Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09740 Coffea canephora HOM05D003594 ORTHO05D004268 0.0e+00 1640.2 848 100.0
Cc02_g29780 Coffea canephora HOM05D003594 ORTHO05D004268 0.0e+00 1395.9 821 89.5
Cc02_g29810 Coffea canephora HOM05D003594 ORTHO05D004268 2.0e-286 989.2 576 90.8
Dinv11846 Davidia involucrata HOM05D003594 ORTHO05D004268 1.8e-231 806.6 827 56.7
CSS0019720 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 6.1e-219 765.0 837 53.4
CSS0031708 Camellia sinensis var. sinensis HOM05D003594 ORTHO05D004268 1.8e-218 763.5 834 53.4
TAR622G0410 Trochodendron aralioides HOM05D003594 ORTHO05D004268 7.7e-214 748.0 848 53.5
Lj3C928G2 Lonicera japonica HOM05D003594 ORTHO05D004268 3.2e-212 742.7 826 51.7
Peaxi162Scf00173g00417 Petunia axillaris HOM05D003594 ORTHO05D004268 5.2e-210 735.3 835 50.5
Nitab4.5_0001437g0090 Nicotiana tabacum HOM05D003594 ORTHO05D004268 2.5e-204 716.5 834 50.0
Solyc11g007010.2 Solanum lycopersicum HOM05D003594 ORTHO05D004268 3.2e-204 716.1 827 49.5
Sopen11g002930 Solanum pennellii HOM05D003594 ORTHO05D004268 2.1e-203 713.4 827 49.5
CiPaw.13G039500 Carya illinoinensis HOM05D003594 ORTHO05D004268 1.4e-202 710.7 836 51.1
Oeu025587.1 Olea europaea HOM05D003594 ORTHO05D004268 2.3e-202 709.9 910 47.5
Nitab4.5_0005622g0060 Nicotiana tabacum HOM05D003594 ORTHO05D004268 1.5e-201 707.2 850 48.4
Actinidia06697 Actinidia chinensis HOM05D003594 ORTHO05D004268 2.6e-201 706.4 833 50.5
PGSC0003DMG400023977 Solanum tuberosum HOM05D003594 ORTHO05D004268 7.5e-201 704.9 824 49.3
Migut.F00912 Erythranthe guttata HOM05D003594 ORTHO05D004268 2.4e-199 699.9 737 53.6
Nn4g23115 Nelumbo nucifera HOM05D003594 ORTHO05D004268 2.4e-199 699.9 858 48.8
Rhsim03G0098900 Rhododendron simsii HOM05D003594 ORTHO05D004268 1.7e-197 693.7 844 48.9
Cfa011279 Carpinus fangiana HOM05D003594 ORTHO05D004268 4.0e-194 682.6 846 49.3
CAN.G645.3 Capsicum annuum HOM05D003594 ORTHO05D004268 7.7e-190 668.3 787 48.8
DCAR_006339 Daucus carota HOM05D003594 ORTHO05D004268 2.1e-187 660.2 839 48.3
QL04p046058 Quercus lobata HOM05D003594 ORTHO05D004268 2.6e-185 653.3 798 50.1
Cc02_g09730 Coffea canephora HOM05D003594 ORTHO05D004268 4.4e-185 652.5 353 96.0
TWI38G1480 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 5.4e-183 645.6 825 47.2
PSO478G3548 Papaver somniferum HOM05D003594 ORTHO05D004268 3.5e-182 642.9 838 48.2
PSO017G2985 Papaver somniferum HOM05D003594 ORTHO05D004268 5.9e-182 642.1 844 47.9
RcHm_v2.0_Chr7g0211051 Rosa chinensis HOM05D003594 ORTHO05D004268 1.0e-181 641.3 707 52.1
Thecc.10G111800 Theobroma cacao HOM05D003594 ORTHO05D004268 1.1e-180 637.9 833 47.5
