Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10300 Coffea canephora HOM05D004192 ORTHO05D004917 0.0e+00 1701.8 858 100.0
Dinv31284 Davidia involucrata HOM05D004192 ORTHO05D004917 0.0e+00 1385.5 860 80.3
CSS0020257 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1360.1 864 77.5
Peaxi162Scf00398g00058 Petunia axillaris HOM05D004192 ORTHO05D004917 0.0e+00 1303.9 867 75.7
Migut.F01661 Erythranthe guttata HOM05D004192 ORTHO05D004917 0.0e+00 1291.2 856 75.2
Thecc.10G097700 Theobroma cacao HOM05D004192 ORTHO05D004917 0.0e+00 1285.4 859 74.5
MSTRG.8112 Avicennia marina HOM05D004192 ORTHO05D004917 0.0e+00 1281.9 854 75.9
COL.COLO4_34171 Corchorus olitorius HOM05D004192 ORTHO05D004917 0.0e+00 1280.0 862 73.9
CANSAT56G0904 Cannabis sativa HOM05D004192 ORTHO05D004917 0.0e+00 1272.7 861 73.2
Rhsim03G0109700 Rhododendron simsii HOM05D004192 ORTHO05D004917 0.0e+00 1272.7 963 69.1
TWI38G0502 Tripterygium wilfordii HOM05D004192 ORTHO05D004917 0.0e+00 1271.9 858 74.0
Sopen11g003530 Solanum pennellii HOM05D004192 ORTHO05D004917 0.0e+00 1262.3 850 73.5
PGR044G0968 Punica granatum HOM05D004192 ORTHO05D004917 0.0e+00 1260.4 852 73.9
Solyc11g007670.3 Solanum lycopersicum HOM05D004192 ORTHO05D004917 0.0e+00 1257.7 850 73.3
Gohir.A12G088900 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1256.9 849 73.1
Gorai.008G097500 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1256.9 849 73.1
Lsat_1_v5_gn_8_23081 Lactuca sativa HOM05D004192 ORTHO05D004917 0.0e+00 1256.5 863 73.0
FAN10G1549 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1254.2 857 74.2
FvH4_7g06400 Fragaria vesca HOM05D004192 ORTHO05D004917 0.0e+00 1252.3 857 74.2
Nn6g35085 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1252.3 832 74.2
SGA_v2.0_scaffold62G21320 Striga asiatica HOM05D004192 ORTHO05D004917 0.0e+00 1251.5 916 70.2
Eucgr.J01026 Eucalyptus grandis HOM05D004192 ORTHO05D004917 0.0e+00 1248.0 837 74.0
CsaV3_2G032910 Cucumis sativus L. HOM05D004192 ORTHO05D004917 0.0e+00 1247.6 866 73.1
ClCG08G008030 Citrullus lanatus HOM05D004192 ORTHO05D004917 0.0e+00 1247.3 863 73.2
FAN01G1656 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1247.3 857 73.5
ECA233G2766 Erigeron canadensis HOM05D004192 ORTHO05D004917 0.0e+00 1245.7 864 72.3
MELO3C019875.2 Cucumis melo HOM05D004192 ORTHO05D004917 0.0e+00 1241.5 865 73.1
FAN06G5118 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1239.2 885 71.9
Gorai.002G144900 Gossypium raimondii HOM05D004192 ORTHO05D004917 0.0e+00 1232.6 856 72.8
Gohir.A01G129200 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1231.9 856 72.8
Gohir.D01G118800 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1231.1 856 72.8
DCAR_019044 Daucus carota HOM05D004192 ORTHO05D004917 0.0e+00 1230.7 858 72.5
MD07G1072600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1229.9 865 72.6
