Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10490 Coffea canephora HOM05D006793 ORTHO05D003476 0.0e+00 1143.6 593 100.0
PGSC0003DMG400027329 Solanum tuberosum HOM05D006793 ORTHO05D003476 1.6e-72 278.1 595 38.8
Sopen11g003710 Solanum pennellii HOM05D006793 ORTHO05D003476 2.1e-69 267.7 597 37.2
Solyc11g007850.2 Solanum lycopersicum HOM05D006793 ORTHO05D003476 1.5e-67 261.5 601 36.8
MSTRG.27506 Avicennia marina HOM05D006793 ORTHO05D003476 4.6e-64 250.0 593 33.7
Nitab4.5_0006383g0010 Nicotiana tabacum HOM05D006793 ORTHO05D003476 1.7e-63 248.1 602 33.9
Rhsim03G0110800 Rhododendron simsii HOM05D006793 ORTHO05D003476 4.3e-62 243.4 613 33.4
Nitab4.5_0000593g0350 Nicotiana tabacum HOM05D006793 ORTHO05D003476 9.6e-62 242.3 595 33.8
COL.COLO4_32868 Corchorus olitorius HOM05D006793 ORTHO05D003476 1.6e-61 241.5 620 33.9
Peaxi162Scf00321g00037 Petunia axillaris HOM05D006793 ORTHO05D003476 4.0e-60 236.9 594 35.4
TAR636G1084 Trochodendron aralioides HOM05D006793 ORTHO05D003476 1.4e-57 228.4 604 33.4
Dinv20859 Davidia involucrata HOM05D006793 ORTHO05D003476 3.2e-57 227.3 173 68.8
MD02G1241700 Malus domestica HOM05D006793 ORTHO05D003476 4.2e-57 226.9 621 32.7
MSTRG.404 Avicennia marina HOM05D006793 ORTHO05D003476 7.9e-56 222.6 603 32.3
Atru.chr11.746 Acer truncatum HOM05D006793 ORTHO05D003476 1.0e-55 222.2 602 32.6
Cfa001770 Carpinus fangiana HOM05D006793 ORTHO05D003476 1.8e-55 221.5 632 32.3
TAR633G2614 Trochodendron aralioides HOM05D006793 ORTHO05D009315 2.3e-55 221.1 603 34.7
Duzib114G0110 Durio zibethinus HOM05D006793 ORTHO05D003476 5.6e-54 216.5 615 32.2
TAR476G0002 Trochodendron aralioides HOM05D006793 ORTHO05D003476 9.6e-54 215.7 599 35.1
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla HOM05D006793 ORTHO05D003476 2.8e-53 214.2 591 31.8
Prupe.2G095200 Prunus persica HOM05D006793 ORTHO05D003476 6.2e-53 213.0 590 33.1
Actinidia06714 Actinidia chinensis HOM05D006793 ORTHO05D003476 1.2e-51 208.8 604 32.6
FAN01G0293 Fragaria x ananassa HOM05D006793 ORTHO05D003476 1.2e-51 208.8 616 30.5
FvH4_7g06800 Fragaria vesca HOM05D006793 ORTHO05D003476 1.5e-51 208.4 611 31.3
Dinv31270 Davidia involucrata HOM05D006793 ORTHO05D003476 2.0e-51 208.0 611 31.3
FAN10G1411 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.0e-51 208.0 618 29.9
FAN06G1743 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.6e-51 207.6 611 30.1
Thecc.10G090800 Theobroma cacao HOM05D006793 ORTHO05D003476 2.6e-51 207.6 614 30.9
Gohir.A01G128900 Gossypium hirsutum HOM05D006793 ORTHO05D003476 3.4e-51 207.2 610 30.7
CANSAT56G4476 Cannabis sativa HOM05D006793 ORTHO05D003476 2.9e-50 204.1 615 30.6