SalBow6G4638 Salvia bowleyana HOM05D003594 ORTHO05D004268 1.9e-180 637.1 846 45.0
MD17G1284000 Malus domestica HOM05D003594 ORTHO05D004268 1.2e-179 634.4 838 47.0
Prupe.3G003400 Prunus persica HOM05D003594 ORTHO05D004268 3.1e-178 629.8 840 47.5
Potri.010G238000 Populus trichocarpa HOM05D003594 ORTHO05D004268 6.8e-178 628.6 826 48.4
FAN18G3192 Fragaria x ananassa HOM05D003594 ORTHO05D004268 5.8e-177 625.5 651 53.8
Sabra10G0186200 Salix brachista HOM05D003594 ORTHO05D004268 2.2e-176 623.6 840 48.2
Lalb_Chr10g0100231 Lupinus albus HOM05D003594 ORTHO05D004268 2.9e-176 623.2 753 48.6
Aqoxy3G00687_Aqoxy3G00688 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 8.3e-176 621.7 856 46.1
Manes.11G108901 Manihot esculenta HOM05D003594 ORTHO05D004268 1.4e-175 620.9 829 47.5
FAN18G4146 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.9e-175 620.5 651 53.5
Eucgr.J00989 Eucalyptus grandis HOM05D003594 ORTHO05D004268 3.2e-175 619.8 833 45.3
Lsat_1_v5_gn_2_104580 Lactuca sativa HOM05D003594 ORTHO05D004268 4.1e-175 619.4 657 52.4
VMungo0331G0994 Vigna mungo HOM05D003594 ORTHO05D004268 9.2e-175 618.2 837 45.5
FvH4_5g22640 Fragaria vesca HOM05D003594 ORTHO05D004268 2.0e-174 617.1 651 53.1
Glyma.16G027600 Glycine max HOM05D003594 ORTHO05D004268 2.0e-174 617.1 841 45.5
Glyma.07G058700 Glycine max HOM05D003594 ORTHO05D004268 2.7e-174 616.7 840 45.7
Duzib052G0830 Durio zibethinus HOM05D003594 ORTHO05D004268 8.6e-173 611.7 625 53.3
Gohir.D06G176700 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.6e-171 607.4 827 44.9
Gohir.A06G169100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 8.1e-171 605.1 829 44.0
FAN04G1757 Fragaria x ananassa HOM05D003594 ORTHO05D004268 4.4e-169 599.4 648 52.0
Lj1g0028024 Lotus japonicus HOM05D003594 ORTHO05D004268 1.3e-168 597.8 622 53.5
Ciclev10027803m.g Citrus clementina HOM05D003594 ORTHO05D004268 1.9e-167 594.0 827 44.6
ECA238G3867 Erigeron canadensis HOM05D003594 ORTHO05D004268 2.4e-167 593.6 673 50.7
Gorai.010G208000 Gossypium raimondii HOM05D003594 ORTHO05D004268 4.1e-167 592.8 836 43.7
Phvul.010G110700 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 7.1e-167 592.0 841 43.9
GSVIVG01032568001 Vitis vinifera HOM05D003594 ORTHO05D004268 6.0e-166 589.0 821 45.4
Cpa.g.sc183.16 Carica papaya HOM05D003594 ORTHO05D004268 7.8e-166 588.6 707 52.1
Medtr3g075460 Medicago truncatula HOM05D003594 ORTHO05D004268 1.7e-165 587.4 644 49.8
CANSAT56G3624 Cannabis sativa HOM05D003594 ORTHO05D004268 2.3e-165 587.0 848 45.0
COL.COLO4_28858 Corchorus olitorius HOM05D003594 ORTHO05D004268 1.1e-164 584.7 841 44.2
