Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09090 Coffea canephora HOM05D006721 ORTHO05D000476 2.0e-59 232.3 121 100.0
Actinidia38949 Actinidia chinensis HOM05D006721 ORTHO05D000476 1.4e-39 166.4 107 78.5
Dinv14631 Davidia involucrata HOM05D006721 ORTHO05D000476 6.8e-39 164.1 106 76.4
Lsat_1_v5_gn_2_107641 Lactuca sativa HOM05D006721 ORTHO05D000476 1.3e-37 159.8 106 77.4
Actinidia34741 Actinidia chinensis HOM05D006721 ORTHO05D000476 2.8e-37 158.7 107 75.7
Migut.F00814 Erythranthe guttata HOM05D006721 ORTHO05D000476 2.8e-37 158.7 107 75.7
HanXRQChr11g0322821 Helianthus annuus HOM05D006721 ORTHO05D000476 8.3e-37 157.1 107 74.8
GSVIVG01036217001 Vitis vinifera HOM05D006721 ORTHO05D000476 1.1e-36 156.8 106 74.5
Nitab4.5_0000930g0080 Nicotiana tabacum HOM05D006721 ORTHO05D000476 1.4e-36 156.4 108 73.1
Cpa.g.sc162.11 Carica papaya HOM05D006721 ORTHO05D000476 1.8e-36 156.0 101 76.2
Oeu058331.1 Olea europaea HOM05D006721 ORTHO05D000476 1.8e-36 156.0 100 76.0
MSTRG.9005 Avicennia marina HOM05D006721 ORTHO05D000476 2.4e-36 155.6 105 76.2
Manes.09G149900 Manihot esculenta HOM05D006721 ORTHO05D000476 4.1e-36 154.8 109 69.7
CSS0047325 Camellia sinensis var. sinensis HOM05D006721 ORTHO05D000476 9.2e-36 153.7 103 74.8
SGA_v2.0_scaffold90G27702 Striga asiatica HOM05D006721 ORTHO05D000476 9.2e-36 153.7 103 75.7
Dinv18276 Davidia involucrata HOM05D006721 ORTHO05D000476 2.0e-35 152.5 99 77.8
ECA238G3797 Erigeron canadensis HOM05D006721 ORTHO05D000476 2.0e-35 152.5 107 71.0
Ciclev10022930m.g Citrus clementina HOM05D006721 ORTHO05D000476 3.5e-35 151.8 108 69.4
PGR142G1199 Punica granatum HOM05D006721 ORTHO05D000476 4.5e-35 151.4 107 72.0
TAR365G0041 Trochodendron aralioides HOM05D006721 ORTHO05D000476 4.5e-35 151.4 107 73.8
Nn1g02669 Nelumbo nucifera HOM05D006721 ORTHO05D000476 5.9e-35 151.0 101 75.2
Peaxi162Scf00135g00914 Petunia axillaris HOM05D006721 ORTHO05D000476 5.9e-35 151.0 97 78.4
EL10Ac4g09049 Beta vulgaris HOM05D006721 ORTHO05D000476 1.0e-34 150.2 103 71.8
Haze_04466 Corylus avellana HOM05D006721 ORTHO05D000476 1.3e-34 149.8 109 71.6
Atru.chr2.886 Acer truncatum HOM05D006721 ORTHO05D000476 1.7e-34 149.4 108 68.5
QL01p041965 Quercus lobata HOM05D006721 ORTHO05D000476 1.7e-34 149.4 103 73.8
vmacro10349 Vaccinium macrocarpon HOM05D006721 ORTHO05D000476 1.7e-34 149.4 108 69.4
CAN.G186.72 Capsicum annuum HOM05D006721 ORTHO05D000476 5.0e-34 147.9 107 68.2
Eucgr.B02129 Eucalyptus grandis HOM05D006721 ORTHO05D000476 5.0e-34 147.9 98 73.5
A03p45120 Brassica napus HOM05D006721 ORTHO05D000476 6.6e-34 147.5 108 71.3
PGSC0003DMG400025428 Solanum tuberosum HOM05D006721 ORTHO05D000476 6.6e-34 147.5 107 67.3