Duzib128G0427 Durio zibethinus HOM05D006793 ORTHO05D003476 2.9e-50 204.1 615 31.5
Gorai.002G144500 Gossypium raimondii HOM05D006793 ORTHO05D003476 3.8e-50 203.8 609 30.4
Gohir.D01G118500 Gossypium hirsutum HOM05D006793 ORTHO05D003476 4.9e-50 203.4 608 30.4
QL08p052921 Quercus lobata HOM05D006793 ORTHO05D003476 1.4e-49 201.8 607 33.3
RcHm_v2.0_Chr1g0336511 Rosa chinensis HOM05D006793 ORTHO05D003476 2.5e-49 201.1 618 30.7
Migut.F01893 Erythranthe guttata HOM05D006793 ORTHO05D003476 5.5e-49 199.9 593 30.0
Aqoxy2G01557 Aquilegia oxysepala HOM05D006793 ORTHO05D003476 1.2e-48 198.7 596 33.2
Sabra08G0019600 Salix brachista HOM05D006793 ORTHO05D003476 2.7e-48 197.6 591 32.5
Oeu060293.1 Olea europaea HOM05D006793 ORTHO05D003476 1.9e-46 191.4 605 32.1
Ciclev10031613m.g Citrus clementina HOM05D006793 ORTHO05D003476 2.5e-46 191.0 597 30.8
GSVIVG01005025001 Vitis vinifera HOM05D006793 ORTHO05D003476 7.4e-46 189.5 605 30.6
Haze_16786 Corylus avellana HOM05D006793 ORTHO05D003476 9.6e-46 189.1 581 32.4
SalBow4G0791 Salvia bowleyana HOM05D006793 ORTHO05D003476 1.6e-45 188.3 594 29.3
Potri.008G029500 Populus trichocarpa HOM05D006793 ORTHO05D003476 8.2e-45 186.0 591 32.0
CiPaw.01G264600 Carya illinoinensis HOM05D006793 ORTHO05D003476 1.8e-44 184.9 608 31.6
Manes.10G053400 Manihot esculenta HOM05D006793 ORTHO05D003476 9.0e-44 182.6 592 33.6
Manes.07G093300 Manihot esculenta HOM05D006793 ORTHO05D003476 2.0e-43 181.4 612 30.4
TWI38G2135 Tripterygium wilfordii HOM05D006793 ORTHO05D003476 4.5e-43 180.3 178 57.9
Lalb_Chr21g0313091 Lupinus albus HOM05D006793 ORTHO05D003476 5.8e-43 179.9 164 59.8
Eucgr.G02731 Eucalyptus grandis HOM05D006793 ORTHO05D003476 7.6e-43 179.5 593 31.0
SGA_v2.0_scaffold62G21362 Striga asiatica HOM05D006793 ORTHO05D003476 7.6e-43 179.5 590 30.0
PSO801G0244 Papaver somniferum HOM05D006793 ORTHO05D003476 3.8e-42 177.2 160 63.1
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea HOM05D006793 ORTHO05D003476 4.9e-42 176.8 164 58.5
AUR62030173 Chenopodium quinoa HOM05D006793 ORTHO05D003476 4.9e-42 176.8 230 49.6
PSO339G4934 Papaver somniferum HOM05D006793 ORTHO05D003476 4.9e-42 176.8 347 40.6
AUR62002713 Chenopodium quinoa HOM05D006793 ORTHO05D003476 6.5e-42 176.4 606 31.0
Lalb_Chr02g0151171 Lupinus albus HOM05D006793 ORTHO05D003476 1.4e-41 175.3 164 58.5
PGR142G3005 Punica granatum HOM05D006793 ORTHO05D003476 1.9e-41 174.9 604 31.5
Sc20g0001440 Simmondsia chinensis HOM05D006793 ORTHO05D003476 3.2e-41 174.1 272 44.1
Nn6g35167 Nelumbo nucifera HOM05D006793 ORTHO05D003476 6.1e-40 169.9 595 28.9
Glyma.10G199900 Glycine max HOM05D006793 ORTHO05D003476 1.8e-39 168.3 164 57.3