MBI02_g14487_MAGBIO Magnolia biondii HOM05D003594 ORTHO05D004268 9.5e-164 581.6 868 46.5
Lj3g0004598 Lotus japonicus HOM05D003594 ORTHO05D004268 2.8e-163 580.1 649 50.7
FAN08G1578 Fragaria x ananassa HOM05D003594 ORTHO05D004268 1.5e-161 574.3 712 47.2
Ca_23589_v3 Cicer arietinum L. HOM05D003594 ORTHO05D004268 7.6e-161 572.0 562 52.5
HanXRQChr11g0342181 Helianthus annuus HOM05D003594 ORTHO05D004268 1.3e-160 571.2 634 50.3
SGA_v2.0_scaffold295G47526 Striga asiatica HOM05D003594 ORTHO05D004268 1.4e-159 567.8 882 43.3
Sed0011677 Sechium edule HOM05D003594 ORTHO05D004268 3.2e-159 566.6 572 52.4
ClCG09G007450 Citrullus lanatus HOM05D003594 ORTHO05D004268 2.7e-158 563.5 686 46.8
ATR0737G134 Amborella trichopoda HOM05D003594 ORTHO05D004268 1.0e-157 561.6 629 50.1
Sed0007749 Sechium edule HOM05D003594 ORTHO05D004268 3.0e-157 560.1 706 46.5
THA.LOC104820658 Tarenaya hassleriana HOM05D003594 ORTHO05D004268 3.0e-157 560.1 655 49.2
Medtr8g028030 Medicago truncatula HOM05D003594 ORTHO05D004268 1.5e-156 557.8 829 42.9
Carub.0001s2847 Capsella rubella HOM05D003594 ORTHO05D004268 4.9e-152 542.7 720 44.2
Sc06g0002330 Simmondsia chinensis HOM05D003594 ORTHO05D004268 4.9e-152 542.7 829 42.8
Thhalv10006813m.g Eutrema salsugineum HOM05D003594 ORTHO05D004268 1.9e-148 530.8 619 48.9
HPP92_013069 Vanilla planifolia HOM05D003594 ORTHO05D004268 2.8e-147 526.9 835 41.4
A09p36300 Brassica napus HOM05D003594 ORTHO05D004268 3.6e-147 526.6 595 49.2
BcaC05g27050 Brassica carinata HOM05D003594 ORTHO05D004268 6.2e-147 525.8 593 49.2
ClCG05G018390 Citrullus lanatus HOM05D003594 ORTHO05D004268 8.1e-147 525.4 685 45.1
C05p29080 Brassica napus HOM05D003594 ORTHO05D004268 3.1e-146 523.5 593 49.1
BolC5t31639H Brassica oleracea HOM05D003594 ORTHO05D004268 3.1e-146 523.5 593 49.1
BraA09t39154Z Brassica rapa HOM05D003594 ORTHO05D004268 3.1e-146 523.5 595 49.4
Psat4g159240 Pisum sativum HOM05D003594 ORTHO05D004268 5.3e-146 522.7 824 41.3
Nn3g17199 Nelumbo nucifera HOM05D003594 ORTHO05D004268 4.5e-145 519.6 459 59.9
TPR.G8757 Trifolium pratense HOM05D003594 ORTHO05D004268 5.8e-145 519.2 532 52.3
Sp1g26080 Schrenkiella parvula HOM05D003594 ORTHO05D004268 6.4e-144 515.8 627 47.0
BcaB07g32622 Brassica carinata HOM05D003594 ORTHO05D004268 1.1e-143 515.0 574 49.0
Ah.04g162260 Amaranthus hybridus HOM05D003594 ORTHO05D004268 1.9e-143 514.2 849 40.2
AT1G30240 Arabidopsis thaliana HOM05D003594 ORTHO05D004268 1.9e-143 514.2 619 47.2
AL1G44160 Arabidopsis lyrata HOM05D003594 ORTHO05D004268 9.3e-143 511.9 623 47.2
