Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g09040 Coffea canephora HOM05D006391 ORTHO05D007767 7.7e-212 740.3 407 100.0
Nitab4.5_0004928g0020 Nicotiana tabacum HOM05D006391 ORTHO05D007767 1.4e-141 506.9 414 69.6
Nitab4.5_0000856g0160 Nicotiana tabacum HOM05D006391 ORTHO05D007767 3.3e-138 495.7 412 71.1
Sopen11g002020 Solanum pennellii HOM05D006391 ORTHO05D007767 5.6e-138 495.0 409 67.7
Peaxi162Scf00120g00213 Petunia axillaris HOM05D006391 ORTHO05D007767 1.3e-137 493.8 413 67.6
Potri.013G044600 Populus trichocarpa HOM05D006391 ORTHO05D007767 1.6e-137 493.4 408 65.7
Sabra13G0041000 Salix brachista HOM05D006391 ORTHO05D007767 6.2e-137 491.5 411 65.9
PGSC0003DMG400028690 Solanum tuberosum HOM05D006391 ORTHO05D007767 8.1e-137 491.1 409 67.7
TAR636G3322 Trochodendron aralioides HOM05D001448 ORTHO05D005781 3.1e-136 489.2 363 72.7
Nn1g02693 Nelumbo nucifera HOM05D006391 ORTHO05D007767 4.5e-135 485.3 408 65.9
Solyc11g006080.2 Solanum lycopersicum HOM05D006391 ORTHO05D007767 5.8e-135 485.0 411 68.4
Actinidia06783 Actinidia chinensis HOM05D006391 ORTHO05D007767 1.3e-134 483.8 412 68.2
COL.COLO4_15424 Corchorus olitorius HOM05D006391 ORTHO05D007767 1.3e-134 483.8 366 69.9
Dinv14621 Davidia involucrata HOM05D006391 ORTHO05D007767 2.2e-134 483.0 409 72.1
Gohir.A11G251400 Gossypium hirsutum HOM05D006391 ORTHO05D007767 6.4e-134 481.5 420 62.9
Lj2A39G66 Lonicera japonica HOM05D006391 ORTHO05D007767 6.4e-134 481.5 368 72.6
Sc09g0004120 Simmondsia chinensis HOM05D006391 ORTHO05D007767 1.9e-133 479.9 421 62.7
SalBow3G3308 Salvia bowleyana HOM05D006391 ORTHO05D007767 4.2e-133 478.8 409 66.7
Gorai.007G280500 Gossypium raimondii HOM05D006391 ORTHO05D007767 9.3e-133 477.6 421 62.5
Thecc.05G276300 Theobroma cacao HOM05D006391 ORTHO05D007767 2.7e-132 476.1 365 69.3
Gohir.D11G261800 Gossypium hirsutum HOM05D006391 ORTHO05D007767 4.6e-132 475.3 421 62.7
vmacro20003 Vaccinium macrocarpon HOM05D006391 ORTHO05D007767 5.1e-131 471.9 427 68.6
GSVIVG01036208001 Vitis vinifera HOM05D006391 ORTHO05D007767 5.1e-131 471.9 366 67.8
Manes.08G137500 Manihot esculenta HOM05D006391 ORTHO05D007767 6.7e-131 471.5 413 66.3
Atru.chr2.892 Acer truncatum HOM05D006391 ORTHO05D007767 3.3e-130 469.2 365 68.5
CANSAT54G0018 Cannabis sativa HOM05D006391 ORTHO05D007767 4.3e-130 468.8 408 63.7
PGR004G0019 Punica granatum HOM05D006391 ORTHO05D007767 2.1e-129 466.5 423 64.3
CsaV3_1G045530 Cucumis sativus L. HOM05D006391 ORTHO05D007767 2.8e-129 466.1 410 62.2
CiPaw.07G078100 Carya illinoinensis HOM05D006391 ORTHO05D007767 6.2e-129 464.9 415 63.6
Prupe.6G348300 Prunus persica HOM05D006391 ORTHO05D007767 1.4e-128 463.8 432 64.1