HanXRQChr08g0218151 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1228.8 864 71.2
RcHm_v2.0_Chr1g0334491 Rosa chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1226.8 862 72.4
Potri.010G233600 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1225.3 851 71.9
HanXRQChr12g0368431 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1222.2 863 71.8
Duzib114G0707 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1221.1 817 74.8
Potri.008G026900 Populus trichocarpa HOM05D004192 ORTHO05D004917 0.0e+00 1220.3 859 70.7
MD02G1244600 Malus domestica HOM05D004192 ORTHO05D004917 0.0e+00 1219.5 867 71.0
Hund22302 Selenicereus undatus HOM05D004192 ORTHO05D004917 0.0e+00 1215.3 856 70.9
Duzib128G0631 Durio zibethinus HOM05D004192 ORTHO05D004917 0.0e+00 1213.4 854 71.8
Phvul.007G105800 Phaseolus vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1211.4 861 69.9
Lj3A933G36 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1209.9 873 70.8
TAR623G0905 Trochodendron aralioides HOM05D004192 ORTHO05D004917 0.0e+00 1205.3 862 70.9
EL10Ac4g08605 Beta vulgaris HOM05D004192 ORTHO05D004917 0.0e+00 1204.5 853 70.1
Glyma.10G201300 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1204.1 864 69.3
Lalb_Chr02g0151281 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1202.2 861 70.2
Lj2C27G6 Lonicera japonica HOM05D004192 ORTHO05D004917 0.0e+00 1201.8 951 67.1
Nn2g13965 Nelumbo nucifera HOM05D004192 ORTHO05D004917 0.0e+00 1201.8 858 70.6
THA.LOC104816452 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1201.8 862 70.9
FAN03G2327 Fragaria x ananassa HOM05D004192 ORTHO05D004917 0.0e+00 1198.7 857 71.6
Gohir.D12G087300 Gossypium hirsutum HOM05D004192 ORTHO05D004917 0.0e+00 1198.0 849 70.8
VMungo0720G1942 Vigna mungo HOM05D004192 ORTHO05D004917 0.0e+00 1196.4 861 69.6
Sed0026233 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1191.0 875 70.3
Sabra08G0018400 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1190.6 883 67.7
Sc20g0001360 Simmondsia chinensis HOM05D004192 ORTHO05D004917 0.0e+00 1188.3 832 72.0
arahy.Tifrunner.gnm1.ann1.CA0PQ2 Arachis hypogaea HOM05D004192 ORTHO05D004917 0.0e+00 1186.8 861 69.9
Nitab4.5_0000593g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 0.0e+00 1186.0 885 69.0
Prupe.2G090700 Prunus persica HOM05D004192 ORTHO05D004917 0.0e+00 1181.4 768 76.0
Manes.10G054700 Manihot esculenta HOM05D004192 ORTHO05D004917 0.0e+00 1175.6 770 75.2
Lalb_Chr21g0313171 Lupinus albus HOM05D004192 ORTHO05D004917 0.0e+00 1171.8 860 69.3
THA.LOC104823194 Tarenaya hassleriana HOM05D004192 ORTHO05D004917 0.0e+00 1169.8 866 69.4
Psat6g175320 Pisum sativum HOM05D004192 ORTHO05D004917 0.0e+00 1167.5 865 67.6
CiPaw.13G035500 Carya illinoinensis HOM05D004192 ORTHO05D004917 0.0e+00 1166.8 857 69.0
Ca_10484_v3 Cicer arietinum L. HOM05D004192 ORTHO05D004917 0.0e+00 1165.2 860 68.1
AT3G10550 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1163.3 860 68.1
