Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g08450 Coffea canephora HOM05D004185 ORTHO05D005294 9.6e-107 390.2 200 100.0
SGA_v2.0_scaffold114G31833 Striga asiatica HOM05D004185 ORTHO05D005294 1.8e-84 316.2 200 79.0
CAN.G767.4 Capsicum annuum HOM05D004185 ORTHO05D005294 3.0e-84 315.5 202 78.7
Glyma.16G046900 Glycine max HOM05D004185 ORTHO05D005294 5.1e-84 314.7 198 79.8
PGSC0003DMG402004569 Solanum tuberosum HOM05D004185 ORTHO05D005294 6.7e-84 314.3 202 78.7
Hma1.2p1_0565F.1_g179520 Hydrangea macrophylla HOM05D004185 ORTHO05D005294 8.7e-84 313.9 200 81.0
Migut.D01934 Erythranthe guttata HOM05D004185 ORTHO05D005294 1.5e-83 313.2 199 76.9
SalBow2G1694 Salvia bowleyana HOM05D004185 ORTHO05D005294 1.9e-83 312.8 202 77.2
Oeu023432.1 Olea europaea HOM05D004185 ORTHO05D005294 2.5e-83 312.4 200 79.5
Solyc10g005930.2 Solanum lycopersicum HOM05D004185 ORTHO05D005294 4.3e-83 311.6 202 78.2
Sopen10g001890 Solanum pennellii HOM05D004185 ORTHO05D005294 4.3e-83 311.6 202 78.2
Atru.chr3.2840 Acer truncatum HOM05D004185 ORTHO05D005294 1.3e-82 310.1 200 80.5
CiPaw.07G054200 Carya illinoinensis HOM05D004185 ORTHO05D005294 3.7e-82 308.5 200 78.5
HanXRQChr03g0070171 Helianthus annuus HOM05D004185 ORTHO05D005294 6.3e-82 307.8 201 77.6
Nn1g02944 Nelumbo nucifera HOM05D004185 ORTHO05D005294 6.3e-82 307.8 201 78.6
Phvul.001G082700 Phaseolus vulgaris HOM05D004185 ORTHO05D005294 6.3e-82 307.8 198 78.3
ECA232G0163 Erigeron canadensis HOM05D004185 ORTHO05D005294 1.8e-81 306.2 201 77.1
Lj1A1083G27 Lonicera japonica HOM05D004185 ORTHO05D005294 2.4e-81 305.8 200 77.5
HanXRQChr05g0146191 Helianthus annuus HOM05D004185 ORTHO05D005294 3.1e-81 305.4 201 77.1
Cpa.g.sc139.45 Carica papaya HOM05D004185 ORTHO05D005294 4.1e-81 305.1 198 77.8
Ciclev10005565m.g Citrus clementina HOM05D004185 ORTHO05D005294 4.1e-81 305.1 198 79.3
VMungo0464G1671 Vigna mungo HOM05D004185 ORTHO05D005294 5.3e-81 304.7 198 76.8
Thecc.04G049500 Theobroma cacao HOM05D004185 ORTHO05D005294 9.1e-81 303.9 198 76.3
Ca_08226_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 1.5e-80 303.1 199 76.9
Duzib084G1135 Durio zibethinus HOM05D004185 ORTHO05D005294 1.5e-80 303.1 198 76.3
Lj1g0009190 Lotus japonicus HOM05D004185 ORTHO05D005294 1.5e-80 303.1 199 76.9
Lj2g0021694 Lotus japonicus HOM05D004185 ORTHO05D005294 1.5e-80 303.1 199 76.9
Sc07g0003880 Simmondsia chinensis HOM05D004185 ORTHO05D005294 1.5e-80 303.1 201 75.6
Haze_14968 Corylus avellana HOM05D004185 ORTHO05D005294 2.0e-80 302.8 199 78.4
Lalb_Chr02g0153581 Lupinus albus HOM05D004185 ORTHO05D005294 2.6e-80 302.4 198 77.3
MSTRG.11461 Avicennia marina HOM05D004185 ORTHO05D005294 4.5e-80 301.6 202 74.3
Cfa007152 Carpinus fangiana HOM05D004185 ORTHO05D005294 4.5e-80 301.6 199 78.4
Lsat_1_v5_gn_9_110520 Lactuca sativa HOM05D004185 ORTHO05D005294 4.5e-80 301.6 202 75.2
Medtr7g084480 Medicago truncatula HOM05D004185 ORTHO05D005294 5.9e-80 301.2 198 76.3
Psat3g092000 Pisum sativum HOM05D004185 ORTHO05D005294 5.9e-80 301.2 199 77.9
QL08p064476 Quercus lobata HOM05D004185 ORTHO05D005294 5.9e-80 301.2 199 77.9
TPR.G26467 Trifolium pratense HOM05D004185 ORTHO05D005294 7.7e-80 300.8 199 77.4
GSVIVG01032967001 Vitis vinifera HOM05D004185 ORTHO05D005294 7.7e-80 300.8 200 78.0
MD11G1131000 Malus domestica HOM05D004185 ORTHO05D005294 1.0e-79 300.4 201 76.1
TWI63G0858 Tripterygium wilfordii HOM05D004185 ORTHO05D005294 1.3e-79 300.1 204 76.0
MBI07_g13955_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 2.2e-79 299.3 202 74.3