Nn2g13905 Nelumbo nucifera HOM05D006793 ORTHO05D003476 1.8e-39 168.3 401 37.4
VMungo0720G1705 Vigna mungo HOM05D006793 ORTHO05D003476 2.3e-39 167.9 165 58.2
Potri.010G231900 Populus trichocarpa HOM05D006793 ORTHO05D003476 3.0e-39 167.5 609 30.5
Sabra10G0179700 Salix brachista HOM05D006793 ORTHO05D003476 8.7e-39 166.0 603 31.3
MD07G1075000 Malus domestica HOM05D006793 ORTHO05D003476 2.5e-38 164.5 581 29.8
Lj5g0011528 Lotus japonicus HOM05D006793 ORTHO05D003476 3.3e-38 164.1 189 54.0
Sed0017585 Sechium edule HOM05D006793 ORTHO05D003476 4.3e-38 163.7 173 56.6
Glyma.20G190600 Glycine max HOM05D006793 ORTHO05D003476 5.7e-38 163.3 202 52.5
Phvul.007G141300 Phaseolus vulgaris HOM05D006793 ORTHO05D003476 7.4e-38 162.9 597 29.8
Lsat_1_v5_gn_8_22741 Lactuca sativa HOM05D006793 ORTHO05D003476 2.2e-37 161.4 202 46.5
MELO3C019853.2 Cucumis melo HOM05D006793 ORTHO05D003476 2.8e-37 161.0 205 47.8
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea HOM05D006793 ORTHO05D003476 6.3e-37 159.8 610 30.2
EL10Ac8g19653 Beta vulgaris HOM05D006793 ORTHO05D003476 8.2e-37 159.5 601 30.6
DCAR_019058 Daucus carota HOM05D006793 ORTHO05D003476 1.4e-36 158.7 591 29.8
ClCG08G007950 Citrullus lanatus HOM05D006793 ORTHO05D003476 4.1e-36 157.1 286 43.0
CsaV3_2G032770 Cucumis sativus L. HOM05D006793 ORTHO05D003476 4.1e-36 157.1 200 48.5
MBI17_g07069_MAGBIO Magnolia biondii HOM05D006793 ORTHO05D003476 1.2e-35 155.6 145 61.4
Cpa.g.sc128.73 Carica papaya HOM05D006793 ORTHO05D003476 8.5e-34 149.4 149 53.0
Medtr1g090853 Medicago truncatula HOM05D006793 ORTHO05D003476 8.5e-34 149.4 186 53.8
Psat6g174040 Pisum sativum HOM05D006793 ORTHO05D003476 1.1e-33 149.1 169 53.8
ECA233G3433 Erigeron canadensis HOM05D006793 ORTHO05D003476 5.5e-33 146.7 397 34.5
AL5G32750 Arabidopsis lyrata HOM05D006793 ORTHO05D003476 3.6e-32 144.1 623 27.4
TPR.G37771 Trifolium pratense HOM05D006793 ORTHO05D003476 4.6e-32 143.7 597 28.1
FAN03G3430 Fragaria x ananassa HOM05D006793 ORTHO05D003476 2.3e-31 141.4 576 26.7
Lsat_1_v5_gn_2_103100 Lactuca sativa HOM05D006793 ORTHO05D003476 2.0e-30 138.3 325 36.6
THA.LOC104824314 Tarenaya hassleriana HOM05D006793 ORTHO05D003476 5.7e-30 136.7 617 27.1
Aa31LG10G7260 Aethionema arabicum HOM05D000145 ORTHO05D003476 1.7e-29 135.2 595 28.2
AT3G52170 Arabidopsis thaliana HOM05D006793 ORTHO05D003476 1.7e-29 135.2 617 27.1
Sp5g10100 Schrenkiella parvula HOM05D006793 ORTHO05D003476 1.7e-29 135.2 610 27.4
Carub.0005s1853 Capsella rubella HOM05D006793 ORTHO05D003476 9.1e-28 129.4 623 28.6
CDE03G0520 Ceratophyllum demersum HOM05D048142 ORTHO05D003476 2.2e-26 124.8 513 27.7