Dinv06533 Davidia involucrata HOM05D003594 ORTHO05D004268 1.2e-142 511.5 573 51.7
BcaC01g00173 Brassica carinata HOM05D003594 ORTHO05D004268 1.6e-142 511.1 588 48.5
C03p76500 Brassica napus HOM05D003594 ORTHO05D004268 2.1e-142 510.8 588 48.3
arahy.Tifrunner.gnm1.ann1.8EA83L Arachis hypogaea HOM05D003594 ORTHO05D004268 2.7e-142 510.4 870 39.3
BcaB03g12203 Brassica carinata HOM05D003594 ORTHO05D004268 2.7e-142 510.4 586 49.1
BolC3t19907H Brassica oleracea HOM05D003594 ORTHO05D004268 2.7e-142 510.4 715 43.8
EL10Ac4g08659 Beta vulgaris HOM05D003594 ORTHO05D004268 1.3e-141 508.1 825 40.2
MELO3C012354.2 Cucumis melo HOM05D003594 ORTHO05D004268 8.7e-141 505.4 698 44.1
CARHR029630 Cardamine hirsuta HOM05D003594 ORTHO05D004268 1.9e-140 504.2 723 42.5
A08p24610 Brassica napus HOM05D003594 ORTHO05D004268 1.6e-139 501.1 565 48.8
Aa31sc91G80 Aethionema arabicum HOM05D003594 ORTHO05D004268 6.2e-139 499.2 615 46.3
Os05g0295900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 2.2e-136 490.7 857 40.0
PGR044G2128 Punica granatum HOM05D003594 ORTHO05D004268 2.7e-134 483.8 822 39.7
AUR62042073 Chenopodium quinoa HOM05D003594 ORTHO05D004268 3.9e-133 479.9 719 40.5
arahy.Tifrunner.gnm1.ann1.Q3AX4Y Arachis hypogaea HOM05D003594 ORTHO05D004268 1.3e-128 464.9 929 37.1
CDE09G0981 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 1.0e-125 455.3 852 38.7
BraA08t34416Z Brassica rapa HOM05D003594 ORTHO05D004268 9.6e-124 448.7 519 48.6
CsaV3_5G035440 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.2e-121 441.8 592 44.6
CsaV3_5G035480 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.2e-121 441.8 592 44.6
AUR62043305 Chenopodium quinoa HOM05D003594 ORTHO05D004268 2.9e-120 437.2 519 47.4
Phvul.003G001400 Phaseolus vulgaris HOM05D003594 ORTHO05D004268 6.1e-118 429.5 523 49.3
Zm00001eb231330 Zea mays HOM05D003594 ORTHO05D004268 5.9e-113 412.9 813 37.1
Atru.chr12.1013 Acer truncatum HOM05D003594 ORTHO05D004268 2.7e-110 404.1 664 40.2
Mapoly0108s0040 Marchantia polymorpha HOM05D003594 ORTHO05D004268 1.8e-109 401.4 588 41.5
MD09G1289100 Malus domestica HOM05D003594 ORTHO05D004268 2.3e-109 401.0 616 45.1
CsaV3_5G035460 Cucumis sativus L. HOM05D003594 ORTHO05D004268 3.3e-108 397.1 444 49.8
Hma1.2p1_0145F.1_g065330 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 4.1e-106 390.2 337 61.1
Hund23993 Selenicereus undatus HOM05D003594 ORTHO05D004268 5.3e-106 389.8 418 51.9
Gohir.D09G017550 Gossypium hirsutum HOM05D003594 ORTHO05D004268 2.2e-104 384.4 564 41.7
Hund22286 Selenicereus undatus HOM05D003594 ORTHO05D004268 3.8e-104 383.6 533 44.7