MBI17_g17506_MAGBIO Magnolia biondii HOM05D006391 ORTHO05D007767 3.1e-128 462.6 364 69.0
Duzib177G0389 Durio zibethinus HOM05D006391 ORTHO05D007767 9.0e-128 461.1 365 67.9
CAN.G582.18 Capsicum annuum HOM05D006391 ORTHO05D007767 1.5e-127 460.3 367 69.8
Cfa006327 Carpinus fangiana HOM05D006391 ORTHO05D007767 2.0e-127 459.9 418 66.5
Eucgr.H04256 Eucalyptus grandis HOM05D006391 ORTHO05D007767 4.9e-126 455.3 414 64.7
Medtr1g079830 Medicago truncatula HOM05D006391 ORTHO05D007767 9.3e-125 451.1 412 61.2
TWI56G1126 Tripterygium wilfordii HOM05D006391 ORTHO05D007767 1.6e-124 450.3 408 60.8
EL10Ac4g09055 Beta vulgaris HOM05D006391 ORTHO05D007767 2.7e-124 449.5 412 63.6
Ciclev10020524m.g Citrus clementina HOM05D006391 ORTHO05D007767 3.5e-124 449.1 366 68.3
AUR62004876 Chenopodium quinoa HOM05D006391 ORTHO05D007767 4.6e-124 448.7 423 60.8
FAN09G3726 Fragaria x ananassa HOM05D006391 ORTHO05D007767 4.6e-124 448.7 427 60.7
AT3G04560 Arabidopsis thaliana HOM05D006391 ORTHO05D007767 7.9e-124 448.0 428 60.0
Migut.F00812 Erythranthe guttata HOM05D006391 ORTHO05D007767 7.9e-124 448.0 408 64.0
Ca_10006_v3 Cicer arietinum L. HOM05D006391 ORTHO05D007767 1.3e-123 447.2 415 60.5
Lsat_1_v5_gn_8_2721 Lactuca sativa HOM05D006391 ORTHO05D007767 1.3e-123 447.2 369 66.9
DCAR_028379 Daucus carota HOM05D006391 ORTHO05D007767 1.8e-123 446.8 335 71.3
AL3G14580 Arabidopsis lyrata HOM05D006391 ORTHO05D007767 6.7e-123 444.9 424 59.9
AUR62037609 Chenopodium quinoa HOM05D006391 ORTHO05D007767 8.7e-123 444.5 417 62.4
HanXRQChr08g0225371 Helianthus annuus HOM05D006391 ORTHO05D007767 1.5e-122 443.7 414 61.6
QL03p031977 Quercus lobata HOM05D006391 ORTHO05D007767 1.5e-122 443.7 415 62.9
MD12G1245500 Malus domestica HOM05D006391 ORTHO05D007767 1.9e-122 443.4 368 67.4
FAN05G3173 Fragaria x ananassa HOM05D006391 ORTHO05D007767 2.5e-122 443.0 427 61.8
Glyma.20G222100 Glycine max HOM05D006391 ORTHO05D007767 5.7e-122 441.8 418 60.0
FAN05G1344 Fragaria x ananassa HOM05D006391 ORTHO05D007767 1.3e-121 440.7 427 61.4
ClCG06G009350 Citrullus lanatus HOM05D006391 ORTHO05D007767 8.2e-121 438.0 349 67.0
ECA233G2464 Erigeron canadensis HOM05D006391 ORTHO05D007767 1.1e-120 437.6 369 66.7
Rhsim05G0175400 Rhododendron simsii HOM05D006391 ORTHO05D007767 1.8e-120 436.8 428 60.5
RcHm_v2.0_Chr3g0450061 Rosa chinensis HOM05D006391 ORTHO05D007767 4.1e-120 435.6 426 59.6
Lalb_Chr21g0311261 Lupinus albus HOM05D006391 ORTHO05D007767 5.3e-120 435.3 412 59.0
Aqoxy5G00275 Aquilegia oxysepala HOM05D006391 ORTHO05D007767 6.9e-120 434.9 408 60.0
Aa31LG5G14980 Aethionema arabicum HOM05D006391 ORTHO05D007767 1.2e-119 434.1 426 57.7
TPR.G10279 Trifolium pratense HOM05D006391 ORTHO05D007767 1.5e-119 433.7 411 59.9
