Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 1.4e-67 259.6 141 100.0
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 7.9e-23 110.9 135 48.9
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 2.3e-22 109.4 134 49.3
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 3.0e-22 109.0 132 45.5
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 3.9e-22 108.6 133 48.9
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 3.3e-21 105.5 132 45.5
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 8.2e-20 100.9 133 43.6
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 1.8e-19 99.8 128 47.7
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 2.0e-18 96.3 141 39.0
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 1.3e-17 93.6 138 42.0
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 1.7e-17 93.2 144 43.1
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 2.9e-17 92.4 142 38.7
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 1.1e-16 90.5 78 60.3
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 4.2e-16 88.6 79 57.0
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 4.2e-16 88.6 125 38.4
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 7.2e-16 87.8 115 44.3
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 9.4e-16 87.4 124 43.5
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 1.6e-15 86.7 125 43.2
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 2.1e-15 86.3 115 43.5
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 2.7e-15 85.9 138 37.0
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 4.7e-15 85.1 125 43.2
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 1.4e-14 83.6 135 40.0
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 2.3e-14 82.8 125 40.0
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 3.0e-14 82.4 143 40.6
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 3.0e-14 82.4 119 38.7
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 3.9e-14 82.0 139 36.7
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 3.9e-14 82.0 67 50.7
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 6.7e-14 81.3 122 42.6
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 8.8e-14 80.9 119 41.2
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.5e-13 80.1 132 41.7
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 3.3e-13 79.0 144 36.8
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 4.4e-13 78.6 88 40.9
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 5.7e-13 78.2 71 50.7
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 7.4e-13 77.8 71 53.5
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 9.7e-13 77.4 62 56.5
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 9.7e-13 77.4 62 56.5
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 1.3e-12 77.0 123 34.1
Lsat_1_v5_gn_2_102881 Lactuca sativa HOM05D007333 ORTHO05D008874 1.7e-12 76.6 134 40.3
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 1.7e-12 76.6 89 46.1
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 2.8e-12 75.9 123 35.0
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 2.8e-12 75.9 141 36.2
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 3.7e-12 75.5 112 42.0
CSS0002382 Camellia sinensis var. sinensis HOM05D007333 ORTHO05D008874 4.8e-12 75.1 104 42.3
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 6.3e-12 74.7 80 45.0
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 3.1e-11 72.4 89 41.6
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 3.1e-11 72.4 62 54.8
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 3.1e-11 72.4 70 44.3
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 3.1e-11 72.4 59 50.8
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 4.1e-11 72.0 132 35.6
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.1e-11 72.0 74 41.9
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 4.1e-11 72.0 74 41.9
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 5.3e-11 71.6 93 36.6
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 7.0e-11 71.2 130 36.2
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 7.0e-11 71.2 130 32.3
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 7.0e-11 71.2 86 37.2
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 9.1e-11 70.9 74 40.5
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 9.1e-11 70.9 74 40.5
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 1.2e-10 70.5 89 47.2
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 1.6e-10 70.1 128 35.2
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 2.0e-10 69.7 59 49.2
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 2.6e-10 69.3 99 40.4
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 2.6e-10 69.3 50 52.0
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 3.5e-10 68.9 135 32.6
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 3.5e-10 68.9 129 34.1
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 3.5e-10 68.9 61 50.8
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 3.5e-10 68.9 140 34.3
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 4.5e-10 68.6 86 43.0
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 4.5e-10 68.6 134 37.3
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 5.9e-10 68.2 124 36.3
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 1.0e-09 67.4 82 41.5
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 1.0e-09 67.4 81 42.0
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 1.0e-09 67.4 72 47.2
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 1.3e-09 67.0 124 35.5
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 1.7e-09 66.6 87 44.8
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 1.7e-09 66.6 87 44.8
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 2.2e-09 66.2 74 39.2
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 6.5e-09 64.7 131 30.5
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 8.5e-09 64.3 128 33.6
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 8.5e-09 64.3 125 29.6
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 8.5e-09 64.3 138 29.7
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 8.5e-09 64.3 138 31.2
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 1.5e-08 63.5 73 42.5
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 1.5e-08 63.5 120 32.5
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.9e-08 63.2 140 33.6
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 3.2e-08 62.4 67 46.3
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 5.5e-08 61.6 133 32.3
MBI17_g20230_MAGBIO Magnolia biondii HOM05D007333 ORTHO05D008874 1.2e-07 60.5 66 45.5
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 1.6e-07 60.1 120 40.8
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 2.7e-07 59.3 93 31.2
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 1.0e-06 57.4 74 39.2
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 1.0e-06 57.4 136 28.7
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 2.3e-06 56.2 78 34.6
SEGI_06473 Sequoiadendron giganteum HOM05D007333 ORTHO05D008874 2.3e-06 56.2 68 39.7
HPP92_009761 Vanilla planifolia HOM05D065211 ORTHO05D008874 8.8e-06 54.3 63 46.0


User provided reference genes

Program Settings