Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g10170 Coffea canephora HOM05D003496 ORTHO05D003909 6.1e-61 237.3 118 100.0
Cc10_g07230 Coffea canephora HOM05D003496 ORTHO05D003909 6.2e-53 210.7 120 90.8
Manes.18G067700 Manihot esculenta HOM05D003496 ORTHO05D003909 3.0e-39 165.2 121 68.6
TAR628G0803 Trochodendron aralioides HOM05D003496 ORTHO05D003909 1.1e-38 163.3 120 69.2
Cc02_g31800 Coffea canephora HOM05D003496 ORTHO05D003909 1.5e-38 162.9 118 74.6
Prupe.1G516800 Prunus persica HOM05D003496 ORTHO05D003909 1.6e-37 159.5 120 66.7
Thecc.08G107000 Theobroma cacao HOM05D003496 ORTHO05D003909 1.1e-36 156.8 120 67.5
vmacro13001 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 1.1e-36 156.8 120 70.8
Nitab4.5_0000232g0220 Nicotiana tabacum HOM05D003496 ORTHO05D003909 3.1e-36 155.2 117 69.2
QL12p036753 Quercus lobata HOM05D003496 ORTHO05D003909 3.1e-36 155.2 119 68.1
GSVIVG01009028001 Vitis vinifera HOM05D003496 ORTHO05D003909 3.1e-36 155.2 120 66.7
TWI56G0580 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 4.0e-36 154.8 120 65.8
Rhsim06G0082300 Rhododendron simsii HOM05D003496 ORTHO05D003909 5.2e-36 154.5 120 72.5
Cfa013633 Carpinus fangiana HOM05D003496 ORTHO05D003909 2.0e-35 152.5 120 65.8
vmacro18796 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.0e-35 152.5 120 70.0
MSTRG.1476 Avicennia marina HOM05D003496 ORTHO05D003909 2.6e-35 152.1 120 63.3
vmacro18810 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.6e-35 152.1 120 70.0
Actinidia27185 Actinidia chinensis HOM05D003496 ORTHO05D003909 5.8e-35 151.0 120 69.2
Gohir.A05G226500 Gossypium hirsutum HOM05D003496 ORTHO05D003909 5.8e-35 151.0 120 65.8
Duzib093G0574 Durio zibethinus HOM05D003496 ORTHO05D003909 9.9e-35 150.2 120 64.2
Gorai.009G237200 Gossypium raimondii HOM05D003496 ORTHO05D003909 1.3e-34 149.8 120 65.8
CSS0008540 Camellia sinensis var. sinensis HOM05D003496 ORTHO05D003909 1.7e-34 149.4 132 62.9
Gohir.D05G229200 Gossypium hirsutum HOM05D003496 ORTHO05D003909 2.2e-34 149.1 120 65.0
CiPaw.08G045100 Carya illinoinensis HOM05D003496 ORTHO05D003909 3.8e-34 148.3 120 64.2
Actinidia10321 Actinidia chinensis HOM05D003496 ORTHO05D003909 6.4e-34 147.5 120 67.5
Ciclev10000237m.g Citrus clementina HOM05D003496 ORTHO05D003909 6.4e-34 147.5 120 62.5
Aqoxy6G00790 Aquilegia oxysepala HOM05D003496 ORTHO05D003909 1.9e-33 146.0 119 63.0
CAN.G101.20 Capsicum annuum HOM05D003496 ORTHO05D003909 1.9e-33 146.0 119 68.9
MD15G1368600 Malus domestica HOM05D003496 ORTHO05D003909 1.9e-33 146.0 120 63.3
Migut.C01172 Erythranthe guttata HOM05D003496 ORTHO05D003909 3.2e-33 145.2 120 65.0
CANSAT25G1637 Cannabis sativa HOM05D003496 ORTHO05D003909 4.1e-33 144.8 120 62.5
Phvul.008G173500 Phaseolus vulgaris HOM05D003496 ORTHO05D003909 4.1e-33 144.8 119 63.9
VMungo0647G2412 Vigna mungo HOM05D003496 ORTHO05D003909 4.1e-33 144.8 119 64.7
