92.0 133 45.1
PGSC0003DMG400023483 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.4e-17 92.0 129 48.8
Migut.F01894 Erythranthe guttata HOM05D005304 ORTHO05D004438 7.6e-17 90.9 131 49.6
Lsat_1_v5_gn_8_22700 Lactuca sativa HOM05D005304 ORTHO05D004438 1.3e-16 90.1 127 44.1
MSTRG.27507 Avicennia marina HOM05D005304 ORTHO05D004438 2.9e-16 89.0 123 44.7
TAR636G3524 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.9e-16 89.0 128 44.5
Nitab4.5_0000107g0230 Nicotiana tabacum HOM05D005304 ORTHO05D004438 3.8e-16 88.6 113 52.2
Nn6g35176 Nelumbo nucifera HOM05D005304 ORTHO05D004438 6.5e-16 87.8 127 45.7
Sabra10G0179600 Salix brachista HOM05D005304 ORTHO05D004438 6.5e-16 87.8 111 48.6
Duzib114G0655 Durio zibethinus HOM05D005304 ORTHO05D004438 9.4e-15 84.0 110 46.4
Duzib128G0830 Durio zibethinus HOM05D005304 ORTHO05D004438 1.2e-14 83.6 126 42.1
TAR623G1332 Trochodendron aralioides HOM05D005304 ORTHO05D004438 1.2e-14 83.6 128 45.3
PGSC0003DMG400016914 Solanum tuberosum HOM05D005304 ORTHO05D004438 1.6e-14 83.2 131 43.5
ClCG08G007940 Citrullus lanatus HOM05D005304 ORTHO05D004438 2.1e-14 82.8 128 41.4
Haze_16785 Corylus avellana HOM05D005304 ORTHO05D004438 2.1e-14 82.8 133 39.8
Gorai.009G307700 Gossypium raimondii HOM05D005304 ORTHO05D004438 2.1e-14 82.8 128 46.1
TAR633G0523 Trochodendron aralioides HOM05D005304 ORTHO05D004438 2.7e-14 82.4 127 43.3
CiPaw.01G264700 Carya illinoinensis HOM05D005304 ORTHO05D004438 4.6e-14 81.6 128 43.8
Manes.10G053200 Manihot esculenta HOM05D005304 ORTHO05D004438 4.6e-14 81.6 111 45.0
Manes.10G053300 Manihot esculenta HOM05D005304 ORTHO05D004438 4.6e-14 81.6 123 43.9
TAR369G0323 Trochodendron aralioides HOM05D001401 ORTHO05D002222 4.6e-14 81.6 131 42.7
Sopen05g033870 Solanum pennellii HOM05D005304 ORTHO05D004438 6.1e-14 81.3 125 47.2
CAN.G612.11 Capsicum annuum HOM05D005304 ORTHO05D004438 7.9e-14 80.9 133 42.1
Solyc03g071710.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 7.9e-14 80.9 131 42.0
Sopen03g019970 Solanum pennellii HOM05D005304 ORTHO05D004438 7.9e-14 80.9 131 42.0
Thecc.10G090600 Theobroma cacao HOM05D005304 ORTHO05D004438 7.9e-14 80.9 111 47.7
TWI38G0392 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.0e-13 80.5 124 41.1
TWI63G0695 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.0e-13 80.5 109 48.6
Gohir.A05G290700 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.4e-13 80.1 111 47.7
ClCG05G021460 Citrullus lanatus HOM05D005304 ORTHO05D004438 1.8e-13 79.7 115 45.2
MELO3C019852.2 Cucumis melo HOM05D005304 ORTHO05D004438 1.8e-13 79.7 128 40.6
Gohir.D05G291900 Gossypium hirsutum HOM05D005304 ORTHO05D004438 2.3e-13 79.3 111 47.7
CsaV3_2G032750 Cucumis sativus L. HOM05D005304 ORTHO05D004438 3.9e-13 78.6 128 40.6
Hma1.2p1_0454F.1_g156290 Hydrangea macrophylla HOM05D005304 ORTHO05D004438 3.9e-13 78.6 124 37.9
PGSC0003DMG400027330 Solanum tuberosum HOM05D005304 ORTHO05D004438 3.9e-13 78.6 111 45.0
Potri.010G231700 Populus trichocarpa HOM05D005304 ORTHO05D004438 5.1e-13 78.2 122 41.8
SalBow4G2705 Salvia bowleyana HOM05D005304 ORTHO05D004438 5.1e-13 78.2 115 44.3
Cpa.g.sc128.74 Carica papaya HOM05D005304 ORTHO05D004438 6.7e-13 77.8 111 44.1
FvH4_7g06790 Fragaria vesca HOM05D005304 ORTHO05D004438 6.7e-13 77.8 126 40.5
FAN06G1004 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.7e-13 77.8 126 40.5