Gorai.006G020600 Gossypium raimondii HOM05D003594 ORTHO05D004268 6.5e-104 382.9 564 41.7
Pp3c8_9490 Physcomitrium patens HOM05D003594 ORTHO05D004268 8.8e-101 372.5 610 38.4
SMO364G0406 Selaginella moellendorffii HOM05D003594 ORTHO05D004268 3.5e-97 360.5 624 39.1
Pp3c15_8100 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.7e-92 343.2 594 37.7
Pp3c15_8103 Physcomitrium patens HOM05D003594 ORTHO05D004268 5.7e-92 343.2 594 37.7
Actinidia18596 Actinidia chinensis HOM05D003594 ORTHO05D004268 3.6e-86 323.9 401 47.9
Haze_02500 Corylus avellana HOM05D003594 ORTHO05D004268 7.7e-81 306.2 248 61.3
Cc02_g29830 Coffea canephora HOM05D003594 ORTHO05D004268 1.3e-80 305.4 174 88.5
CBR_g29875 Chara braunii HOM05D003594 ORTHO05D000497 2.5e-79 301.2 719 32.4
CBR_g45421 Chara braunii HOM05D003594 ORTHO05D004268 4.9e-75 287.0 720 32.2
MD09G1292100 Malus domestica HOM05D003594 ORTHO05D004268 2.1e-70 271.6 538 40.9
MSTRG.27536 Avicennia marina HOM05D003594 ORTHO05D004268 3.7e-67 260.8 297 48.5
Aqoxy2G02949 Aquilegia oxysepala HOM05D003594 ORTHO05D004268 8.3e-67 259.6 830 28.8
GSVIVG01011385001 Vitis vinifera HOM05D003594 ORTHO05D004268 1.1e-61 242.7 539 36.9
CsaV3_5G035510 Cucumis sativus L. HOM05D003594 ORTHO05D004268 2.0e-60 238.4 224 53.6
Gohir.A09G018100 Gossypium hirsutum HOM05D003594 ORTHO05D004268 6.4e-59 233.4 427 37.0
TWI63G1716 Tripterygium wilfordii HOM05D003594 ORTHO05D004268 1.1e-55 222.6 196 54.6
SEGI_27789 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.1e-49 201.8 197 55.3
Nn3g17196 Nelumbo nucifera HOM05D003594 ORTHO05D004268 1.3e-43 182.6 386 38.6
AagrBONN_evm.TU.Sc2ySwM_228.2673 Anthoceros agrestis HOM05D003594 ORTHO05D004268 1.7e-43 182.2 345 37.1
Psat6g218640 Pisum sativum HOM05D001312 ORTHO05D001832 1.1e-42 179.5 246 42.3
Os06g0343900 Oryza sativa ssp. japonica HOM05D003594 ORTHO05D004268 1.4e-42 179.1 244 42.6
Hund22291 Selenicereus undatus HOM05D003594 ORTHO05D004268 1.9e-42 178.7 225 46.7
Haze_02506 Corylus avellana HOM05D003594 ORTHO05D004268 5.4e-42 177.2 388 37.1
Atru.chr12.1014 Acer truncatum HOM05D003594 ORTHO05D004268 6.0e-41 173.7 142 58.5
ATR0564G271 Amborella trichopoda HOM05D003594 ORTHO05D004268 4.7e-38 164.1 428 34.1
SEGI_05252 Sequoiadendron giganteum HOM05D003594 ORTHO05D004268 2.1e-33 148.7 533 31.5
QL04p046254 Quercus lobata HOM05D003594 ORTHO05D004268 7.8e-33 146.7 232 41.4
BcaB08g34816 Brassica carinata HOM05D002573 ORTHO05D002918 9.6e-31 139.8 165 47.3
SHI24306 Sapria himalayana HOM05D003594 ORTHO05D004268 1.8e-29 135.6 235 38.3
MSTRG.26055 Avicennia marina HOM05D003594 ORTHO05D004268 9.3e-26 123.2 305 32.8