Sed0009649 Sechium edule HOM05D006793 ORTHO05D003476 5.0e-26 123.6 107 61.7
vmacro07208 Vaccinium macrocarpon HOM05D000992 ORTHO05D006704 1.4e-25 122.1 565 28.0
BcaC02g09274 Brassica carinata HOM05D006793 ORTHO05D003476 4.2e-25 120.6 302 33.4
HPP92_027826 Vanilla planifolia HOM05D006793 ORTHO05D003476 7.2e-25 119.8 102 61.8
ATR1126G067 Amborella trichopoda HOM05D006793 ORTHO05D003476 1.2e-24 119.0 261 34.5
CARHR161930 Cardamine hirsuta HOM05D006793 ORTHO05D003476 1.6e-24 118.6 223 39.9
ECA238G3554 Erigeron canadensis HOM05D006793 ORTHO05D003476 2.7e-24 117.9 251 35.9
Thhalv10010306m.g Eutrema salsugineum HOM05D006793 ORTHO05D003476 2.7e-24 117.9 600 27.0
BraA04t16415Z Brassica rapa HOM05D000992 ORTHO05D006704 4.7e-24 117.1 146 48.6
A03p48750 Brassica napus HOM05D006793 ORTHO05D003476 1.8e-23 115.2 86 68.6
C04p40750 Brassica napus HOM05D000992 ORTHO05D006704 6.7e-23 113.2 592 26.7
BolC4t25659H Brassica oleracea HOM05D000992 ORTHO05D006704 6.7e-23 113.2 592 26.7
BraA03t13975Z Brassica rapa HOM05D006793 ORTHO05D003476 1.5e-22 112.1 310 31.6
A04p07200 Brassica napus HOM05D006793 ORTHO05D003476 4.4e-22 110.5 600 26.0
Ca_10462_v3 Cicer arietinum L. HOM05D001977 ORTHO05D002246 7.4e-22 109.8 166 46.4
HanXRQChr14g0456191 Helianthus annuus HOM05D006793 ORTHO05D003476 2.8e-21 107.8 239 34.3
HanXRQChr12g0368421 Helianthus annuus HOM05D006793 ORTHO05D003476 1.5e-19 102.1 243 35.4
CSS0025253 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D000001 2.0e-19 101.7 169 40.2
Os12g0528000 Oryza sativa ssp. japonica HOM05D006793 ORTHO05D003476 3.8e-18 97.4 64 70.3
Zm00001eb137780 Zea mays HOM05D006793 ORTHO05D003476 1.9e-17 95.1 394 29.4
unitig_899.g14485 Utricularia gibba HOM05D006793 ORTHO05D003476 5.5e-17 93.6 303 30.4
Zm00001eb410830 Zea mays HOM05D006793 ORTHO05D003476 5.5e-17 93.6 213 34.7
CSS0050149 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.8e-15 88.6 311 28.3
MD02G1237300 Malus domestica HOM05D006793 ORTHO05D003476 3.9e-15 87.4 590 23.9
SEGI_29881 Sequoiadendron giganteum HOM05D006793 ORTHO05D003476 3.9e-15 87.4 221 30.8
Dinv20860 Davidia involucrata HOM05D006793 ORTHO05D003476 3.1e-12 77.8 91 46.2
MSTRG.22259 Avicennia marina HOM05D008057 ORTHO05D003476 4.5e-11 73.9 79 44.3
Cpa.g.sc124.3 Carica papaya HOM05D008057 ORTHO05D003476 1.0e-10 72.8 125 35.2
MBI03_g11904_MAGBIO Magnolia biondii HOM05D008057 ORTHO05D003476 1.0e-10 72.8 82 43.9
ClCG03G001720 Citrullus lanatus HOM05D008057 ORTHO05D003476 1.7e-10 72.0 108 40.7
Cc00_g01550 Coffea canephora HOM05D008057 ORTHO05D003476 2.2e-10 71.6 73 49.3
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla HOM05D008057 ORTHO05D003476 2.2e-10 71.6 78 43.6