COL.COLO4_15417 Corchorus olitorius HOM05D006721 ORTHO05D000476 8.6e-34 147.1 112 67.9
Gohir.A13G168900 Gossypium hirsutum HOM05D006721 ORTHO05D000476 8.6e-34 147.1 95 75.8
Gohir.D13G174300 Gossypium hirsutum HOM05D006721 ORTHO05D000476 8.6e-34 147.1 95 75.8
Gorai.013G186500 Gossypium raimondii HOM05D006721 ORTHO05D000476 8.6e-34 147.1 95 75.8
Nitab4.5_0002651g0060 Nicotiana tabacum HOM05D006721 ORTHO05D000476 8.6e-34 147.1 110 70.0
Potri.019G014100 Populus trichocarpa HOM05D006721 ORTHO05D000476 8.6e-34 147.1 108 68.5
QL03p032184 Quercus lobata HOM05D006721 ORTHO05D000476 1.1e-33 146.7 103 72.8
QL03p032281 Quercus lobata HOM05D006721 ORTHO05D000476 1.1e-33 146.7 103 72.8
Sopen04g004980 Solanum pennellii HOM05D006721 ORTHO05D000476 1.1e-33 146.7 107 66.4
BraA03t13647Z Brassica rapa HOM05D006721 ORTHO05D000476 1.5e-33 146.4 108 70.4
THA.LOC104808031 Tarenaya hassleriana HOM05D006721 ORTHO05D000476 1.5e-33 146.4 107 70.1
Aqoxy2G03596 Aquilegia oxysepala HOM05D006721 ORTHO05D000476 1.9e-33 146.0 106 68.9
Lj1g0023872 Lotus japonicus HOM05D006721 ORTHO05D000476 2.5e-33 145.6 92 78.3
CARHR104660 Cardamine hirsuta HOM05D006721 ORTHO05D000476 4.3e-33 144.8 109 66.1
FAN02G4370 Fragaria x ananassa HOM05D006721 ORTHO05D000476 4.3e-33 144.8 124 62.9
PSO210G7245 Papaver somniferum HOM05D006721 ORTHO05D000476 4.3e-33 144.8 108 70.4
Sp3g27300 Schrenkiella parvula HOM05D006721 ORTHO05D000476 4.3e-33 144.8 110 69.1
CiPaw.07G077700 Carya illinoinensis HOM05D006721 ORTHO05D000476 5.6e-33 144.4 108 71.3
Glyma.03G251900 Glycine max HOM05D006721 ORTHO05D000476 5.6e-33 144.4 92 76.1
TWI56G0396 Tripterygium wilfordii HOM05D006721 ORTHO05D000476 5.6e-33 144.4 96 74.0
CsaV3_2G003760 Cucumis sativus L. HOM05D006721 ORTHO05D000476 9.5e-33 143.7 95 71.6
FvH4_6g02371 Fragaria vesca HOM05D006721 ORTHO05D000476 9.5e-33 143.7 117 65.0
PSO832G0589 Papaver somniferum HOM05D006721 ORTHO05D000476 9.5e-33 143.7 108 70.4
Carub.0003s2825 Capsella rubella HOM05D006721 ORTHO05D000476 1.2e-32 143.3 108 67.6
FAN05G5208 Fragaria x ananassa HOM05D006721 ORTHO05D000476 1.6e-32 142.9 115 65.2
FAN14G0694 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.6e-32 142.9 115 65.2
FAN14G4094 Fragaria x ananassa HOM05D004756 ORTHO05D005793 1.6e-32 142.9 115 65.2
Lalb_Chr04g0262001 Lupinus albus HOM05D006721 ORTHO05D000476 1.6e-32 142.9 109 67.0
Gohir.D12G180151 Gossypium hirsutum HOM05D006721 ORTHO05D000476 2.1e-32 142.5 94 76.6
Sabra19G0016300 Salix brachista HOM05D006721 ORTHO05D000476 2.1e-32 142.5 108 66.7
Sabra19G0026800 Salix brachista HOM05D006721 ORTHO05D000476 2.1e-32 142.5 108 66.7
Ah.04g163750 Amaranthus hybridus HOM05D006721 ORTHO05D000476 2.8e-32 142.1 106 67.0