Thhalv10020805m.g Eutrema salsugineum HOM05D006391 ORTHO05D007767 2.6e-119 433.0 429 57.3
Lj5g0002062 Lotus japonicus HOM05D006391 ORTHO05D007767 2.6e-119 433.0 409 59.9
MELO3C024661.2 Cucumis melo HOM05D006391 ORTHO05D007767 4.5e-119 432.2 438 57.5
VMungo0720G1212 Vigna mungo HOM05D006391 ORTHO05D007767 5.9e-119 431.8 420 62.1
FAN02G0817 Fragaria x ananassa HOM05D006391 ORTHO05D007767 7.7e-119 431.4 427 59.3
Glyma.10G167000 Glycine max HOM05D006391 ORTHO05D007767 1.3e-118 430.6 364 65.1
BolC5t34924H Brassica oleracea HOM05D006391 ORTHO05D007767 1.7e-118 430.3 430 58.4
ATR0680G180 Amborella trichopoda HOM05D006391 ORTHO05D007767 3.8e-118 429.1 408 59.6
AUR62001083 Chenopodium quinoa HOM05D006391 ORTHO05D007767 3.8e-118 429.1 441 58.7
PSO832G3851 Papaver somniferum HOM05D006391 ORTHO05D007767 1.9e-117 426.8 415 60.0
CSS0020771 Camellia sinensis var. sinensis HOM05D006391 ORTHO05D007767 9.4e-117 424.5 408 60.5
Phvul.L001863 Phaseolus vulgaris HOM05D006391 ORTHO05D007767 1.0e-115 421.0 421 57.5
THA.LOC104827288 Tarenaya hassleriana HOM05D006391 ORTHO05D007767 1.0e-115 421.0 425 59.8
Carub.0003s0371 Capsella rubella HOM05D006391 ORTHO05D007767 1.8e-115 420.2 385 62.1
BcaC05g30188 Brassica carinata HOM05D006391 ORTHO05D007767 3.9e-115 419.1 423 57.2
arahy.Tifrunner.gnm1.ann1.DTTE32 Arachis hypogaea HOM05D006391 ORTHO05D007767 5.1e-115 418.7 364 64.0
FAN14G3605 Fragaria x ananassa HOM05D006391 ORTHO05D007767 6.7e-115 418.3 427 61.4
PSO210G7203 Papaver somniferum HOM05D006391 ORTHO05D007767 6.7e-115 418.3 364 64.0
Sp3g03400 Schrenkiella parvula HOM05D006391 ORTHO05D007767 6.7e-115 418.3 431 55.5
unitig_32.g11831 Utricularia gibba HOM05D006391 ORTHO05D007767 8.8e-115 417.9 429 56.9
arahy.Tifrunner.gnm1.ann1.9EWV20 Arachis hypogaea HOM05D006391 ORTHO05D007767 1.1e-114 417.5 364 63.5
Hund22148 Selenicereus undatus HOM05D006391 ORTHO05D007767 1.5e-114 417.2 358 65.4
BraA05t23038Z Brassica rapa HOM05D006391 ORTHO05D007767 2.5e-114 416.4 427 57.6
FvH4_6g02310 Fragaria vesca HOM05D006391 ORTHO05D007767 5.7e-114 415.2 427 61.4
CARHR078730 Cardamine hirsuta HOM05D006391 ORTHO05D007767 9.7e-114 414.5 434 56.2
FAN14G5548 Fragaria x ananassa HOM05D006391 ORTHO05D007767 9.7e-114 414.5 427 61.1
Haze_04461 Corylus avellana HOM05D006391 ORTHO05D007767 4.1e-112 409.1 531 51.4
Sed0026137 Sechium edule HOM05D006391 ORTHO05D007767 2.6e-111 406.4 411 57.2
Sed0023982 Sechium edule HOM05D006391 ORTHO05D007767 2.2e-110 403.3 409 57.7
Sed0020342 Sechium edule HOM05D006391 ORTHO05D007767 2.9e-110 402.9 348 62.4
BcaC05g29933 Brassica carinata HOM05D006391 ORTHO05D007767 2.3e-107 393.3 423 55.3
