Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.2e-29 132.9 90 100.0
Nitab4.5_0002586g0040 Nicotiana tabacum HOM05D007506 ORTHO05D008409 4.6e-16 87.8 90 61.1
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 1.5e-14 82.8 63 74.6
VMungo0720G0153 Vigna mungo HOM05D007506 ORTHO05D008409 1.1e-12 76.6 64 68.8
CAN.G1373.1 Capsicum annuum HOM05D007506 ORTHO05D008409 1.8e-12 75.9 58 69.0
Solyc11g006750.1 Solanum lycopersicum HOM05D007506 ORTHO05D008409 1.8e-12 75.9 58 74.1
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 2.4e-12 75.5 63 71.4
PGSC0003DMG400023979 Solanum tuberosum HOM05D007506 ORTHO05D008409 3.1e-12 75.1 58 74.1
Phvul.007G023500 Phaseolus vulgaris HOM05D007506 ORTHO05D008409 4.0e-12 74.7 64 67.2
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 6.9e-12 73.9 63 68.3
Nitab4.5_0010633g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 9.0e-12 73.6 92 69.6
Sopen11g002680 Solanum pennellii HOM05D007506 ORTHO05D008409 9.0e-12 73.6 58 72.4
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.2e-11 73.2 58 67.2
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.2e-11 73.2 58 67.2
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 1.2e-11 73.2 58 67.2
Nitab4.5_0005214g0030 Nicotiana tabacum HOM05D007506 ORTHO05D008409 1.5e-11 72.8 92 69.6
Peaxi162Scf00519g00621 Petunia axillaris HOM05D007506 ORTHO05D008409 1.5e-11 72.8 90 71.1
Glyma.20G110900 Glycine max HOM05D007506 ORTHO05D008409 3.4e-11 71.6 64 67.2
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 4.4e-11 71.2 63 66.7
Peaxi162Scf00125g00216 Petunia axillaris HOM05D007506 ORTHO05D008409 4.4e-11 71.2 59 67.8
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 7.6e-11 70.5 90 63.3
Dinv02210 Davidia involucrata HOM05D007506 ORTHO05D008409 9.9e-11 70.1 56 69.6
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 1.7e-10 69.3 63 63.5
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 2.2e-10 68.9 57 68.4
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 2.2e-10 68.9 64 65.6
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 2.9e-10 68.6 64 64.1
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 2.9e-10 68.6 63 66.7
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.9e-10 68.6 69 63.8
Lalb_Chr06g0166331 Lupinus albus HOM05D007506 ORTHO05D008409 3.8e-10 68.2 64 64.1
Oeu027974.1 Olea europaea HOM05D007506 ORTHO05D008409 4.9e-10 67.8 59 72.9
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 6.4e-10 67.4 64 60.9
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 6.4e-10 67.4 63 60.3
CAN.G1417.6 Capsicum annuum HOM05D007506 ORTHO05D008409 1.1e-09 66.6 66 62.1
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 1.1e-09 66.6 61 60.7
TPR.G2499 Trifolium pratense HOM05D007506 ORTHO05D008409 1.1e-09 66.6 59 62.7
arahy.Tifrunner.gnm1.ann1.DEP6R1 Arachis hypogaea HOM05D007506 ORTHO05D008409 1.4e-09 66.2 61 65.6
arahy.Tifrunner.gnm1.ann1.MBF964 Arachis hypogaea HOM05D007506 ORTHO05D008409 1.4e-09 66.2 61 65.6
Oeu024806.1 Olea europaea HOM05D007506 ORTHO05D008409 1.9e-09 65.9 62 62.9
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 1.9e-09 65.9 75 76.0
Nitab4.5_0015562g0010 Nicotiana tabacum HOM05D007506 ORTHO05D008409 2.4e-09 65.5 53 69.8
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 2.4e-09 65.5 58 70.7
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 4.2e-09 64.7 91 52.7
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 5.4e-09 64.3 63 60.3
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 7.1e-09 63.9 67 61.2
Dinv02209 Davidia involucrata HOM05D007506 ORTHO05D008409 9.3e-09 63.5 51 68.6
Dinv07589 Davidia involucrata HOM05D007506 ORTHO05D008409 9.3e-09 63.5 51 68.6
PGSC0003DMG400023393 Solanum tuberosum HOM05D007506 ORTHO05D008409 9.3e-09 63.5 60 63.3
Psat6g238400 Pisum sativum HOM05D007506 ORTHO05D008409 1.2e-08 63.2 60 60.0
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 1.6e-08 62.8 60 58.3
AUR62042085 Chenopodium quinoa HOM05D007506 ORTHO05D008409 1.6e-08 62.8 66 63.6