Aqoxy1G00968 Aquilegia oxysepala HOM05D004192 ORTHO05D004917 0.0e+00 1162.9 840 69.5
AL3G21970 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1162.1 864 67.9
Carub.0003s0979 Capsella rubella HOM05D004192 ORTHO05D004917 0.0e+00 1161.4 862 67.6
Sp3g08830 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1156.4 862 67.5
Lj5g0013826 Lotus japonicus HOM05D004192 ORTHO05D004917 0.0e+00 1156.0 863 68.3
Thhalv10020062m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1155.2 863 67.8
GSVIVG01034690001 Vitis vinifera HOM05D004192 ORTHO05D004917 0.0e+00 1150.2 754 75.9
CSS0018543 Camellia sinensis var. sinensis HOM05D004192 ORTHO05D004917 0.0e+00 1149.4 731 77.7
Sabra10G0181200 Salix brachista HOM05D004192 ORTHO05D004917 0.0e+00 1149.0 933 64.4
Ah.04g163610 Amaranthus hybridus HOM05D004192 ORTHO05D004917 0.0e+00 1145.6 847 68.8
Glyma.20G189100 Glycine max HOM05D004192 ORTHO05D004917 0.0e+00 1143.6 878 66.9
PSO339G1524 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1138.3 866 67.2
PSO384G3766 Papaver somniferum HOM05D004192 ORTHO05D004917 0.0e+00 1137.5 866 67.3
CAN.G135.58 Capsicum annuum HOM05D004192 ORTHO05D004917 0.0e+00 1136.7 738 75.9
ATR0820G117 Amborella trichopoda HOM05D004192 ORTHO05D004917 0.0e+00 1132.5 837 68.2
Sed0024945 Sechium edule HOM05D004192 ORTHO05D004917 0.0e+00 1127.9 765 73.9
Thhalv10012689m.g Eutrema salsugineum HOM05D004192 ORTHO05D004917 0.0e+00 1127.1 862 66.2
Aa31LG3G3400 Aethionema arabicum HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 862 66.7
TPR.G2517 Trifolium pratense HOM05D004192 ORTHO05D004917 0.0e+00 1126.3 943 63.1
BcaNung05805 Brassica carinata HOM05D004192 ORTHO05D004917 0.0e+00 1116.7 864 65.9
BolC1t05384H Brassica oleracea HOM05D004192 ORTHO05D004917 0.0e+00 1116.7 864 65.9
HanXRQChr14g0456301 Helianthus annuus HOM05D004192 ORTHO05D004917 0.0e+00 1108.6 872 66.5
AL6G14190 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 0.0e+00 1095.9 855 64.9
Sp6g38220 Schrenkiella parvula HOM05D004192 ORTHO05D004917 0.0e+00 1090.5 864 64.5
AT5G04540 Arabidopsis thaliana HOM05D004192 ORTHO05D004917 0.0e+00 1082.8 851 63.6
BraA01t04242Z Brassica rapa HOM05D004192 ORTHO05D004917 0.0e+00 1082.4 838 65.9
Haze_02630 Corylus avellana HOM05D004192 ORTHO05D004917 0.0e+00 1082.4 1018 58.2
C02p01980 Brassica napus HOM05D004192 ORTHO05D004917 0.0e+00 1082.0 861 64.1
Atru.chr12.952 Acer truncatum HOM05D004192 ORTHO05D004917 0.0e+00 1075.8 704 75.4
BraA02t04817Z Brassica rapa HOM05D004192 ORTHO05D004917 5.9e-312 1074.7 837 65.5
BolC9t59967H Brassica oleracea HOM05D004192 ORTHO05D004917 5.9e-312 1073.9 837 64.6
BolC2t06155H Brassica oleracea HOM05D004192 ORTHO05D004917 8.8e-311 1070.1 861 63.9
HPP92_001744 Vanilla planifolia HOM05D004192 ORTHO05D004917 1.2e-310 1069.7 834 66.1
Carub.0006s0348 Capsella rubella HOM05D004192 ORTHO05D004917 4.9e-309 1064.3 851 63.3