CsaV3_1G033920 Cucumis sativus L. HOM05D008057 ORTHO05D003476 2.9e-10 71.2 241 31.5
Oeu046660.1 Olea europaea HOM05D006793 ORTHO05D003476 2.9e-10 71.2 350 24.9
CiPaw.16G075800 Carya illinoinensis HOM05D008057 ORTHO05D003476 5.0e-10 70.5 93 38.7
CDE04G2158 Ceratophyllum demersum HOM05D008057 ORTHO05D003476 5.0e-10 70.5 81 48.1
Peaxi162Scf00171g00028 Petunia axillaris HOM05D008057 ORTHO05D003476 6.5e-10 70.1 79 45.6
Lj2g0026608 Lotus japonicus HOM05D008057 ORTHO05D003476 8.5e-10 69.7 147 32.0
Gohir.A03G090600 Gossypium hirsutum HOM05D008057 ORTHO05D003476 1.1e-09 69.3 90 41.1
Nn3g18533 Nelumbo nucifera HOM05D008057 ORTHO05D003476 1.5e-09 68.9 85 41.2
Cfa017812 Carpinus fangiana HOM05D008057 ORTHO05D003476 1.9e-09 68.6 79 41.8
Duzib068G0937 Durio zibethinus HOM05D008057 ORTHO05D003476 1.9e-09 68.6 92 37.0
TPR.G31356 Trifolium pratense HOM05D008057 ORTHO05D003476 2.5e-09 68.2 61 52.5
Gohir.D02G118700 Gossypium hirsutum HOM05D008057 ORTHO05D003476 4.2e-09 67.4 90 40.0
Nitab4.5_0009307g0060 Nicotiana tabacum HOM05D008057 ORTHO05D003476 9.4e-09 66.2 77 45.5
Gorai.005G135100 Gossypium raimondii HOM05D008057 ORTHO05D003476 1.2e-08 65.9 90 38.9
Hund06726 Selenicereus undatus HOM05D008057 ORTHO05D003476 1.2e-08 65.9 141 34.0
AT5G58210 Arabidopsis thaliana HOM05D012436 ORTHO05D003476 1.6e-08 65.5 92 41.3
QL10p035701 Quercus lobata HOM05D008057 ORTHO05D003476 1.6e-08 65.5 69 47.8
MELO3C020667.2 Cucumis melo HOM05D008057 ORTHO05D003476 2.1e-08 65.1 209 30.6
Psat1g117960 Pisum sativum HOM05D008057 ORTHO05D003476 2.1e-08 65.1 81 43.2
CARHR272010 Cardamine hirsuta HOM05D012436 ORTHO05D003476 3.6e-08 64.3 63 46.0
Ciclev10020800m.g Citrus clementina HOM05D008057 ORTHO05D003476 3.6e-08 64.3 80 38.8
TAR311G0002 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.6e-08 64.3 95 37.9
GSVIVG01024238001 Vitis vinifera HOM05D008057 ORTHO05D003476 3.6e-08 64.3 81 42.0
Atru.chr9.28 Acer truncatum HOM05D008057 ORTHO05D003476 4.7e-08 63.9 134 29.9
PGR044G1600 Punica granatum HOM05D008057 ORTHO05D003476 4.7e-08 63.9 77 41.6
COL.COLO4_33681 Corchorus olitorius HOM05D002656 ORTHO05D003062 6.1e-08 63.5 75 42.7
Potri.018G151900 Populus trichocarpa HOM05D008057 ORTHO05D003476 6.1e-08 63.5 85 36.5
SGA_v2.0_scaffold14G06996 Striga asiatica HOM05D008057 ORTHO05D003476 6.1e-08 63.5 116 31.9
Thhalv10014108m.g Eutrema salsugineum HOM05D012436 ORTHO05D003476 8.0e-08 63.2 54 55.6
Lalb_Chr14g0370111 Lupinus albus HOM05D008057 ORTHO05D003476 8.0e-08 63.2 111 33.3
Sp6g19870 Schrenkiella parvula HOM05D012436 ORTHO05D003476 8.0e-08 63.2 72 43.1
