Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 2.9e-301 1037.7 505 100.0
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 4.0e-202 708.4 503 68.0
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.9e-200 702.2 504 69.0
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 3.8e-200 701.8 496 70.0
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.9e-200 701.4 504 68.8
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 1.1e-199 700.3 480 70.4
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.4e-199 699.9 477 71.1
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.4e-199 699.9 502 67.5
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.9e-199 699.5 493 68.6
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 3.2e-199 698.7 508 66.5
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.2e-199 698.4 504 68.8
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.4e-199 698.0 504 68.7
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 5.4e-199 698.0 504 68.7
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.2e-198 696.8 504 68.7
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.7e-198 695.7 504 68.5
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-198 695.3 504 68.5
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 3.5e-198 695.3 504 68.3
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-198 694.9 504 68.5
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 4.6e-198 694.9 485 68.7
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.3e-197 693.3 504 68.3
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 3.9e-197 691.8 482 69.9
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.9e-196 689.5 504 68.1
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.3e-196 688.3 504 68.1
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 7.4e-196 687.6 473 69.3
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 1.3e-195 686.8 417 76.3
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.3e-195 686.8 507 66.7
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 1.6e-195 686.4 500 66.4
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 3.1e-194 682.2 508 65.9
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 2.0e-193 679.5 497 66.6
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 2.0e-193 679.5 500 65.2
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 4.9e-192 674.9 422 73.7
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 2.4e-191 672.5 476 66.8
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 8.7e-189 664.1 502 63.9
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 8.7e-189 664.1 497 64.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 5.6e-188 661.4 486 66.3
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 9.6e-188 660.6 502 65.7
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 2.4e-186 656.0 506 63.8
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 1.2e-185 653.7 502 64.3
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 1.2e-185 653.7 405 75.6
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 3.4e-185 652.1 397 76.3
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 7.6e-185 651.0 403 75.2
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 1.0e-184 650.6 478 63.4
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 1.7e-184 649.8 484 63.4
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 2.9e-184 649.0 407 74.4
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 1.4e-183 646.7 486 64.8
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 1.9e-183 646.4 403 74.7
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 4.2e-183 645.2 403 74.9
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.2e-182 643.7 404 74.8
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 1.6e-182 643.3 396 76.0
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 2.7e-182 642.5 483 64.8
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 4.6e-182 641.7 480 65.6
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 1.3e-181 640.2 477 64.4
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 8.7e-181 637.5 405 73.8
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 3.3e-180 635.6 405 72.6
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 9.6e-180 634.0 486 63.8
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.8e-179 632.5 405 73.6
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 4.8e-179 631.7 478 62.1
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.1e-178 630.6 493 61.3
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.4e-178 630.2 476 64.5
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 2.4e-178 629.4 486 63.4
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 3.1e-178 629.0 482 64.1
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 4.1e-178 628.6 482 63.5
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 4.1e-178 628.6 499 62.5
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 5.3e-178 628.2 405 73.6
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 5.3e-178 628.2 363 78.8
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 1.5e-177 626.7 481 64.4
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 5.9e-177 624.8 473 64.3
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 1.0e-176 624.0 405 71.6
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 2.5e-175 619.4 480 63.8
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 7.2e-175 617.8 500 61.6
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 7.2e-175 617.8 379 75.7
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 9.3e-175 617.5 395 73.2
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 3.5e-174 615.5 498 62.9
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 1.0e-173 614.0 498 62.2
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 3.9e-173 612.1 368 76.1
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 1.9e-172 609.8 407 70.5
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 1.4e-170 603.6 402 69.9
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 1.8e-170 603.2 367 75.5
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 2.4e-170 602.8 354 77.4
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 1.0e-168 597.4 405 69.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.4e-167 593.6 468 64.3
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 2.5e-167 592.8 478 60.7
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 1.2e-166 590.5 404 69.3
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 2.6e-161 572.8 391 70.1
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 7.7e-161 571.2 401 67.8
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 1.8e-157 560.1 450 61.3
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 2.4e-154 549.7 351 71.8
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 1.2e-153 547.4 475 56.8
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 2.1e-150 536.6 494 54.9
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 3.0e-149 532.7 506 51.8
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 3.5e-145 519.2 497 55.9
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 2.8e-131 473.0 292 76.7
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 3.7e-131 472.6 399 57.4
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 1.3e-128 464.2 400 56.2
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 1.1e-122 444.5 477 51.4
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 1.9e-119 433.7 357 61.9
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 1.3e-107 394.4 406 50.0
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.0e-96 358.2 288 59.0
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 7.6e-92 342.0 210 75.7
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.6e-89 334.3 436 44.0
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 1.5e-79 301.2 460 38.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.8e-69 267.7 454 37.0
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 2.9e-67 260.4 299 46.5
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 1.8e-64 251.1 161 69.6
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 1.2e-60 238.4 405 37.5
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 3.2e-42 177.2 389 30.1
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 5.3e-37 159.8 227 39.6
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 4.1e-29 133.7 299 33.1
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 4.5e-28 130.2 93 67.7
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 9.1e-21 105.9 291 29.2
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 6.5e-19 99.8 67 68.7
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 1.3e-14 85.5 59 59.3
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 8.6e-11 72.8 112 40.2
Aqoxy7G01825 Aquilegia oxysepala HOM05D004627 ORTHO05D005745 1.3e-06 58.9 208 26.0


User provided reference genes

Program Settings