Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.2e-140 503.4 828 100.0
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 3.0e-61 241.1 202 61.4
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 3.1e-58 231.1 202 58.4
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 4.0e-58 230.7 202 58.4
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 4.0e-58 230.7 202 58.4
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 5.3e-58 230.3 202 57.9
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.8e-56 224.2 203 58.6
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 1.6e-54 218.8 202 57.4
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 5.1e-53 213.8 203 52.2
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 1.6e-51 208.8 185 56.2
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 1.9e-47 195.3 206 51.5
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 3.2e-47 194.5 205 51.2
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.9e-46 189.9 196 51.0
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 2.3e-45 188.3 203 50.2
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 3.3e-44 184.5 199 51.8
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 2.1e-43 181.8 204 46.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 2.8e-43 181.4 164 56.7
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 6.3e-43 180.3 210 48.6
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 2.6e-41 174.9 132 61.4
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 5.9e-41 173.7 193 47.2
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 7.6e-41 173.3 202 49.5
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 2.2e-40 171.8 205 46.8
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 3.8e-40 171.0 179 51.4
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 2.1e-38 165.2 202 45.5
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 2.1e-38 165.2 174 53.4
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 4.6e-38 164.1 205 45.9
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 1.3e-37 162.5 174 52.3
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 1.8e-37 162.2 210 41.9
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 8.7e-37 159.8 202 46.5
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 1.9e-36 158.7 202 43.1
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 3.3e-36 157.9 202 46.0
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 4.3e-36 157.5 198 45.5
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 7.4e-36 156.8 202 45.5
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 9.7e-36 156.4 198 44.9
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 2.8e-35 154.8 202 45.5
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 4.8e-35 154.1 203 40.9
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.1e-34 152.9 200 43.5
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 1.4e-34 152.5 143 55.9
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 4.1e-34 151.0 204 43.1
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.2e-33 149.4 190 46.8
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 2.6e-33 148.3 175 44.6
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 3.4e-33 147.9 197 42.6
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 3.8e-32 144.4 177 41.2
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 5.0e-32 144.1 191 42.9
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 1.1e-31 142.9 206 42.2
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 1.9e-31 142.1 175 45.7
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 1.2e-30 139.4 220 40.5
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-30 139.4 202 39.6
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 1.2e-30 139.4 181 44.8
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 2.1e-30 138.7 191 42.4
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 3.6e-30 137.9 94 69.1
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 1.8e-29 135.6 190 44.2
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 3.0e-29 134.8 188 42.0
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 8.8e-29 133.3 136 49.3
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.1e-28 132.9 177 38.4
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 1.1e-28 132.9 153 46.4
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 1.5e-28 132.5 166 44.0
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.5e-28 132.5 205 40.0
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 2.0e-28 132.1 207 41.5
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 2.5e-28 131.7 166 44.0
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 5.7e-28 130.6 188 38.8
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 7.4e-28 130.2 177 38.4
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 9.7e-28 129.8 165 45.5
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 9.7e-28 129.8 202 38.1
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 2.8e-27 128.3 208 39.4
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 8.2e-27 126.7 171 44.4
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 1.4e-26 125.9 169 42.6
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 1.8e-26 125.6 211 39.3
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 4.1e-26 124.4 169 42.0
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 5.3e-26 124.0 145 47.6
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 6.9e-26 123.6 210 38.1
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 6.9e-26 123.6 137 46.0
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 6.9e-26 123.6 137 45.3
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.2e-25 122.9 169 41.4
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.2e-25 122.9 169 42.0
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 2.6e-25 121.7 170 39.4
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 4.5e-25 120.9 139 44.6
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 5.9e-25 120.6 209 37.8
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 1.3e-24 119.4 199 39.2
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 1.7e-24 119.0 202 37.1
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 1.7e-24 119.0 213 37.1
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 2.9e-24 118.2 194 39.2
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 2.9e-24 118.2 170 39.4
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.9e-24 118.2 135 45.9
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 6.5e-24 117.1 137 44.5
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 6.5e-24 117.1 140 43.6
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.2e-23 114.4 167 39.5
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 4.2e-23 114.4 141 42.6
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.5e-23 114.0 143 44.1
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 1.2e-22 112.8 146 40.4
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 4.7e-22 110.9 142 40.8
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 6.1e-22 110.5 140 42.1
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 6.7e-21 107.1 155 40.6
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 8.8e-21 106.7 167 35.9
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 1.5e-20 105.9 110 49.1
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 2.0e-20 105.5 152 39.5
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 2.0e-20 105.5 155 39.4
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.7e-20 104.0 148 35.8
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 2.2e-19 102.1 192 36.5
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 3.7e-19 101.3 201 35.8
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 3.7e-19 101.3 195 33.8
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 6.3e-19 100.5 144 36.1
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 6.3e-19 100.5 219 33.8
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 5.3e-18 97.4 179 34.1
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 5.3e-18 97.4 142 36.6
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 1.2e-17 96.3 143 39.9
CAN.G1642.5 Capsicum annuum HOM05D004824 ORTHO05D003903 1.6e-17 95.9 84 56.0
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 2.0e-17 95.5 200 29.5
HPP92_026390 Vanilla planifolia HOM05D004824 ORTHO05D003903 3.5e-17 94.7 177 34.5
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 5.9e-17 94.0 125 38.4
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 1.3e-16 92.8 165 37.6
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 1.7e-16 92.4 159 34.6
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 2.2e-16 92.0 141 37.6
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 2.5e-15 88.6 125 37.6
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.2e-15 87.8 147 36.1
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 2.7e-14 85.1 80 51.2
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 8.0e-14 83.6 165 36.4
AUR62027511 Chenopodium quinoa HOM05D004824 ORTHO05D003903 1.4e-13 82.8 84 48.8
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 5.2e-13 80.9 119 37.0
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 5.2e-13 80.9 166 33.1
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 8.8e-13 80.1 92 43.5
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 2.6e-12 78.6 118 36.4
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 2.6e-12 78.6 118 36.4
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 2.6e-12 78.6 118 36.4
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 3.3e-12 78.2 168 31.0
BcaB02g06478 Brassica carinata HOM05D004824 ORTHO05D003903 4.4e-12 77.8 117 35.9
BcaB08g37396 Brassica carinata HOM05D004824 ORTHO05D017526 3.7e-11 74.7 124 33.9
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 9.1e-10 70.1 87 43.7
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 2.0e-09 68.9 127 33.1
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 4.5e-09 67.8 87 39.1
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 4.5e-09 67.8 85 41.2
CARHR014470 Cardamine hirsuta HOM05D004824 ORTHO05D017526 1.3e-08 66.2 118 34.7
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 2.2e-08 65.5 84 38.1
Eucgr.F01187 Eucalyptus grandis HOM05D004824 ORTHO05D003903 1.1e-07 63.2 72 41.7
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 1.5e-07 62.8 90 37.8
CARHR118970 Cardamine hirsuta HOM05D004824 ORTHO05D003903 3.2e-07 61.6 67 47.8
MELO3C010547.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.6e-06 59.3 64 46.9
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 6.1e-06 57.4 80 42.5


User provided reference genes

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