AL8G34310 Arabidopsis lyrata HOM05D012436 ORTHO05D003476 1.0e-07 62.8 54 53.7
CSS0004401 Camellia sinensis var. sinensis HOM05D006793 ORTHO05D003476 1.0e-07 62.8 41 78.0
Sed0004109 Sechium edule HOM05D008057 ORTHO05D003476 1.0e-07 62.8 76 43.4
Dinv22201 Davidia involucrata HOM05D008057 ORTHO05D003476 1.4e-07 62.4 108 36.1
Nitab4.5_0008182g0020 Nicotiana tabacum HOM05D008057 ORTHO05D003476 1.4e-07 62.4 61 47.5
Medtr6g069010 Medicago truncatula HOM05D008057 ORTHO05D003476 1.8e-07 62.0 323 26.6
ECA233G4523 Erigeron canadensis HOM05D008057 ORTHO05D003476 2.3e-07 61.6 86 36.0
PSO782G0732 Papaver somniferum HOM05D045975 ORTHO05D003476 2.3e-07 61.6 115 30.4
Rhsim10G0138900 Rhododendron simsii HOM05D008057 ORTHO05D003476 3.0e-07 61.2 76 40.8
TAR629G2050 Trochodendron aralioides HOM05D008057 ORTHO05D003476 3.0e-07 61.2 260 25.0
Carub.0008s1875 Capsella rubella HOM05D012436 ORTHO05D003476 6.8e-07 60.1 126 33.3
Migut.N02713 Erythranthe guttata HOM05D008057 ORTHO05D003476 6.8e-07 60.1 195 27.2
TWI81G0899 Tripterygium wilfordii HOM05D008057 ORTHO05D003476 6.8e-07 60.1 104 34.6
Os02g0638000 Oryza sativa ssp. japonica HOM05D008057 ORTHO05D003476 1.2e-06 59.3 239 25.9
unitig_746.g26880 Utricularia gibba HOM05D008057 ORTHO05D003476 1.2e-06 59.3 78 44.9
A03p12360 Brassica napus HOM05D012436 ORTHO05D003476 1.5e-06 58.9 90 37.8
DCAR_014755 Daucus carota HOM05D008057 ORTHO05D003476 1.5e-06 58.9 70 40.0
Glyma.09G160700 Glycine max HOM05D008057 ORTHO05D003476 1.5e-06 58.9 294 25.2
BcaB01g04549 Brassica carinata HOM05D012436 ORTHO05D003476 2.0e-06 58.5 50 50.0
BolC3t13894H Brassica oleracea HOM05D012436 ORTHO05D003476 2.0e-06 58.5 50 50.0
BraA03t10548Z Brassica rapa HOM05D012436 ORTHO05D003476 2.0e-06 58.5 50 50.0
Sabra18G0127300 Salix brachista HOM05D008057 ORTHO05D003476 2.0e-06 58.5 236 23.7
PSO063G6649 Papaver somniferum HOM05D045975 ORTHO05D003476 2.6e-06 58.2 134 26.9
Phvul.004G136200 Phaseolus vulgaris HOM05D008057 ORTHO05D003476 2.6e-06 58.2 150 27.3
Aqoxy3G04343 Aquilegia oxysepala HOM05D008057 ORTHO05D003476 3.4e-06 57.8 172 25.0
PGSC0003DMG401015209 Solanum tuberosum HOM05D008057 ORTHO05D003476 3.4e-06 57.8 69 44.9
Oeu050291.1 Olea europaea HOM05D008057 ORTHO05D003476 5.7e-06 57.0 196 25.0
Sed0002498 Sechium edule HOM05D008057 ORTHO05D003476 5.7e-06 57.0 74 43.2
Sc12g0007990 Simmondsia chinensis HOM05D008057 ORTHO05D003476 5.7e-06 57.0 131 28.2
Glyma.16G210200 Glycine max HOM05D008057 ORTHO05D003476 9.7e-06 56.2 291 24.1
Zm00001eb248340 Zea mays HOM05D046263 ORTHO05D003476 9.7e-06 56.2 80 38.8


User provided reference genes

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