Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09470 Coffea canephora HOM05D007308 ORTHO05D009157 1.4e-130 469.5 230 100.0
Dinv08592 Davidia involucrata HOM05D007308 ORTHO05D009157 5.3e-77 291.6 190 73.7
Rhsim09G0141500 Rhododendron simsii HOM05D007308 ORTHO05D009157 5.9e-76 288.1 190 70.0
Hma1.2p1_0457F.1_g156910 Hydrangea macrophylla HOM05D007308 ORTHO05D009157 1.5e-74 283.5 190 70.0
MSTRG.27555 Avicennia marina HOM05D007308 ORTHO05D009157 2.3e-72 276.2 190 69.5
CSS0004692 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 2.0e-71 273.1 181 71.8
vmacro10315 Vaccinium macrocarpon HOM05D007308 ORTHO05D009157 4.4e-71 271.9 189 67.7
Migut.F00856 Erythranthe guttata HOM05D007308 ORTHO05D009157 4.8e-70 268.5 190 67.9
QL04p047115 Quercus lobata HOM05D007308 ORTHO05D009157 8.3e-70 267.7 229 58.5
TAR623G1715 Trochodendron aralioides HOM05D007308 ORTHO05D009157 7.7e-68 261.2 191 65.4
GSVIVG01034647001 Vitis vinifera HOM05D007308 ORTHO05D009157 2.3e-67 259.6 201 63.7
ECA232G3668 Erigeron canadensis HOM05D007308 ORTHO05D009157 8.6e-67 257.7 205 60.5
Nitab4.5_0001047g0020 Nicotiana tabacum HOM05D007308 ORTHO05D009157 8.6e-67 257.7 179 70.9
Nn2g14273 Nelumbo nucifera HOM05D007308 ORTHO05D009157 1.5e-66 256.9 179 67.0
Prupe.2G071800 Prunus persica HOM05D007308 ORTHO05D009157 1.9e-66 256.5 190 63.2
CiPaw.13G043100 Carya illinoinensis HOM05D007308 ORTHO05D009157 3.3e-66 255.8 176 67.6
TWI15G0952 Tripterygium wilfordii HOM05D007308 ORTHO05D009157 4.2e-66 255.4 180 63.9
Lsat_1_v5_gn_3_53161 Lactuca sativa HOM05D007308 ORTHO05D009157 9.5e-66 254.2 194 62.4
CANSAT56G1109 Cannabis sativa HOM05D007308 ORTHO05D009157 2.1e-65 253.1 175 66.9
THA.LOC104816471 Tarenaya hassleriana HOM05D007308 ORTHO05D009157 3.6e-65 252.3 196 61.7
HanXRQChr05g0147281 Helianthus annuus HOM05D007308 ORTHO05D009157 4.7e-65 251.9 209 58.9
Peaxi162Scf00725g00524 Petunia axillaris HOM05D007308 ORTHO05D009157 6.1e-65 251.5 179 70.4
PGSC0003DMG400001980 Solanum tuberosum HOM05D007308 ORTHO05D009157 1.8e-64 250.0 177 70.6
Lalb_Chr02g0150981 Lupinus albus HOM05D007308 ORTHO05D009157 2.3e-64 249.6 171 69.6
MBI17_g22148_MAGBIO Magnolia biondii HOM05D007308 ORTHO05D009157 2.3e-64 249.6 187 65.8
Aqoxy1G00692 Aquilegia oxysepala HOM05D007308 ORTHO05D009157 3.0e-64 249.2 173 67.1
Medtr1g090630 Medicago truncatula HOM05D007308 ORTHO05D009157 3.0e-64 249.2 175 66.3
Eucgr.J00279 Eucalyptus grandis HOM05D007308 ORTHO05D009157 5.2e-64 248.4 182 64.3
SalBow3G3836 Salvia bowleyana HOM05D007308 ORTHO05D009157 6.8e-64 248.1 190 63.7
Lj5g0023307 Lotus japonicus HOM05D007308 ORTHO05D009157 1.5e-63 246.9 167 70.1
Lj3C924T9 Lonicera japonica HOM05D007308 ORTHO05D009157 4.4e-63 245.4 222 56.8
Glyma.20G194000 Glycine max HOM05D007308 ORTHO05D009157 5.7e-63 245.0 167 67.7
Sabra10G0189200 Salix brachista HOM05D000139 ORTHO05D000103 9.8e-63 244.2 178 63.5
Ciclev10016517m.g Citrus clementina HOM05D007308 ORTHO05D009157 1.3e-62 243.8 189 63.0
Potri.010G241700 Populus trichocarpa HOM05D007308 ORTHO05D009157 1.7e-62 243.4 176 62.5
arahy.Tifrunner.gnm1.ann1.ZU0NEU Arachis hypogaea HOM05D007308 ORTHO05D009157 1.1e-61 240.7 163 68.7