FAN10G3090 Fragaria x ananassa HOM05D005304 ORTHO05D004438 6.7e-13 77.8 126 40.5
FAN03G1417 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.8e-13 77.4 124 40.3
Nn2g13894 Nelumbo nucifera HOM05D005304 ORTHO05D004438 1.1e-12 77.0 132 45.5
CiPaw.02G169800 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.5e-12 76.6 111 39.6
Sed0018085 Sechium edule HOM05D005304 ORTHO05D004438 1.5e-12 76.6 128 38.3
QL03p011649 Quercus lobata HOM05D005304 ORTHO05D004438 2.5e-12 75.9 132 38.6
Duzib128G0918 Durio zibethinus HOM05D005304 ORTHO05D004438 3.3e-12 75.5 126 38.9
QL03p021677 Quercus lobata HOM05D005304 ORTHO05D004438 3.3e-12 75.5 116 43.1
RcHm_v2.0_Chr1g0336411 Rosa chinensis HOM05D005304 ORTHO05D004438 3.3e-12 75.5 126 37.3
FAN10G0320 Fragaria x ananassa HOM05D005304 ORTHO05D004438 5.7e-12 74.7 110 42.7
FAN01G2164 Fragaria x ananassa HOM05D005304 ORTHO05D004438 7.4e-12 74.3 124 40.3
Gohir.D01G118400 Gossypium hirsutum HOM05D005304 ORTHO05D004438 9.7e-12 73.9 127 40.9
Gorai.002G144400 Gossypium raimondii HOM05D005304 ORTHO05D004438 9.7e-12 73.9 127 40.9
PGR044G0041 Punica granatum HOM05D005304 ORTHO05D004438 9.7e-12 73.9 143 39.9
Migut.F01597 Erythranthe guttata HOM05D005304 ORTHO05D004438 2.2e-11 72.8 83 47.0
Sabra08G0019700 Salix brachista HOM05D005304 ORTHO05D004438 2.2e-11 72.8 121 42.1
PGR044G1405 Punica granatum HOM05D005304 ORTHO05D004438 2.8e-11 72.4 109 44.0
Prupe.2G095100 Prunus persica HOM05D005304 ORTHO05D004438 3.7e-11 72.0 60 55.0
CAN.G135.30 Capsicum annuum HOM05D021137 ORTHO05D004438 4.8e-11 71.6 76 51.3
Gohir.D05G087300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.8e-11 71.6 78 53.8
Gorai.009G089100 Gossypium raimondii HOM05D005304 ORTHO05D004438 4.8e-11 71.6 78 53.8
Solyc11g007860.1 Solanum lycopersicum HOM05D005304 ORTHO05D004438 4.8e-11 71.6 112 42.9
Sopen11g003720 Solanum pennellii HOM05D005304 ORTHO05D004438 4.8e-11 71.6 112 42.9
Atru.chr12.921 Acer truncatum HOM05D005304 ORTHO05D004438 6.3e-11 71.2 134 39.6
Gohir.A01G128800 Gossypium hirsutum HOM05D005304 ORTHO05D004438 6.3e-11 71.2 127 40.2
FAN02G4580 Fragaria x ananassa HOM05D005304 ORTHO05D004438 8.2e-11 70.9 110 41.8
QL08p052941 Quercus lobata HOM05D005304 ORTHO05D004438 1.1e-10 70.5 55 63.6
Sc20g0001450 Simmondsia chinensis HOM05D005304 ORTHO05D004438 1.4e-10 70.1 73 45.2
MSTRG.9124 Avicennia marina HOM05D005304 ORTHO05D004438 2.4e-10 69.3 118 42.4
FAN12G4274 Fragaria x ananassa HOM05D005304 ORTHO05D004438 3.1e-10 68.9 110 40.9
Cfa001771 Carpinus fangiana HOM05D005304 ORTHO05D004438 4.1e-10 68.6 113 39.8
Ciclev10033091m.g Citrus clementina HOM05D005304 ORTHO05D004438 4.1e-10 68.6 116 41.4
Gohir.A05G084500 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.1e-10 68.6 78 51.3
Sopen11g003740 Solanum pennellii HOM05D021137 ORTHO05D004438 4.1e-10 68.6 70 50.0
Duzib150G0717 Durio zibethinus HOM05D005304 ORTHO05D004438 5.3e-10 68.2 76 52.6
Solyc11g007880.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 6.9e-10 67.8 70 50.0
Glyma.20G190800 Glycine max HOM05D005304 ORTHO05D004438 9.1e-10 67.4 121 38.0
QL01p014739 Quercus lobata HOM05D005304 ORTHO05D004438 1.2e-09 67.0 74 45.9
MELO3C012381.2 Cucumis melo HOM05D005304 ORTHO05D004438 2.0e-09 66.2 113 40.7
CANSAT56G0274 Cannabis sativa HOM05D005304 ORTHO05D004438 2.6e-09 65.9 79 44.3
Thecc.09G296200 Theobroma cacao HOM05D005304 ORTHO05D004438 2.6e-09 65.9 73 49.3