Lalb_Chr10g0102381 Lupinus albus HOM05D003496 ORTHO05D003909 9.2e-33 143.7 118 63.6
TWI12G1339 Tripterygium wilfordii HOM05D003496 ORTHO05D003909 2.7e-32 142.1 120 60.8
Oeu012925.3 Olea europaea HOM05D003496 ORTHO05D003909 6.0e-32 141.0 134 59.7
Atru.chr13.1191 Acer truncatum HOM05D003496 ORTHO05D003909 7.8e-32 140.6 120 63.3
Atru.chr13.1193 Acer truncatum HOM05D003496 ORTHO05D003909 7.8e-32 140.6 120 63.3
Eucgr.F00323 Eucalyptus grandis HOM05D003496 ORTHO05D003909 7.8e-32 140.6 120 62.5
Glyma.13G089100 Glycine max HOM05D003496 ORTHO05D003909 1.7e-31 139.4 119 62.2
SGA_v2.0_scaffold24G10490 Striga asiatica HOM05D003496 ORTHO05D003909 3.9e-31 138.3 122 61.5
Sed0000627 Sechium edule HOM05D003496 ORTHO05D003909 8.6e-31 137.1 120 62.5
THA.LOC104810802 Tarenaya hassleriana HOM05D003496 ORTHO05D003909 8.6e-31 137.1 120 60.0
DCAR_031330 Daucus carota HOM05D003496 ORTHO05D003909 2.5e-30 135.6 122 60.7
RcHm_v2.0_Chr7g0243631 Rosa chinensis HOM05D003496 ORTHO05D003909 3.3e-30 135.2 119 61.3
Glyma.14G173000 Glycine max HOM05D003496 ORTHO05D003909 9.6e-30 133.7 124 61.3
RcHm_v2.0_Chr7g0239001 Rosa chinensis HOM05D003496 ORTHO05D003909 9.6e-30 133.7 119 60.5
arahy.Tifrunner.gnm1.ann1.92N1A9 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.6e-29 131.7 120 60.0
arahy.Tifrunner.gnm1.ann1.ZN2UT8 Arachis hypogaea HOM05D003496 ORTHO05D003909 3.6e-29 131.7 120 60.0
FAN08G2234 Fragaria x ananassa HOM05D003496 ORTHO05D003909 4.7e-29 131.3 118 61.0
Sopen04g029300 Solanum pennellii HOM05D003496 ORTHO05D003909 4.7e-29 131.3 120 62.5
TPR.G7904 Trifolium pratense HOM05D003496 ORTHO05D003909 4.7e-29 131.3 119 58.0
Ah.05g169990 Amaranthus hybridus HOM05D003496 ORTHO05D003909 8.1e-29 130.6 125 56.8
Sabra02G0075900 Salix brachista HOM05D003496 ORTHO05D003909 1.1e-28 130.2 120 60.0
Nn1g05352 Nelumbo nucifera HOM05D003496 ORTHO05D003909 1.4e-28 129.8 120 56.7
FAN04G0832 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.8e-28 129.4 118 60.2
FvH4_5g37341 Fragaria vesca HOM05D003496 ORTHO05D003909 4.0e-28 128.3 118 59.3
Medtr5g063730 Medicago truncatula HOM05D003496 ORTHO05D003909 5.2e-28 127.9 116 59.5
Cpa.g.sc36.129 Carica papaya HOM05D003496 ORTHO05D003909 6.9e-28 127.5 119 58.0
FAN13G0595 Fragaria x ananassa HOM05D003496 ORTHO05D003909 6.9e-28 127.5 118 58.5
HanXRQChr13g0402531 Helianthus annuus HOM05D003496 ORTHO05D003909 1.2e-27 126.7 123 56.9
Aa31LG7G6200 Aethionema arabicum HOM05D003496 ORTHO05D003909 1.5e-27 126.3 123 54.5
FAN18G3881 Fragaria x ananassa HOM05D003496 ORTHO05D003909 3.4e-27 125.2 118 58.5
RcHm_v2.0_Chr0c28g0501001 Rosa chinensis HOM05D003496 ORTHO05D003909 4.4e-27 124.8 119 58.0
RcHm_v2.0_Chr0c28g0501031 Rosa chinensis HOM05D003496 ORTHO05D003909 4.4e-27 124.8 119 58.0
RcHm_v2.0_Chr7g0243591 Rosa chinensis HOM05D003496 ORTHO05D003909 4.4e-27 124.8 119 58.0
Solyc04g074120.4 Solanum lycopersicum HOM05D003496 ORTHO05D003909 4.4e-27 124.8 116 61.2