Glyma.10G196200 Glycine max HOM05D007308 ORTHO05D009157 1.1e-61 240.7 154 71.4
arahy.Tifrunner.gnm1.ann1.I1QH9V Arachis hypogaea HOM05D007308 ORTHO05D009157 1.4e-61 240.4 162 69.1
Sed0002245 Sechium edule HOM05D007308 ORTHO05D009157 2.4e-61 239.6 177 61.6
CDE02G0914 Ceratophyllum demersum HOM05D007308 ORTHO05D009157 3.1e-61 239.2 177 62.1
CsaV3_5G035250 Cucumis sativus L. HOM05D007308 ORTHO05D009157 4.1e-61 238.8 179 62.6
Lalb_Chr21g0312841 Lupinus albus HOM05D007308 ORTHO05D009157 5.4e-61 238.4 172 65.7
PSO339G2601 Papaver somniferum HOM05D007308 ORTHO05D009157 5.4e-61 238.4 159 68.6
Gohir.D13G010000 Gossypium hirsutum HOM05D007308 ORTHO05D009157 7.0e-61 238.0 168 67.3
Gorai.013G010700 Gossypium raimondii HOM05D007308 ORTHO05D009157 7.0e-61 238.0 168 67.3
Gohir.A13G009300 Gossypium hirsutum HOM05D007308 ORTHO05D009157 1.6e-60 236.9 168 67.3
AL6G14490 Arabidopsis lyrata HOM05D007308 ORTHO05D009157 2.0e-60 236.5 176 64.2
VMungo0720G2616 Vigna mungo HOM05D007308 ORTHO05D009157 2.0e-60 236.5 172 64.5
PSO384G3587 Papaver somniferum HOM05D007308 ORTHO05D009157 3.5e-60 235.7 176 63.1
AT5G04830 Arabidopsis thaliana HOM05D007308 ORTHO05D009157 4.5e-60 235.3 176 63.1
BcaB01g05916 Brassica carinata HOM05D007308 ORTHO05D009157 4.5e-60 235.3 176 63.1
C03p02230 Brassica napus HOM05D007308 ORTHO05D009157 4.5e-60 235.3 176 63.1
BolC3t12774H Brassica oleracea HOM05D007308 ORTHO05D009157 4.5e-60 235.3 176 63.1
SGA_v2.0_scaffold272G46352 Striga asiatica HOM05D007308 ORTHO05D009157 4.5e-60 235.3 254 50.4
Thecc.10G116800 Theobroma cacao HOM05D007308 ORTHO05D009157 4.5e-60 235.3 223 57.0
ClCG05G021890 Citrullus lanatus HOM05D007308 ORTHO05D009157 1.0e-59 234.2 176 61.9
MD07G1062000 Malus domestica HOM05D007308 ORTHO05D009157 1.3e-59 233.8 155 68.4
Duzib106G1839 Durio zibethinus HOM05D007308 ORTHO05D009157 2.3e-59 233.0 224 55.4
PGR044G1814 Punica granatum HOM05D007308 ORTHO05D009157 2.3e-59 233.0 199 56.8
BcaC06g32190 Brassica carinata HOM05D007308 ORTHO05D009157 2.9e-59 232.6 185 62.7
A03p01870 Brassica napus HOM05D007308 ORTHO05D009157 3.9e-59 232.3 178 61.8
BraA03t09557Z Brassica rapa HOM05D007308 ORTHO05D009157 3.9e-59 232.3 178 61.8
Haze_03470 Corylus avellana HOM05D007308 ORTHO05D009157 3.9e-59 232.3 204 57.8
Sc20g0001110 Simmondsia chinensis HOM05D007308 ORTHO05D009157 3.9e-59 232.3 177 63.3
Sed0004755 Sechium edule HOM05D007308 ORTHO05D009157 5.0e-59 231.9 169 61.5
PGR044G1810 Punica granatum HOM05D007308 ORTHO05D009157 6.6e-59 231.5 192 58.3
unitig_32.g11899 Utricularia gibba HOM05D007308 ORTHO05D009157 6.6e-59 231.5 176 63.6
C09p72050 Brassica napus HOM05D007308 ORTHO05D009157 8.6e-59 231.1 185 62.7
Phvul.007G138800 Phaseolus vulgaris HOM05D007308 ORTHO05D009157 8.6e-59 231.1 172 62.8
Sabra08G0011300 Salix brachista HOM05D007308 ORTHO05D009157 1.5e-58 230.3 167 64.1
Carub.0006s0371 Capsella rubella HOM05D007308 ORTHO05D009157 1.9e-58 229.9 168 64.9
A10p31380 Brassica napus HOM05D007308 ORTHO05D009157 4.3e-58 228.8 168 65.5
CSS0017788 Camellia sinensis var. sinensis HOM05D007308 ORTHO05D009157 5.6e-58 228.4 181 62.4