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 1.6e-08 62.8 58 62.1
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 1.6e-08 62.8 63 58.7
Sc20g0001140 Simmondsia chinensis HOM05D007506 ORTHO05D008409 1.6e-08 62.8 64 62.5
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 2.1e-08 62.4 61 60.7
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 2.7e-08 62.0 67 58.2
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 2.7e-08 62.0 55 65.5
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 3.5e-08 61.6 58 62.1
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 3.5e-08 61.6 50 68.0
SalBow6G2037 Salvia bowleyana HOM05D007506 ORTHO05D008409 4.6e-08 61.2 57 64.9
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 6.0e-08 60.8 65 61.5
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 7.8e-08 60.5 64 56.2
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 7.8e-08 60.5 58 62.1
EL10Ac4g08692 Beta vulgaris HOM05D007506 ORTHO05D008409 1.3e-07 59.7 67 61.2
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 1.3e-07 59.7 58 60.3
Aqoxy7G00782 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 1.7e-07 59.3 63 61.9
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 1.7e-07 59.3 57 63.2
SGA_v2.0_scaffold62G21316 Striga asiatica HOM05D007506 ORTHO05D008409 1.7e-07 59.3 45 73.3
Os08g0558900 Oryza sativa ssp. japonica HOM05D007506 ORTHO05D008409 2.3e-07 58.9 60 56.7
Solyc05g055250.2 Solanum lycopersicum HOM05D007506 ORTHO05D008409 2.3e-07 58.9 60 58.3
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 3.0e-07 58.5 56 58.9
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 3.0e-07 58.5 90 52.2
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 3.0e-07 58.5 63 55.6
arahy.Tifrunner.gnm1.ann1.KXIJ9T Arachis hypogaea HOM05D007506 ORTHO05D008409 5.1e-07 57.8 42 71.4
Nn6g34869 Nelumbo nucifera HOM05D007506 ORTHO05D008409 6.6e-07 57.4 58 63.8
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 8.7e-07 57.0 63 54.0
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 8.7e-07 57.0 63 54.0
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 8.7e-07 57.0 63 54.0
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 8.7e-07 57.0 63 54.0
TAR636G0277 Trochodendron aralioides HOM05D007506 ORTHO05D008409 8.7e-07 57.0 90 63.3
A03p01810 Brassica napus HOM05D012863 ORTHO05D008409 1.1e-06 56.6 62 51.6
C03p02190 Brassica napus HOM05D012863 ORTHO05D008409 1.1e-06 56.6 62 51.6
BolC3t12770H Brassica oleracea HOM05D012863 ORTHO05D008409 1.1e-06 56.6 62 51.6
BraA03t09553Z Brassica rapa HOM05D012863 ORTHO05D008409 1.1e-06 56.6 62 51.6
PSO339G4482 Papaver somniferum HOM05D007506 ORTHO05D008409 1.1e-06 56.6 63 54.0
HPP92_013812 Vanilla planifolia HOM05D007506 ORTHO05D008409 1.5e-06 56.2 57 50.9
unitig_899.g14468 Utricularia gibba HOM05D007506 ORTHO05D008409 1.9e-06 55.8 36 80.6
arahy.Tifrunner.gnm1.ann1.X5G790 Arachis hypogaea HOM05D007506 ORTHO05D008409 2.5e-06 55.5 40 72.5
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 2.5e-06 55.5 59 57.6
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 2.5e-06 55.5 53 62.3
vmacro10310 Vaccinium macrocarpon HOM05D007506 ORTHO05D008409 2.5e-06 55.5 57 61.4
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 3.3e-06 55.1 59 57.6
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 3.3e-06 55.1 65 52.3
Sopen05g033690 Solanum pennellii HOM05D007506 ORTHO05D008409 3.3e-06 55.1 58 56.9
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 4.3e-06 54.7 65 58.5
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 4.3e-06 54.7 38 73.7
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 4.3e-06 54.7 57 59.6
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 4.3e-06 54.7 57 57.9
AUR62034189 Chenopodium quinoa HOM05D007506 ORTHO05D008409 7.3e-06 53.9 55 65.5
Lsat_1_v5_gn_8_24340 Lactuca sativa HOM05D021830 ORTHO05D025293 9.6e-06 53.5 58 63.8


User provided reference genes

Program Settings