Sabra16G0256800 Salix brachista HOM05D004185 ORTHO05D005294 2.2e-79 299.3 199 74.4
arahy.Tifrunner.gnm1.ann1.DC6XCB Arachis hypogaea HOM05D004185 ORTHO05D005294 2.9e-79 298.9 199 76.4
arahy.Tifrunner.gnm1.ann1.J4TN1Z Arachis hypogaea HOM05D004185 ORTHO05D005294 2.9e-79 298.9 199 76.4
Manes.11G075000 Manihot esculenta HOM05D004185 ORTHO05D005294 2.9e-79 298.9 199 76.4
Eucgr.F01985 Eucalyptus grandis HOM05D004185 ORTHO05D005294 5.0e-79 298.1 199 76.4
Rhsim01G0198500 Rhododendron simsii HOM05D004185 ORTHO05D005294 5.0e-79 298.1 200 75.5
Actinidia37713 Actinidia chinensis HOM05D004185 ORTHO05D005294 6.5e-79 297.7 200 75.0
TAR374G1058 Trochodendron aralioides HOM05D004185 ORTHO05D005294 1.1e-78 297.0 231 69.7
AT1G31860 Arabidopsis thaliana HOM05D004185 ORTHO05D005294 1.9e-78 296.2 199 75.4
AL1G45960 Arabidopsis lyrata HOM05D004185 ORTHO05D005294 2.5e-78 295.8 199 75.4
vmacro18393 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.5e-78 295.8 201 75.1
ATR0602G180 Amborella trichopoda HOM05D004185 ORTHO05D005294 3.2e-78 295.4 200 75.0
Gohir.D01G158300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.2e-78 295.4 198 74.7
Gorai.002G196300 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.2e-78 295.4 198 74.7
CANSAT80G1231 Cannabis sativa HOM05D004185 ORTHO05D005294 4.2e-78 295.0 201 76.1
Actinidia19546 Actinidia chinensis HOM05D004185 ORTHO05D005294 9.4e-78 293.9 200 74.5
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 9.4e-78 293.9 198 73.7
Aa31LG2G14180 Aethionema arabicum HOM05D004185 ORTHO05D005294 1.2e-77 293.5 199 74.4
Gohir.A09G051200 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-77 293.5 198 74.7
PSO017G0731 Papaver somniferum HOM05D004185 ORTHO05D005294 1.2e-77 293.5 200 74.0
MD03G1104500 Malus domestica HOM05D004185 ORTHO05D005294 1.6e-77 293.1 202 75.2
Prupe.6G095300 Prunus persica HOM05D004185 ORTHO05D005294 1.6e-77 293.1 201 75.1
Aqoxy6G01376 Aquilegia oxysepala HOM05D004185 ORTHO05D005294 2.1e-77 292.7 201 72.6
BcaB07g32843 Brassica carinata HOM05D004185 ORTHO05D005294 2.1e-77 292.7 199 74.9
Thhalv10008417m.g Eutrema salsugineum HOM05D004185 ORTHO05D005294 2.1e-77 292.7 199 74.4
CARHR031200 Cardamine hirsuta HOM05D004185 ORTHO05D005294 2.7e-77 292.4 199 74.4
PSO478G4545 Papaver somniferum HOM05D004185 ORTHO05D005294 2.7e-77 292.4 200 74.0
PGR142G0491 Punica granatum HOM05D004185 ORTHO05D005294 2.7e-77 292.4 200 73.5
TAR622G0010 Trochodendron aralioides HOM05D004185 ORTHO05D005294 2.7e-77 292.4 201 74.6
Carub.0001s3019 Capsella rubella HOM05D004185 ORTHO05D005294 3.6e-77 292.0 199 74.4
A09p34390 Brassica napus HOM05D004185 ORTHO05D005294 4.6e-77 291.6 199 73.9
BraA09t38984Z Brassica rapa HOM05D004185 ORTHO05D005294 4.6e-77 291.6 199 73.9
THA.LOC104812726 Tarenaya hassleriana HOM05D004185 ORTHO05D005294 6.1e-77 291.2 199 74.9
Sed0024479 Sechium edule HOM05D004185 ORTHO05D005294 1.0e-76 290.4 199 74.9
FAN16G0073 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.4e-76 290.0 199 75.4
BcaB03g13785 Brassica carinata HOM05D004185 ORTHO05D005294 1.8e-76 289.7 199 73.9
BraA05t21430Z Brassica rapa HOM05D004185 ORTHO05D005294 1.8e-76 289.7 199 74.4
Rhsim08G0038300 Rhododendron simsii HOM05D004185 ORTHO05D005294 1.8e-76 289.7 200 75.0
Hund11935 Selenicereus undatus HOM05D004185 ORTHO05D005294 2.3e-76 289.3 201 71.6
DCAR_009570 Daucus carota HOM05D004185 ORTHO05D005294 3.9e-76 288.5 200 74.0