C05p62710 Brassica napus HOM05D006391 ORTHO05D007767 8.8e-107 391.3 423 55.1
Os02g0820600 Oryza sativa ssp. japonica HOM05D006391 ORTHO05D007767 7.4e-106 388.3 377 58.4
Ah.04g163310 Amaranthus hybridus HOM05D006391 ORTHO05D007767 1.3e-105 387.5 417 57.3
A05p42930 Brassica napus HOM05D006391 ORTHO05D007767 1.8e-104 383.6 320 65.0
Zm00001eb259140 Zea mays HOM05D006391 ORTHO05D007767 1.2e-100 370.9 327 62.7
SEGI_17356 Sequoiadendron giganteum HOM05D006391 ORTHO05D007767 1.7e-97 360.5 337 59.9
SGA_v2.0_scaffold243G44310 Striga asiatica HOM05D006391 ORTHO05D007767 1.7e-94 350.5 354 57.3
CDE04G1237 Ceratophyllum demersum HOM05D006391 ORTHO05D007767 3.2e-93 346.3 314 62.1
Cpa.g.sc162.14 Carica papaya HOM05D006391 ORTHO05D007767 1.5e-90 337.4 322 59.9
MD04G1228400 Malus domestica HOM05D006391 ORTHO05D007767 2.1e-84 317.0 270 62.6
HPP92_007146 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.4e-80 303.5 269 60.2
Pp3c19_8680 Physcomitrium patens HOM05D006391 ORTHO05D007767 2.0e-79 300.4 404 47.3
SMO203G0061 Selaginella moellendorffii HOM05D006391 ORTHO05D007767 3.7e-73 279.6 334 49.1
Mapoly0044s0074 Marchantia polymorpha HOM05D006391 ORTHO05D007767 3.2e-72 276.6 384 45.1
Psat6g143040 Pisum sativum HOM05D006391 ORTHO05D007767 4.1e-72 276.2 324 52.5
Oeu034581.1 Olea europaea HOM05D006391 ORTHO05D007767 1.9e-69 267.3 214 68.7
HPP92_007142 Vanilla planifolia HOM05D006391 ORTHO05D007767 2.6e-66 256.9 304 51.0
CBR_g8309 Chara braunii HOM05D006391 ORTHO05D007767 3.3e-53 213.4 383 37.6
Oeu058337.1 Olea europaea HOM05D006391 ORTHO05D007767 7.8e-47 192.2 134 76.1
QL03p032009 Quercus lobata HOM05D006391 ORTHO05D007767 2.5e-45 187.2 133 72.9
SHI23187 Sapria himalayana HOM05D006391 ORTHO05D007767 1.3e-41 174.9 196 53.1
HPP92_007141 Vanilla planifolia HOM05D006391 ORTHO05D007767 1.8e-35 154.5 88 84.1
MCO07G609 Micromonas commoda HOM05D006391 ORTHO05D007767 9.3e-24 115.5 338 29.6
BcaB04g19320 Brassica carinata HOM05D006391 ORTHO05D007767 1.3e-17 95.1 85 62.4
MD04G1228300 Malus domestica HOM05D006391 ORTHO05D007767 2.5e-13 80.9 151 47.0
BcaC02g11594 Brassica carinata HOM05D006391 ORTHO05D007767 5.7e-13 79.7 47 74.5
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 9.6e-13 79.0 46 78.3
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 1.6e-12 78.2 46 76.1
Cre02.g105450 Chlamydomonas reinhardtii HOM05D006391 ORTHO05D007767 3.7e-12 77.0 177 31.6
PRCOL_00004538 Prasinoderma coloniale HOM05D006391 ORTHO05D007767 1.5e-10 71.6 330 25.2
BolC3t13192H Brassica oleracea HOM05D006391 ORTHO05D007767 1.0e-09 68.9 176 34.7
SHI23188 Sapria himalayana HOM05D006391 ORTHO05D007767 5.1e-06 56.6 123 39.8


User provided reference genes

Program Settings