A10p31560 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-308 1063.1 838 64.2
BraA10t45202Z Brassica rapa HOM05D004192 ORTHO05D004917 1.1e-308 1063.1 838 64.2
Actinidia18569 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.6e-291 1006.1 697 73.2
BcaC06g32164 Brassica carinata HOM05D004192 ORTHO05D004917 4.6e-291 1004.6 748 66.3
Aa31LG11G5410 Aethionema arabicum HOM05D004192 ORTHO05D004917 6.0e-291 1004.2 860 61.3
PGSC0003DMG402027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.3e-285 986.5 736 68.1
BcaB04g21235 Brassica carinata HOM05D004192 ORTHO05D004917 1.7e-285 986.1 720 68.5
CDE06G2538 Ceratophyllum demersum HOM05D004192 ORTHO05D004917 7.1e-284 980.7 719 68.8
ECA238G3394 Erigeron canadensis HOM05D004192 ORTHO05D004917 4.6e-283 978.0 794 64.0
SEGI_16113 Sequoiadendron giganteum HOM05D004192 ORTHO05D004917 2.3e-282 975.7 845 60.8
AUR62041537 Chenopodium quinoa HOM05D004192 ORTHO05D004917 2.4e-279 965.7 839 60.4
AUR62041535 Chenopodium quinoa HOM05D004192 ORTHO05D004917 1.2e-278 963.4 838 61.0
unitig_736.g22321 Utricularia gibba HOM05D004192 ORTHO05D004917 8.8e-258 894.0 861 56.9
C09p72230 Brassica napus HOM05D004192 ORTHO05D004917 4.2e-252 875.2 678 65.8
CiPaw.14G028000 Carya illinoinensis HOM05D004192 ORTHO05D004917 2.6e-241 839.3 532 77.3
AagrBONN_evm.TU.Sc2ySwM_368.2559 Anthoceros agrestis HOM05D004192 ORTHO05D004917 4.8e-240 835.1 858 53.1
Lsat_1_v5_gn_2_102840 Lactuca sativa HOM05D004192 ORTHO05D004917 2.7e-235 819.3 777 59.3
Medtr1g492590 Medicago truncatula HOM05D004192 ORTHO05D004917 1.2e-214 750.7 539 70.1
Pp3c18_20050 Physcomitrium patens HOM05D004192 ORTHO05D004917 5.0e-213 745.3 861 48.0
Mapoly0087s0031 Marchantia polymorpha HOM05D004192 ORTHO05D004917 3.7e-208 729.2 862 47.8
Pp3c22_15020 Physcomitrium patens HOM05D004192 ORTHO05D004917 2.4e-207 726.5 864 46.9
CARHR085080 Cardamine hirsuta HOM05D004192 ORTHO05D004917 1.7e-205 720.3 471 75.6
Nitab4.5_0003408g0020 Nicotiana tabacum HOM05D004192 ORTHO05D004917 5.1e-197 692.2 755 52.1
A01p41680 Brassica napus HOM05D004192 ORTHO05D004917 1.1e-180 637.9 464 70.7
Os08g0556700 Oryza sativa ssp. japonica HOM05D004192 ORTHO05D004917 4.0e-170 602.8 537 60.1
Oeu026557.1 Olea europaea HOM05D004192 ORTHO05D004917 7.9e-166 588.6 764 47.3
SHI21315 Sapria himalayana HOM05D004192 ORTHO05D004917 7.9e-166 588.6 468 64.5
Ciclev10031728m.g Citrus clementina HOM05D004192 ORTHO05D004917 1.1e-164 584.7 391 74.2
MBI17_g20218_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 1.9e-164 583.9 457 66.1
Hma1.2p1_0492F.1_g164750 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 2.8e-163 580.1 383 75.2
vmacro07217 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 5.0e-160 569.3 493 63.3
SMO367G0225 Selaginella moellendorffii HOM05D004192 ORTHO05D004917 1.4e-159 567.8 809 43.5
CARHR208730 Cardamine hirsuta HOM05D004192 ORTHO05D004917 6.7e-157 558.9 477 62.1