AT1G22260 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 1.3e-26 123.2 125 55.2
CsaV3_3G048690 Cucumis sativus L. HOM05D003496 ORTHO05D003909 1.3e-26 123.2 114 63.2
Lj1g0018735 Lotus japonicus HOM05D003496 ORTHO05D003909 1.7e-26 122.9 122 58.2
Psat2g073040 Pisum sativum HOM05D003496 ORTHO05D003909 2.2e-26 122.5 119 54.6
ECA233G4469 Erigeron canadensis HOM05D003496 ORTHO05D003909 4.9e-26 121.3 123 57.7
EL10Ac1g01221 Beta vulgaris HOM05D003496 ORTHO05D003909 1.4e-25 119.8 126 51.6
PSO063G1836 Papaver somniferum HOM05D003496 ORTHO05D003909 2.4e-25 119.0 121 54.5
Hund16907 Selenicereus undatus HOM05D003496 ORTHO05D003909 2.4e-25 119.0 125 54.4
Hund16910 Selenicereus undatus HOM05D003496 ORTHO05D003909 2.4e-25 119.0 125 54.4
Nitab4.5_0005777g0080 Nicotiana tabacum HOM05D003496 ORTHO05D003909 4.2e-25 118.2 105 61.9
PSO832G0815 Papaver somniferum HOM05D003496 ORTHO05D003909 5.4e-25 117.9 121 53.7
Lsat_1_v5_gn_1_3120 Lactuca sativa HOM05D003496 ORTHO05D003909 1.2e-24 116.7 123 56.9
Dinv44773 Davidia involucrata HOM05D003496 ORTHO05D003909 1.6e-24 116.3 120 58.3
CARHR022600 Cardamine hirsuta HOM05D003496 ORTHO05D003909 2.7e-24 115.5 122 54.9
PGSC0003DMG400006412 Solanum tuberosum HOM05D003496 ORTHO05D003909 3.5e-24 115.2 114 59.6
Thhalv10018107m.g Eutrema salsugineum HOM05D003496 ORTHO05D003909 6.0e-24 114.4 120 54.2
PGR042G0634 Punica granatum HOM05D003496 ORTHO05D003909 7.8e-24 114.0 116 55.2
Carub.0001s2183 Capsella rubella HOM05D003496 ORTHO05D003909 1.3e-23 113.2 123 53.7
AUR62027754 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.3e-23 113.2 130 50.8
FvH4_6g40021 Fragaria vesca HOM05D003496 ORTHO05D003909 2.3e-23 112.5 111 55.9
AL1G35730 Arabidopsis lyrata HOM05D003496 ORTHO05D003909 8.7e-23 110.5 122 51.6
ATR0782G233 Amborella trichopoda HOM05D003496 ORTHO05D003909 1.1e-22 110.2 120 55.0
AUR62038519 Chenopodium quinoa HOM05D003496 ORTHO05D003909 1.5e-22 109.8 130 50.0
A07p27660 Brassica napus HOM05D003496 ORTHO05D003909 3.3e-22 108.6 121 52.1
Duzib093G1287 Durio zibethinus HOM05D003496 ORTHO05D003909 3.3e-22 108.6 119 53.8
HanXRQChr13g0402471 Helianthus annuus HOM05D003496 ORTHO05D003909 7.3e-22 107.5 111 55.0
Lj5C255G21 Lonicera japonica HOM05D003496 ORTHO05D003909 1.3e-21 106.7 114 54.4
Peaxi162Scf00041g01739 Petunia axillaris HOM05D003496 ORTHO05D003909 2.8e-21 105.5 89 66.3
Actinidia30770 Actinidia chinensis HOM05D003496 ORTHO05D003909 4.8e-21 104.8 86 66.3
BcaC08g45430 Brassica carinata HOM05D003496 ORTHO05D003909 6.2e-21 104.4 121 50.4
C06p30630 Brassica napus HOM05D003496 ORTHO05D003909 6.2e-21 104.4 121 50.4
BolC6t38227H Brassica oleracea HOM05D003496 ORTHO05D003909 6.2e-21 104.4 121 50.4
Sp5g33310 Schrenkiella parvula HOM05D003496 ORTHO05D003909 1.8e-20 102.8 119 49.6
BraA07t30407Z Brassica rapa HOM05D003496 ORTHO05D003909 9.0e-20 100.5 121 48.8