CsaV3_5G035520 Cucumis sativus L. HOM05D003594 ORTHO05D004268 1.8e-24 119.0 182 43.4
Actinidia36695 Actinidia chinensis HOM05D003594 ORTHO05D004268 4.0e-21 107.8 336 34.5
A02p30260 Brassica napus HOM05D003594 ORTHO05D004268 6.9e-21 107.1 86 57.0
A03p57890 Brassica napus HOM05D003594 ORTHO05D004268 6.9e-21 107.1 86 57.0
C02p37120 Brassica napus HOM05D003594 ORTHO05D004268 2.0e-20 105.5 90 54.4
BolC5t29265H Brassica oleracea HOM05D003594 ORTHO05D004268 4.5e-20 104.4 84 57.1
C03p15410 Brassica napus HOM05D003594 ORTHO05D004268 1.7e-19 102.4 87 56.3
BolC7t45516H Brassica oleracea HOM05D003594 ORTHO05D004268 2.9e-19 101.7 84 56.0
C03p91380 Brassica napus HOM05D003594 ORTHO05D004268 6.4e-19 100.5 84 56.0
BolC3t21454H Brassica oleracea HOM05D003594 ORTHO05D004268 6.4e-19 100.5 84 56.0
MCO15G512 Micromonas commoda HOM05D003594 ORTHO05D004268 6.4e-19 100.5 609 21.2
MSTRG.27538 Avicennia marina HOM05D003594 ORTHO05D004268 2.4e-18 98.6 62 71.0
Gohir.A09G018150 Gossypium hirsutum HOM05D003594 ORTHO05D004268 1.6e-17 95.9 85 57.6
SHI24307 Sapria himalayana HOM05D003594 ORTHO05D004268 4.6e-17 94.4 182 40.1
BraA03t14853Z Brassica rapa HOM05D003594 ORTHO05D004268 6.7e-16 90.5 74 58.1
C03p54150 Brassica napus HOM05D003594 ORTHO05D004268 1.5e-15 89.4 74 56.8
CsaV3_5G035420 Cucumis sativus L. HOM05D003594 ORTHO05D004268 4.3e-15 87.8 74 58.1
Hma1.2p1_0053F.1_g030920 Hydrangea macrophylla HOM05D003594 ORTHO05D004268 2.8e-14 85.1 75 60.0
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 9.0e-13 80.1 66 53.0
Psat6g091000 Pisum sativum HOM05D003335 ORTHO05D003853 1.5e-12 79.3 65 55.4
SHI24305 Sapria himalayana HOM05D000023 ORTHO05D000014 2.9e-11 75.1 56 60.7
MSTRG.18917 Avicennia marina HOM05D003594 ORTHO05D026973 3.2e-10 71.6 94 48.9
CDE02G4417 Ceratophyllum demersum HOM05D003594 ORTHO05D004268 6.0e-09 67.4 62 58.1
TPR.G23930 Trifolium pratense HOM05D003594 ORTHO05D004268 1.0e-08 66.6 295 29.2
Actinidia36694 Actinidia chinensis HOM05D003594 ORTHO05D004268 1.3e-08 66.2 60 53.3
MSTRG.11586 Avicennia marina HOM05D003594 ORTHO05D004268 1.3e-08 66.2 40 72.5
Prupe.6G159300 Prunus persica HOM05D003594 ORTHO05D004268 3.9e-08 64.7 138 39.1
MD09G1289200 Malus domestica HOM05D003594 ORTHO05D004268 5.1e-08 64.3 43 62.8
SHI24302 Sapria himalayana HOM05D003594 ORTHO05D004268 1.1e-07 63.2 53 58.5
Ciclev10030203m.g Citrus clementina HOM05D003594 ORTHO05D026973 7.4e-07 60.5 110 40.9
Psat0s3125g0040 Pisum sativum HOM05D003335 ORTHO05D003853 9.7e-07 60.1 44 59.1


User provided reference genes

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