Aa31LG11G5650 Aethionema arabicum HOM05D007308 ORTHO05D009157 7.3e-58 228.0 178 62.9
CARHR208450 Cardamine hirsuta HOM05D007308 ORTHO05D009157 9.5e-58 227.6 176 62.5
Sp6g38000 Schrenkiella parvula HOM05D007308 ORTHO05D009157 9.5e-58 227.6 180 61.7
HPP92_005473 Vanilla planifolia HOM05D007308 ORTHO05D009157 2.8e-57 226.1 156 66.7
BolC9t59950H Brassica oleracea HOM05D007308 ORTHO05D009157 4.7e-57 225.3 193 60.1
ATR0772G202 Amborella trichopoda HOM05D007308 ORTHO05D009157 8.0e-57 224.6 200 57.0
Hund06794 Selenicereus undatus HOM05D007308 ORTHO05D009157 8.0e-57 224.6 181 61.9
Zm00001eb362380 Zea mays HOM05D007308 ORTHO05D009157 1.8e-56 223.4 154 64.9
Thhalv10014751m.g Eutrema salsugineum HOM05D007308 ORTHO05D009157 2.3e-56 223.0 193 58.0
BraA10t45184Z Brassica rapa HOM05D007308 ORTHO05D009157 6.8e-56 221.5 176 62.5
Os01g0965900 Oryza sativa ssp. japonica HOM05D007308 ORTHO05D009157 2.9e-54 216.1 151 66.2
Solyc11g006505.1 Solanum lycopersicum HOM05D007308 ORTHO05D009157 2.7e-52 209.5 158 65.2
Sopen11g002410 Solanum pennellii HOM05D007308 ORTHO05D009157 6.0e-52 208.4 138 72.5
Actinidia34730 Actinidia chinensis HOM05D000139 ORTHO05D000103 9.5e-50 201.1 132 73.5
Pp3c19_15880 Physcomitrium patens HOM05D007308 ORTHO05D009157 4.7e-49 198.7 162 58.6
Mapoly0021s0141 Marchantia polymorpha HOM05D007308 ORTHO05D009157 8.0e-49 198.0 193 51.3
SEGI_14438 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 1.2e-47 194.1 150 61.3
AagrBONN_evm.TU.Sc2ySwM_344.2550 Anthoceros agrestis HOM05D007308 ORTHO05D009157 3.4e-47 192.6 151 58.9
Pp3c14_20980 Physcomitrium patens HOM05D007308 ORTHO05D009157 3.4e-47 192.6 152 60.5
SMO143G0271 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 7.5e-47 191.4 153 60.8
MELO3C012339.2 Cucumis melo HOM05D007308 ORTHO05D009157 6.4e-46 188.3 141 64.5
RcHm_v2.0_Chr1g0331851 Rosa chinensis HOM05D007308 ORTHO05D009157 1.4e-45 187.2 142 62.7
CiPaw.14G034600 Carya illinoinensis HOM05D007308 ORTHO05D009157 1.9e-45 186.8 210 47.1
SMO265G0003 Selaginella moellendorffii HOM05D007308 ORTHO05D009157 2.1e-41 173.3 153 57.5
Manes.10G060700 Manihot esculenta HOM05D007308 ORTHO05D009157 4.7e-41 172.2 120 65.8
SEGI_29808 Sequoiadendron giganteum HOM05D007308 ORTHO05D009157 4.1e-37 159.1 122 60.7
Pp3c1_28520 Physcomitrium patens HOM05D007308 ORTHO05D009157 2.3e-35 153.3 119 60.5
BcaNung05151 Brassica carinata HOM05D007308 ORTHO05D009157 2.7e-28 129.8 190 42.1
Atru.BG.262.p Acer truncatum HOM05D007308 ORTHO05D009157 1.5e-26 124.0 80 72.5
Potri.008G017701 Populus trichocarpa HOM05D007308 ORTHO05D009157 8.1e-25 118.2 83 66.3
CBR_g30213 Chara braunii HOM05D007308 ORTHO05D009157 1.0e-19 101.3 147 36.7
Pp3c2_31450 Physcomitrium patens HOM05D007308 ORTHO05D009157 1.5e-18 97.4 85 54.1
Actinidia27055 Actinidia chinensis HOM05D007308 ORTHO05D009157 7.6e-15 85.1 90 57.8
PGSC0003DMG400007605 Solanum tuberosum HOM05D000011 ORTHO05D000018 2.5e-10 70.1 45 66.7
Sopen11g002430 Solanum pennellii HOM05D000011 ORTHO05D000018 5.3e-08 62.4 55 50.9
PGSC0003DMG402001979 Solanum tuberosum HOM05D000011 ORTHO05D000018 1.5e-07 60.8 41 63.4


User provided reference genes

Program Settings