Duzib168G0406 Durio zibethinus HOM05D005304 ORTHO05D004438 3.4e-09 65.5 73 53.4
Sed0010031 Sechium edule HOM05D005304 ORTHO05D004438 3.4e-09 65.5 127 37.8
Manes.11G153500 Manihot esculenta HOM05D005304 ORTHO05D004438 4.5e-09 65.1 113 38.9
CSS0034177 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 7.7e-09 64.3 86 45.3
Ciclev10029845m.g Citrus clementina HOM05D005304 ORTHO05D004438 1.3e-08 63.5 127 38.6
Eucgr.J01033 Eucalyptus grandis HOM05D005304 ORTHO05D004438 1.3e-08 63.5 109 38.5
Potri.009G003400 Populus trichocarpa HOM05D005304 ORTHO05D004438 1.7e-08 63.2 76 43.4
Prupe.6G114400 Prunus persica HOM05D005304 ORTHO05D004438 2.2e-08 62.8 75 48.0
PGSC0003DMG400027332 Solanum tuberosum HOM05D021137 ORTHO05D004438 2.2e-08 62.8 70 48.6
DCAR_019059 Daucus carota HOM05D005304 ORTHO05D004438 2.9e-08 62.4 68 52.9
Eucgr.J00398 Eucalyptus grandis HOM05D005304 ORTHO05D004438 5.0e-08 61.6 77 46.8
Eucgr.B03916 Eucalyptus grandis HOM05D005304 ORTHO05D004438 6.5e-08 61.2 73 47.9
Sed0006013 Sechium edule HOM05D005304 ORTHO05D004438 6.5e-08 61.2 107 40.2
Gohir.A05G393600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-07 60.5 57 56.1
Gohir.D04G021300 Gossypium hirsutum HOM05D005304 ORTHO05D004438 1.1e-07 60.5 57 56.1
Gorai.012G025400 Gossypium raimondii HOM05D005304 ORTHO05D004438 1.1e-07 60.5 57 56.1
VMungo0720G0262 Vigna mungo HOM05D005304 ORTHO05D004438 1.1e-07 60.5 141 33.3
CiPaw.13G144100 Carya illinoinensis HOM05D005304 ORTHO05D004438 1.4e-07 60.1 78 47.4
Phvul.007G141600 Phaseolus vulgaris HOM05D005304 ORTHO05D004438 1.4e-07 60.1 130 33.1
TWI79G0532 Tripterygium wilfordii HOM05D005304 ORTHO05D004438 1.9e-07 59.7 75 49.3
SEGI_05316 Sequoiadendron giganteum HOM05D018057 ORTHO05D004438 2.5e-07 59.3 54 57.4
Sopen11g003730 Solanum pennellii HOM05D021137 ORTHO05D004438 2.5e-07 59.3 69 47.8
CiPaw.14G106000 Carya illinoinensis HOM05D005304 ORTHO05D004438 3.2e-07 58.9 80 42.5
Lj5g0009089 Lotus japonicus HOM05D005304 ORTHO05D004438 3.2e-07 58.9 122 36.9
Gohir.D07G109600 Gossypium hirsutum HOM05D005304 ORTHO05D004438 4.2e-07 58.5 81 45.7
Lalb_Chr02g0151151 Lupinus albus HOM05D005304 ORTHO05D004438 4.2e-07 58.5 95 38.9
Actinidia06715 Actinidia chinensis HOM05D005304 ORTHO05D004438 5.5e-07 58.2 102 44.1
Psat6g173960 Pisum sativum HOM05D005304 ORTHO05D004438 7.2e-07 57.8 137 31.4
Atru.chr3.3495 Acer truncatum HOM05D005304 ORTHO05D004438 9.4e-07 57.4 77 45.5
Lalb_Chr06g0170051 Lupinus albus HOM05D005304 ORTHO05D004438 1.2e-06 57.0 91 40.7
Sed0009329 Sechium edule HOM05D005304 ORTHO05D004438 1.2e-06 57.0 115 36.5
TPR.G31694 Trifolium pratense HOM05D014522 ORTHO05D004438 1.6e-06 56.6 82 42.7
CSS0028161 Camellia sinensis var. sinensis HOM05D005304 ORTHO05D004438 2.1e-06 56.2 54 55.6
SEGI_20981 Sequoiadendron giganteum HOM05D018057 ORTHO05D012767 2.7e-06 55.8 78 42.3
PGR119G0321 Punica granatum HOM05D005304 ORTHO05D004438 3.6e-06 55.5 70 48.6
Aqoxy2G01602 Aquilegia oxysepala HOM05D005304 ORTHO05D004438 4.7e-06 55.1 60 50.0
Solyc11g007870.1 Solanum lycopersicum HOM05D021137 ORTHO05D004438 4.7e-06 55.1 69 46.4
Medtr1g090837 Medicago truncatula HOM05D005304 ORTHO05D004438 6.1e-06 54.7 134 35.8
Ca_10460_v3 Cicer arietinum L. HOM05D005304 ORTHO05D004438 7.9e-06 54.3 59 50.8


User provided reference genes

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