Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 9.2e-124 446.8 213 100.0
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 2.4e-111 405.6 210 88.6
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 4.9e-109 397.9 208 89.4
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 6.4e-109 397.5 208 88.0
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 6.4e-109 397.5 211 85.3
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 6.4e-109 397.5 208 88.0
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 2.4e-108 395.6 209 87.6
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 3.2e-108 395.2 208 88.5
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 5.4e-108 394.4 210 86.2
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 9.3e-108 393.7 208 88.0
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 9.3e-108 393.7 212 84.9
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 4.6e-107 391.3 213 84.5
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 4.6e-107 391.3 209 86.1
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.0e-107 391.0 198 91.4
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 7.8e-107 390.6 208 87.0
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 1.3e-106 389.8 210 87.1
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.3e-106 389.8 208 87.0
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 2.3e-106 389.0 206 86.9
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 3.0e-106 388.7 210 87.1
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 3.0e-106 388.7 208 88.0
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 3.9e-106 388.3 210 85.7
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 3.9e-106 388.3 210 85.7
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 5.1e-106 387.9 213 83.1
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 5.1e-106 387.9 208 86.5
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 5.1e-106 387.9 208 85.6
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 6.6e-106 387.5 211 82.5
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 1.1e-105 386.7 203 87.2
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 1.5e-105 386.3 209 84.2
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 2.5e-105 385.6 208 85.1
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 5.6e-105 384.4 211 81.5
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 5.6e-105 384.4 208 86.1
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 7.3e-105 384.0 208 85.6
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 7.3e-105 384.0 208 85.1
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 7.3e-105 384.0 209 84.2
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 9.6e-105 383.6 208 86.1
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 9.6e-105 383.6 210 85.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 9.6e-105 383.6 209 84.7
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.3e-104 383.3 208 85.1
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.3e-104 383.3 208 85.1
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.3e-104 383.3 208 85.1
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 1.3e-104 383.3 208 83.7
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.6e-104 382.9 213 81.7
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.6e-104 382.9 209 84.7
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 3.6e-104 381.7 210 82.9
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 1.4e-103 379.8 210 83.8
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 1.8e-103 379.4 209 84.7
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 2.4e-103 379.0 208 82.7
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 4.0e-103 378.3 210 81.9
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 9.0e-103 377.1 210 82.9
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 9.0e-103 377.1 213 81.7
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 2.0e-102 375.9 209 83.7
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 2.0e-102 375.9 208 84.6
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 2.6e-102 375.6 213 81.7
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 2.6e-102 375.6 213 82.2
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 7.6e-102 374.0 210 84.3
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 7.6e-102 374.0 209 80.4
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 7.6e-102 374.0 209 81.8
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 9.9e-102 373.6 208 83.2
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 1.3e-101 373.2 209 82.8
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.7e-101 372.9 209 81.8
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.2e-101 372.5 211 78.7
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 2.9e-101 372.1 193 88.6
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.9e-101 372.1 210 83.8
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 3.8e-101 371.7 208 83.2
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.9e-101 371.3 210 83.8
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 4.9e-101 371.3 217 82.5
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.9e-101 371.3 208 81.7
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 6.4e-101 370.9 209 81.3
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 1.1e-100 370.2 231 77.5
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 4.2e-100 368.2 207 80.7
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 4.2e-100 368.2 208 80.8
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 1.2e-99 366.7 206 80.6
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 1.2e-99 366.7 208 80.3
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 1.6e-99 366.3 212 78.3
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 1.6e-99 366.3 208 81.2
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 1.6e-99 366.3 201 83.6
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 2.1e-99 365.9 209 79.4
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 3.5e-99 365.2 210 80.0
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 3.5e-99 365.2 208 80.8
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 6.0e-99 364.4 211 79.6
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 7.9e-99 364.0 201 82.6
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 7.9e-99 364.0 209 78.5
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.0e-98 363.6 204 80.9
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 1.3e-98 363.2 206 79.1
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 2.3e-98 362.5 213 77.9
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 3.0e-98 362.1 206 79.1
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 3.9e-98 361.7 204 80.4
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 3.9e-98 361.7 210 80.0
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 3.9e-98 361.7 211 79.1
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 5.1e-98 361.3 206 78.6
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 5.1e-98 361.3 210 80.0
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 8.7e-98 360.5 204 80.4
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 1.1e-97 360.1 204 80.4
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.1e-97 360.1 200 82.0
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.5e-97 359.8 210 79.5
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 2.5e-97 359.0 210 78.1
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 4.3e-97 358.2 211 75.8
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 5.6e-97 357.8 211 75.8
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 5.6e-97 357.8 206 77.7
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 1.3e-96 356.7 209 77.0
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 1.6e-96 356.3 233 72.1
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 1.4e-95 353.2 209 78.5
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 1.4e-95 353.2 204 78.9
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 2.4e-95 352.4 209 78.0
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 6.9e-95 350.9 250 70.8
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 1.5e-94 349.7 294 60.9
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.5e-94 349.7 206 76.2
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.4e-92 342.4 208 74.0
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 1.2e-91 340.1 204 75.0
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.0e-90 337.0 207 74.4
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 3.0e-90 335.5 205 73.2
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 1.5e-89 333.2 206 72.8
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 5.6e-89 331.3 211 73.9
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 5.6e-89 331.3 201 73.6
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 5.6e-89 331.3 166 90.4
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 1.3e-88 330.1 207 72.9
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 2.4e-87 325.9 173 89.0
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 2.9e-85 318.9 174 85.6
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.4e-84 316.6 201 73.6
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 7.2e-76 287.7 424 42.5
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 4.8e-72 275.0 208 65.9
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 5.9e-70 268.1 145 83.4
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 2.2e-69 266.2 145 82.1
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 5.0e-69 265.0 178 71.9
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 1.4e-66 256.9 145 77.2
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 1.7e-56 223.4 113 88.5
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 6.3e-56 221.5 140 72.1
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 2.4e-47 193.0 203 47.3
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 9.1e-47 191.0 196 50.5
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 9.1e-47 191.0 109 82.6
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 2.7e-46 189.5 125 71.2
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 2.6e-41 172.9 195 44.6
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 1.7e-40 170.2 96 84.4
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 2.2e-40 169.9 88 85.2
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 1.0e-37 161.0 145 56.6
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 3.2e-36 156.0 74 93.2
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 1.2e-35 154.1 95 76.8
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 1.2e-33 147.5 89 78.7
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 1.8e-26 123.6 69 84.1
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 9.2e-23 111.3 74 73.0
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 4.3e-20 102.4 59 81.4
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 2.8e-19 99.8 63 76.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 2.3e-18 96.7 58 79.3
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 8.1e-11 71.6 40 85.0
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 8.1e-11 71.6 60 68.3
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 1.8e-10 70.5 35 88.6
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 1.2e-09 67.8 35 80.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 9.8e-09 64.7 32 90.6


User provided reference genes

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