TPR.G7899 Trifolium pratense HOM05D003496 ORTHO05D003909 1.2e-19 100.1 108 52.8
vmacro21271 Vaccinium macrocarpon HOM05D003496 ORTHO05D003909 2.6e-19 99.0 86 66.3
A07p43490 Brassica napus HOM05D003496 ORTHO05D003909 3.4e-19 98.6 122 50.0
ClCG11G015270 Citrullus lanatus HOM05D003496 ORTHO05D003909 4.5e-19 98.2 106 55.7
RcHm_v2.0_Chr7g0243551 Rosa chinensis HOM05D003496 ORTHO05D003909 4.5e-19 98.2 118 50.0
AT1G22275 Arabidopsis thaliana HOM05D003496 ORTHO05D003909 5.8e-19 97.8 122 48.4
BcaB03g15988 Brassica carinata HOM05D003496 ORTHO05D003909 5.8e-19 97.8 122 50.0
BcaC08g47393 Brassica carinata HOM05D003496 ORTHO05D003909 5.8e-19 97.8 122 50.0
HPP92_004286 Vanilla planifolia HOM05D003496 ORTHO05D003909 1.7e-18 96.3 112 50.9
Os04g0452500 Oryza sativa ssp. japonica HOM05D003496 ORTHO05D003909 3.8e-18 95.1 110 52.7
BcaB03g15987 Brassica carinata HOM05D003496 ORTHO05D003909 4.9e-18 94.7 122 48.4
BcaB03g15989 Brassica carinata HOM05D003496 ORTHO05D003909 4.9e-18 94.7 122 48.4
BolC6t40236H Brassica oleracea HOM05D003496 ORTHO05D003909 4.9e-18 94.7 122 48.4
Zm00001eb423930 Zea mays HOM05D003496 ORTHO05D003909 1.1e-17 93.6 113 53.1
BraA07t31861Z Brassica rapa HOM05D003496 ORTHO05D003909 2.4e-17 92.4 122 47.5
C06p52130 Brassica napus HOM05D003496 ORTHO05D003909 4.6e-16 88.2 126 46.0
Ca_05276_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 1.8e-15 86.3 114 47.4
Ca_05283_v3 Cicer arietinum L. HOM05D003496 ORTHO05D003909 1.8e-15 86.3 114 47.4
Oeu046297.1 Olea europaea HOM05D003496 ORTHO05D003909 2.3e-15 85.9 77 61.0
unitig_899.g14555 Utricularia gibba HOM05D003496 ORTHO05D003909 1.1e-14 83.6 169 34.9
MELO3C003452.2 Cucumis melo HOM05D003496 ORTHO05D003909 5.6e-14 81.3 81 58.0
COL.COLO4_16402 Corchorus olitorius HOM05D003496 ORTHO05D003909 2.1e-13 79.3 80 55.0
CDE10G0763 Ceratophyllum demersum HOM05D003496 ORTHO05D003909 1.8e-12 76.3 93 46.2
RcHm_v2.0_Chr7g0243501 Rosa chinensis HOM05D003496 ORTHO05D003909 3.1e-12 75.5 55 65.5
FvH4_5g37878 Fragaria vesca HOM05D003496 ORTHO05D003909 1.3e-10 70.1 79 49.4
TPR.G16743 Trifolium pratense HOM05D003496 ORTHO05D003909 2.2e-10 69.3 70 55.7
BcaB02g07153 Brassica carinata HOM05D003496 ORTHO05D003909 4.9e-10 68.2 85 48.2
SHI03714 Sapria himalayana HOM05D003496 ORTHO05D003909 6.4e-10 67.8 78 48.7
RcHm_v2.0_Chr7g0227211 Rosa chinensis HOM05D003496 ORTHO05D003909 1.9e-09 66.2 70 57.1
Carub.0001s2181 Capsella rubella HOM05D003496 ORTHO05D003909 2.4e-09 65.9 87 46.0
Lj5C269T10 Lonicera japonica HOM05D003496 ORTHO05D003909 1.6e-08 63.2 53 62.3
RcHm_v2.0_Chr2g0168611 Rosa chinensis HOM05D003496 ORTHO05D003909 4.6e-08 61.6 61 55.7
FAN18G0240 Fragaria x ananassa HOM05D003496 ORTHO05D003909 1.3e-07 60.1 95 42.1
TPR.G33088 Trifolium pratense HOM05D003496 ORTHO05D003909 3.3e-06 55.5 28 89.3


User provided reference genes

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