Zm00001eb039660 Zea mays HOM05D004192 ORTHO05D004917 1.1e-127 461.8 460 54.8
MBI17_g20211_MAGBIO Magnolia biondii HOM05D004192 ORTHO05D004917 8.0e-126 455.7 352 66.5
Cpa.g.sc942.1 Carica papaya HOM05D004192 ORTHO05D004917 1.7e-123 448.0 297 72.1
CARHR085070 Cardamine hirsuta HOM05D004192 ORTHO05D004917 8.3e-123 445.7 388 58.5
arahy.Tifrunner.gnm1.ann1.VIL3TT Arachis hypogaea HOM05D004192 ORTHO05D004917 7.2e-119 432.6 312 69.2
AL3G45840 Arabidopsis lyrata HOM05D004192 ORTHO05D004917 1.6e-118 431.4 365 64.4
Medtr1g092570 Medicago truncatula HOM05D004192 ORTHO05D004917 3.6e-118 430.3 326 66.6
SHI21312 Sapria himalayana HOM05D004192 ORTHO05D004917 4.6e-105 386.7 315 63.5
Oeu026556.1 Olea europaea HOM05D004192 ORTHO05D004917 9.9e-92 342.4 249 69.1
HanXRQChr14g0456291 Helianthus annuus HOM05D004192 ORTHO05D004917 3.0e-88 330.9 290 58.6
Hma1.2p1_0492F.1_g164740 Hydrangea macrophylla HOM05D004192 ORTHO05D004917 3.9e-88 330.5 204 76.5
Psat0s4326g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.2e-68 265.8 176 70.5
Zm00001eb215930 Zea mays HOM05D004192 ORTHO05D004917 6.7e-64 250.0 185 64.9
vmacro07216 Vaccinium macrocarpon HOM05D004192 ORTHO05D004917 2.1e-62 245.0 221 58.8
Cpa.g.c33984 Carica papaya HOM05D004192 ORTHO05D004917 3.1e-61 241.1 156 76.9
PGSC0003DMG401027320 Solanum tuberosum HOM05D004192 ORTHO05D004917 1.1e-53 216.1 159 69.2
Psat0s3097g0040 Pisum sativum HOM05D004192 ORTHO05D004917 1.3e-48 199.1 140 71.4
Cfa026029 Carpinus fangiana HOM05D004192 ORTHO05D004917 8.7e-48 196.4 605 28.9
QL04p040652 Quercus lobata HOM05D004192 ORTHO05D004917 8.5e-43 179.9 245 46.9
TAR371G0071 Trochodendron aralioides HOM05D004192 ORTHO05D004917 8.8e-32 143.3 128 64.1
SHI21313 Sapria himalayana HOM05D004192 ORTHO05D004917 7.4e-31 140.2 72 97.2
Actinidia18568 Actinidia chinensis HOM05D004192 ORTHO05D004917 1.8e-29 135.6 107 65.4
QL04p040713 Quercus lobata HOM05D004192 ORTHO05D004917 7.7e-28 130.2 121 62.8
BcaB02g10205 Brassica carinata HOM05D004192 ORTHO05D004917 2.2e-27 128.6 125 57.6
Oeu021819.1 Olea europaea HOM05D004192 ORTHO05D004917 3.2e-26 124.8 75 84.0
Nitab4.5_0003408g0010 Nicotiana tabacum HOM05D004192 ORTHO05D004917 1.0e-24 119.8 106 60.4
RcHm_v2.0_Chr4g0433221 Rosa chinensis HOM05D004192 ORTHO05D004917 4.7e-17 94.4 59 79.7
RcHm_v2.0_Chr0c16g0499861 Rosa chinensis HOM05D004192 ORTHO05D004917 4.0e-16 91.3 58 77.6
Hma1.2p1_0492F.1_g164730 Hydrangea macrophylla HOM05D011107 ORTHO05D012795 4.4e-15 87.8 66 68.2
Rhsim01G0150300 Rhododendron simsii HOM05D004192 ORTHO05D004917 1.3e-14 86.3 92 48.9
Lsat_1_v5_gn_6_80241 Lactuca sativa HOM05D004192 ORTHO05D004917 6.8e-08 63.9 44 75.0
Oeu032726.1 Olea europaea HOM05D004192 ORTHO05D004917 1.7e-06 59.3 85 50.6
RcHm_v2.0_Chr2g0132831 Rosa chinensis HOM05D004192 ORTHO05D004917 2.8e-06 58.5 37 78.4


User provided reference genes

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