AUR62001066 Chenopodium quinoa HOM05D006721 ORTHO05D000476 2.8e-32 142.1 107 66.4
FAN05G3615 Fragaria x ananassa HOM05D004756 ORTHO05D005793 2.8e-32 142.1 114 65.8
Sed0018278 Sechium edule HOM05D006721 ORTHO05D000476 2.8e-32 142.1 95 70.5
HPP92_000759 Vanilla planifolia HOM05D006721 ORTHO05D000476 2.8e-32 142.1 89 77.5
C03p55970 Brassica napus HOM05D006721 ORTHO05D000476 3.6e-32 141.7 108 70.4
Thhalv10023143m.g Eutrema salsugineum HOM05D006721 ORTHO05D000476 3.6e-32 141.7 108 66.7
Medtr7g116300 Medicago truncatula HOM05D006721 ORTHO05D000476 3.6e-32 141.7 113 66.4
Aa31LG8G12480 Aethionema arabicum HOM05D006721 ORTHO05D000476 4.7e-32 141.4 98 74.5
AT2G14045 Arabidopsis thaliana HOM05D006721 ORTHO05D000476 4.7e-32 141.4 97 73.2
Gorai.008G193300 Gossypium raimondii HOM05D006721 ORTHO05D000476 4.7e-32 141.4 94 74.5
RcHm_v2.0_Chr3g0450141 Rosa chinensis HOM05D006721 ORTHO05D000476 4.7e-32 141.4 109 67.9
Hund06940 Selenicereus undatus HOM05D006721 ORTHO05D000476 4.7e-32 141.4 103 65.0
BcaC01g03109 Brassica carinata HOM05D006721 ORTHO05D000476 8.0e-32 140.6 108 69.4
BolC3t17881H Brassica oleracea HOM05D006721 ORTHO05D000476 8.0e-32 140.6 108 69.4
ATR0665G282 Amborella trichopoda HOM05D006721 ORTHO05D000476 1.0e-31 140.2 91 75.8
MBI19_g37090_MAGBIO Magnolia biondii HOM05D006721 ORTHO05D000476 1.0e-31 140.2 109 67.0
Prupe.6G347400 Prunus persica HOM05D006721 ORTHO05D000476 1.0e-31 140.2 102 69.6
Phvul.006G106600 Phaseolus vulgaris HOM05D006721 ORTHO05D000476 1.8e-31 139.4 109 67.0
Psat3g006080 Pisum sativum HOM05D006721 ORTHO05D000476 1.8e-31 139.4 113 64.6
Thecc.05G276800 Theobroma cacao HOM05D006721 ORTHO05D000476 4.0e-31 138.3 107 63.6
AUR62004887 Chenopodium quinoa HOM05D006721 ORTHO05D000476 5.2e-31 137.9 107 65.4
MD12G1244800 Malus domestica HOM05D006721 ORTHO05D000476 5.2e-31 137.9 90 75.6
Cfa006323 Carpinus fangiana HOM05D006721 ORTHO05D000476 6.8e-31 137.5 95 72.6
TPR.G6950 Trifolium pratense HOM05D006721 ORTHO05D000476 6.8e-31 137.5 113 64.6
CANSAT54G3036 Cannabis sativa HOM05D006721 ORTHO05D000476 1.5e-30 136.3 109 62.4
Os07g0185800 Oryza sativa ssp. japonica HOM05D006721 ORTHO05D000476 1.5e-30 136.3 89 71.9
CDE06G1546 Ceratophyllum demersum HOM05D006721 ORTHO05D000476 7.5e-30 134.0 105 65.7
AL3G45710 Arabidopsis lyrata HOM05D006721 ORTHO05D000476 3.7e-29 131.7 108 64.8
Sc15g0002500 Simmondsia chinensis HOM05D006721 ORTHO05D000476 4.9e-29 131.3 82 75.6
Rhsim09G0138600 Rhododendron simsii HOM05D006721 ORTHO05D000476 6.4e-29 131.0 150 50.7
Zm00001eb301780 Zea mays HOM05D006721 ORTHO05D000476 6.4e-29 131.0 88 69.3
GSVIVG01014622001 Vitis vinifera HOM05D006721 ORTHO05D000476 7.0e-28 127.5 81 75.3
