Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 3.0e-179 631.7 317 100.0
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 3.4e-130 468.8 325 72.9
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 3.7e-129 465.3 328 72.3
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 2.4e-128 462.6 327 71.9
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 7.8e-127 457.6 325 72.3
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.5e-125 453.4 333 70.9
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 4.3e-125 451.8 336 71.1
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 2.1e-124 449.5 336 71.1
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 8.9e-123 444.1 318 71.7
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 7.5e-122 441.0 315 72.7
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 1.7e-121 439.9 325 70.8
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 1.1e-120 437.2 329 69.3
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 1.2e-119 433.7 324 70.4
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 3.9e-118 428.7 323 68.1
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 7.3e-117 424.5 334 66.8
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 7.3e-117 424.5 325 68.9
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 7.3e-117 424.5 325 69.2
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 9.5e-117 424.1 325 68.6
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 1.2e-116 423.7 342 65.8
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.6e-116 423.3 321 69.5
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 1.6e-116 423.3 319 68.0
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 8.1e-116 421.0 320 69.1
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.1e-115 420.6 321 69.2
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 1.8e-115 419.9 323 69.3
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 6.8e-115 417.9 316 68.7
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 3.4e-114 415.6 325 67.7
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 4.4e-114 415.2 311 70.4
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 9.8e-114 414.1 321 69.2
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.3e-113 413.7 323 66.9
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 2.9e-113 412.5 320 67.2
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-112 410.2 321 68.8
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 1.9e-112 409.8 323 66.3
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 2.4e-112 409.5 320 66.9
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 1.6e-111 406.8 325 66.5
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 3.3e-109 399.1 286 71.7
Duzib192G0415 Durio zibethinus HOM05D007396 ORTHO05D009228 3.6e-108 395.6 301 68.4
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 6.2e-108 394.8 328 65.2
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 8.1e-108 394.4 328 62.5
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.1e-107 394.0 306 68.3
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 1.8e-107 393.3 331 64.4
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 5.8e-106 388.3 330 63.6
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 4.9e-105 385.2 328 63.1
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 8.4e-105 384.4 327 64.2
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 1.4e-104 383.6 329 63.2
Lsat_1_v5_gn_4_106220 Lactuca sativa HOM05D007396 ORTHO05D009228 1.9e-104 383.3 318 63.2
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 7.1e-104 381.3 326 63.2
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 9.2e-104 380.9 317 63.7
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 1.6e-103 380.2 327 63.3
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 6.0e-103 378.3 272 71.7
CDE06G1120 Ceratophyllum demersum HOM05D007396 ORTHO05D009228 1.3e-102 377.1 294 67.3
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.6e-102 374.8 318 64.5
DCAR_005735 Daucus carota HOM05D007396 ORTHO05D009228 2.5e-101 372.9 331 60.7
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 3.3e-101 372.5 326 62.6
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 7.3e-101 371.3 323 60.4
ClCG07G014720 Citrullus lanatus HOM05D007396 ORTHO05D009228 2.8e-100 369.4 319 60.2
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 3.6e-100 369.0 318 62.9
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 6.2e-100 368.2 310 64.5
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 2.4e-99 366.3 326 59.8
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 2.6e-98 362.8 299 65.2
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 2.6e-98 362.8 325 61.5
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 3.4e-98 362.5 323 61.6
MD17G1161100 Malus domestica HOM05D007396 ORTHO05D009228 4.4e-98 362.1 338 60.1
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 7.6e-98 361.3 324 60.8
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 9.9e-98 360.9 290 65.9
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 1.7e-97 360.1 293 66.2
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 2.2e-97 359.8 371 55.5
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 3.8e-97 359.0 299 64.2
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 1.3e-94 350.5 336 57.1
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 3.0e-94 349.4 360 55.0
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 2.8e-92 342.8 334 57.8
Eucgr.E02931 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.4e-88 329.7 317 58.7
Psat5g306960 Pisum sativum HOM05D007396 ORTHO05D009228 3.5e-87 325.9 288 60.4
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 7.9e-87 324.7 271 64.6
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 5.1e-86 322.0 312 56.4
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 2.5e-85 319.7 324 55.2
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 8.1e-84 314.7 278 61.2
Haze_16206 Corylus avellana HOM05D007396 ORTHO05D009228 8.1e-84 314.7 212 74.1
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 9.0e-83 311.2 225 68.0
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 1.4e-80 303.9 317 53.0
Zm00001eb328020 Zea mays HOM05D007396 ORTHO05D009228 1.0e-78 297.7 298 54.7
Actinidia31122 Actinidia chinensis HOM05D007396 ORTHO05D009228 1.1e-77 294.3 212 68.9
Potri.014G003300 Populus trichocarpa HOM05D007396 ORTHO05D009228 8.1e-76 288.1 328 54.0
Potri.004G169900 Populus trichocarpa HOM05D007396 ORTHO05D009228 8.4e-73 278.1 319 53.9
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 3.2e-72 276.2 216 66.2
Eucgr.E02547 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.6e-71 273.9 272 58.5
Eucgr.E02217 Eucalyptus grandis HOM05D007396 ORTHO05D009228 6.0e-71 271.9 191 71.2
Eucgr.E02214 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.8e-68 262.3 321 53.0
Eucgr.J03193 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.8e-68 262.3 305 52.8
Eucgr.E02162 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.3e-67 258.8 320 49.4
Eucgr.E02284 Eucalyptus grandis HOM05D007396 ORTHO05D009228 4.2e-64 249.2 270 54.8
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 7.2e-64 248.4 222 63.1
CSS0029409 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 5.1e-62 242.3 179 67.6
Eucgr.E02226 Eucalyptus grandis HOM05D007396 ORTHO05D009228 9.7e-61 238.0 176 70.5
BcaC05g25536 Brassica carinata HOM05D007396 ORTHO05D009228 2.4e-59 233.4 273 51.6
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 3.1e-59 233.0 368 40.5
MELO3C032656.2 Cucumis melo HOM05D007396 ORTHO05D009228 6.1e-55 218.8 172 65.1
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 1.1e-51 208.0 173 59.5
Thecc.06G054000 Theobroma cacao HOM05D007396 ORTHO05D009228 2.9e-49 199.9 223 52.9
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 1.1e-48 198.0 275 41.5
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 2.5e-48 196.8 271 41.0
Lj7C720T3 Lonicera japonica HOM05D007396 ORTHO05D009228 3.0e-46 189.9 166 62.0
BcaC07g38815 Brassica carinata HOM05D007396 ORTHO05D009228 2.0e-37 160.6 289 39.1
MELO3C010415.2 Cucumis melo HOM05D007396 ORTHO05D009228 1.1e-32 144.8 147 53.7
Mapoly0001s0056 Marchantia polymorpha HOM05D007396 ORTHO05D009228 1.2e-26 124.8 256 38.3
Sabra14G0002100 Salix brachista HOM05D007396 ORTHO05D009228 1.2e-18 98.2 98 54.1
Medtr2g105710 Medicago truncatula HOM05D007396 ORTHO05D009228 6.6e-17 92.4 69 66.7
BcaC05g25534 Brassica carinata HOM05D000163 ORTHO05D000219 2.5e-16 90.5 100 55.0
Actinidia31121 Actinidia chinensis HOM05D007396 ORTHO05D009228 7.5e-13 79.0 67 62.7
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 3.5e-10 70.1 180 28.9
SEGI_36165 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 1.1e-08 65.1 42 78.6


User provided reference genes

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