Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 7.4e-100 367.5 223 100.0
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 7.7e-73 277.7 170 80.0
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 1.9e-71 273.1 170 79.4
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 2.5e-71 272.7 200 71.0
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 3.3e-71 272.3 194 72.2
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 1.2e-70 270.4 170 77.6
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 4.7e-70 268.5 224 74.1
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 4.7e-70 268.5 167 78.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.8e-69 266.5 171 78.9
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 1.8e-69 266.5 171 76.6
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 4.0e-69 265.4 170 77.6
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 4.0e-69 265.4 168 78.6
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 5.2e-69 265.0 174 74.7
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 5.2e-69 265.0 174 74.7
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 8.9e-69 264.2 172 77.9
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 8.9e-69 264.2 171 75.4
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 8.9e-69 264.2 171 75.4
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 8.9e-69 264.2 175 75.4
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 1.5e-68 263.5 167 77.2
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.5e-68 263.5 172 76.7
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.0e-68 263.1 171 76.0
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.0e-68 263.1 208 71.2
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.6e-68 262.7 171 77.2
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 2.6e-68 262.7 167 80.8
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 3.4e-68 262.3 174 74.7
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 3.4e-68 262.3 175 74.3
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 7.5e-68 261.2 172 77.3
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 7.5e-68 261.2 170 77.6
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.7e-67 260.0 166 77.1
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 1.7e-67 260.0 171 77.2
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 2.2e-67 259.6 173 75.1
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 8.3e-67 257.7 170 75.9
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 1.1e-66 257.3 173 76.9
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.4e-66 256.9 201 76.6
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 2.4e-66 256.1 193 68.9
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 4.1e-66 255.4 201 75.1
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 4.1e-66 255.4 201 75.1
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 7.0e-66 254.6 173 77.5
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 7.0e-66 254.6 174 72.4
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 9.2e-66 254.2 171 74.9
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.2e-65 253.8 176 73.9
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 1.2e-65 253.8 195 75.4
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 1.2e-65 253.8 177 71.8
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 2.0e-65 253.1 143 88.8
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 2.7e-65 252.7 170 74.7
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.7e-65 252.7 143 83.9
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 3.5e-65 252.3 143 84.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 3.5e-65 252.3 169 75.1
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 5.9e-65 251.5 170 72.4
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 5.9e-65 251.5 147 85.7
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 5.9e-65 251.5 170 73.5
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 1.3e-64 250.4 170 73.5
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 2.3e-64 249.6 179 72.1
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 2.3e-64 249.6 173 71.7
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 3.0e-64 249.2 167 74.3
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 6.6e-64 248.1 174 73.0
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.6e-64 248.1 143 83.2
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.6e-64 248.1 143 83.2
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 4.3e-63 245.4 147 79.6
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 5.6e-63 245.0 151 80.1
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 1.6e-62 243.4 156 78.8
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 1.6e-62 243.4 172 71.5
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 2.1e-62 243.0 161 77.6
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 3.6e-62 242.3 171 70.8
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 8.0e-62 241.1 143 83.2
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.8e-61 240.0 165 70.9
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.8e-61 240.0 134 87.3
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 3.1e-61 239.2 170 68.2
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 3.1e-61 239.2 143 78.3
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 3.1e-61 239.2 143 79.0
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 5.2e-61 238.4 173 72.3
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 2.0e-60 236.5 143 77.6
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 3.4e-60 235.7 159 73.6
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 7.5e-60 234.6 170 66.5
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 9.8e-60 234.2 144 81.2
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 1.3e-59 233.8 143 75.5
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 1.3e-59 233.8 143 75.5
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 1.3e-59 233.8 143 75.5
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 1.3e-59 233.8 143 75.5
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 2.2e-59 233.0 132 87.1
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 2.2e-59 233.0 152 77.0
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.9e-58 229.9 130 85.4
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 9.2e-58 227.6 134 80.6
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 9.2e-58 227.6 155 72.9
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.6e-57 226.9 176 65.9
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 2.7e-57 226.1 236 53.8
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 1.7e-56 223.4 154 72.1
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 7.3e-55 218.0 179 65.9
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 1.4e-53 213.8 171 62.6
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 2.1e-46 189.9 152 64.5
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 4.7e-46 188.7 168 60.7
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 1.8e-45 186.8 172 58.7
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 3.4e-44 182.6 176 58.5
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 9.9e-44 181.0 163 56.4
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 7.8e-41 171.4 157 73.2
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 1.0e-40 171.0 132 68.9
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 5.1e-40 168.7 91 85.7
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 1.1e-37 161.0 129 64.3
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 6.9e-37 158.3 171 53.2
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 4.2e-34 149.1 149 54.4
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 1.5e-31 140.6 110 70.0
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 1.5e-31 140.6 110 70.0
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 1.6e-30 137.1 131 57.3
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 1.7e-27 127.1 147 49.0
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 8.1e-22 108.2 64 84.4
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 3.1e-21 106.3 65 86.2
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.5e-20 104.0 101 59.4
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 3.2e-18 96.3 58 79.3
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 3.9e-16 89.4 108 41.7
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 1.8e-13 80.5 65 63.1
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 4.2e-10 69.3 88 52.3
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 9.3e-10 68.2 31 87.1
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 9.3e-10 68.2 37 89.2
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 7.9e-09 65.1 31 83.9
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 4.3e-07 59.3 58 53.4
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 2.1e-06 57.0 25 88.0


User provided reference genes

Program Settings