GSVIVG01015127001 Vitis vinifera HOM05D006721 ORTHO05D000476 9.2e-28 127.1 89 69.7
Ca_09468_v3 Cicer arietinum L. HOM05D006721 ORTHO05D000476 5.0e-26 121.3 113 60.2
Duzib128G0372 Durio zibethinus HOM05D006721 ORTHO05D000476 1.6e-24 116.3 108 60.2
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 6.8e-23 110.9 98 60.2
Mapoly0013s0055 Marchantia polymorpha HOM05D006721 ORTHO05D000476 2.6e-22 109.0 84 63.1
SMO367G0192 Selaginella moellendorffii HOM05D001348 ORTHO05D002788 2.6e-22 109.0 96 58.3
Pp3c7_11510 Physcomitrium patens HOM05D006721 ORTHO05D000476 2.4e-20 102.4 92 48.9
BraA09t38027Z Brassica rapa HOM05D006721 ORTHO05D000476 7.0e-20 100.9 82 64.6
BraA10t43135Z Brassica rapa HOM05D006721 ORTHO05D000476 7.0e-20 100.9 82 64.6
A07p07050 Brassica napus HOM05D006721 ORTHO05D000476 2.7e-19 99.0 81 64.2
BraA06t26268Z Brassica rapa HOM05D006721 ORTHO05D000476 6.0e-19 97.8 83 63.9
MELO3C004419.2 Cucumis melo HOM05D006721 ORTHO05D000476 1.1e-17 93.6 84 52.4
CBR_g51472 Chara braunii HOM05D006721 ORTHO05D000476 2.1e-16 89.4 89 48.3
arahy.Tifrunner.gnm1.ann1.DA1MAK Arachis hypogaea HOM05D006721 ORTHO05D000476 8.1e-16 87.4 84 54.8
arahy.Tifrunner.gnm1.ann1.P0L55B Arachis hypogaea HOM05D006721 ORTHO05D000476 8.1e-16 87.4 84 54.8
A09p24350 Brassica napus HOM05D006721 ORTHO05D000476 1.2e-14 83.6 58 70.7
MCO10G233 Micromonas commoda HOM05D006721 ORTHO05D000476 1.5e-14 83.2 92 51.1
A01p30750 Brassica napus HOM05D001035 ORTHO05D000476 5.8e-14 81.3 58 69.0
ClCG02G016980 Citrullus lanatus HOM05D006721 ORTHO05D000476 1.7e-13 79.7 97 45.4
FAN09G4219 Fragaria x ananassa HOM05D006721 ORTHO05D000476 2.9e-13 79.0 81 49.4
C07p11900 Brassica napus HOM05D006721 ORTHO05D000476 4.9e-13 78.2 74 62.2
Cre02.g105950 Chlamydomonas reinhardtii HOM05D006721 ORTHO05D000476 6.4e-13 77.8 85 49.4
PRCOL_00003504 Prasinoderma coloniale HOM05D006721 ORTHO05D000476 1.4e-12 76.6 64 56.2
BcaB06g29605 Brassica carinata HOM05D001035 ORTHO05D021752 1.9e-12 76.3 58 62.1
BolC7t41661H Brassica oleracea HOM05D006721 ORTHO05D000476 2.1e-11 72.8 78 57.7
Zm00001eb112450 Zea mays HOM05D006721 ORTHO05D000476 3.0e-10 68.9 51 54.9
DCAR_030976 Daucus carota HOM05D006721 ORTHO05D000476 1.6e-08 63.2 55 52.7
A05p09770 Brassica napus HOM05D006721 ORTHO05D000476 3.6e-08 62.0 45 64.4
SHI31376 Sapria himalayana HOM05D006721 ORTHO05D000476 5.2e-07 58.2 46 58.7
BolC5t30890H Brassica oleracea HOM05D000263 ORTHO05D028311 7.6e-06 54.3 41 61.0
C08p15110 Brassica napus HOM05D000263 ORTHO05D028311 9.9e-06 53.9 41 61.0
BolC8t49141H Brassica oleracea HOM05D000263 ORTHO05D028311 9.9e-06 53.9 41 61.0


User provided reference genes

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