FAN21G3167 Fragaria x ananassa HOM05D004185 ORTHO05D005294 3.9e-76 288.5 199 74.9
CSS0049496 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 5.1e-76 288.1 192 78.1
Potri.001G391400 Populus trichocarpa HOM05D004185 ORTHO05D005294 6.7e-76 287.7 199 72.9
FAN14G0322 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.1e-75 287.0 200 75.0
BcaC05g27950 Brassica carinata HOM05D004185 ORTHO05D005294 2.0e-75 286.2 199 73.4
A05p25460 Brassica napus HOM05D004185 ORTHO05D005294 2.0e-75 286.2 199 73.9
C05p39540 Brassica napus HOM05D004185 ORTHO05D005294 2.0e-75 286.2 199 73.4
BolC5t32695H Brassica oleracea HOM05D004185 ORTHO05D005294 2.0e-75 286.2 199 73.4
Peaxi162Scf00060g00441 Petunia axillaris HOM05D004185 ORTHO05D005294 2.0e-75 286.2 183 79.8
Sp1g27580 Schrenkiella parvula HOM05D004185 ORTHO05D005294 2.6e-75 285.8 199 73.9
BcaC05g27215 Brassica carinata HOM05D004185 ORTHO05D005294 7.4e-75 284.3 204 71.6
BolC5t31845H Brassica oleracea HOM05D004185 ORTHO05D005294 7.4e-75 284.3 204 71.6
RcHm_v2.0_Chr7g0223141 Rosa chinensis HOM05D004185 ORTHO05D005294 9.7e-75 283.9 200 74.0
unitig_0.g1440 Utricularia gibba HOM05D004185 ORTHO05D005294 1.7e-74 283.1 200 73.0
FvH4_3g33130 Fragaria vesca HOM05D004185 ORTHO05D005294 2.2e-74 282.7 199 73.9
RcHm_v2.0_Chr5g0060441 Rosa chinensis HOM05D004185 ORTHO05D005294 2.2e-74 282.7 200 74.0
Nitab4.5_0000426g0080 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.8e-74 282.3 201 74.1
FAN05G5133 Fragaria x ananassa HOM05D004185 ORTHO05D005294 4.8e-74 281.6 200 74.5
EL10Ac5g11038 Beta vulgaris HOM05D004185 ORTHO05D005294 8.2e-74 280.8 201 71.1
Gohir.D09G052300 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.4e-73 280.0 198 71.7
AUR62021660 Chenopodium quinoa HOM05D004185 ORTHO05D005294 1.8e-73 279.6 199 70.4
Atru.chr11.1029 Acer truncatum HOM05D004185 ORTHO05D005294 2.4e-73 279.3 176 81.2
AUR62008433 Chenopodium quinoa HOM05D004185 ORTHO05D005294 2.4e-73 279.3 199 70.4
Nitab4.5_0002655g0020 Nicotiana tabacum HOM05D004185 ORTHO05D005294 2.4e-73 279.3 201 73.1
SEGI_19426 Sequoiadendron giganteum HOM05D004185 ORTHO05D005294 4.1e-73 278.5 201 71.1
CDE09G0075 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 6.5e-71 271.2 201 70.6
Zm00001eb332710 Zea mays HOM05D004185 ORTHO05D005294 6.5e-71 271.2 199 69.8
CsaV3_5G025000 Cucumis sativus L. HOM05D004185 ORTHO05D005294 8.5e-71 270.8 199 70.4
Os01g0276500 Oryza sativa ssp. japonica HOM05D004185 ORTHO05D005294 8.5e-71 270.8 199 68.8
MELO3C005094.2 Cucumis melo HOM05D004185 ORTHO05D005294 1.4e-70 270.0 199 70.4
HPP92_023021 Vanilla planifolia HOM05D004185 ORTHO05D005294 2.5e-70 269.2 199 70.9
Haze_15442 Corylus avellana HOM05D004185 ORTHO05D005294 4.2e-70 268.5 192 74.0
ClCG01G007890 Citrullus lanatus HOM05D004185 ORTHO05D005294 1.0e-68 263.8 203 67.0
Gorai.006G057300 Gossypium raimondii HOM05D004185 ORTHO05D005294 6.7e-68 261.2 198 69.2
SHI18823 Sapria himalayana HOM05D004185 ORTHO05D005294 6.7e-68 261.2 211 65.4
FAN25G2535 Fragaria x ananassa HOM05D004185 ORTHO05D005294 8.8e-68 260.8 199 68.8
AagrBONN_evm.TU.Sc2ySwM_228.4587 Anthoceros agrestis HOM05D004185 ORTHO05D005294 1.5e-67 260.0 200 64.5
SMO119G0194 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.4e-65 253.4 199 64.3
CSS0023313 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 4.1e-65 251.9 186 73.7
Mapoly0010s0125 Marchantia polymorpha HOM05D004185 ORTHO05D005294 3.5e-64 248.8 197 65.0
Cc00_g25400 Coffea canephora HOM05D004185 ORTHO05D005294 1.0e-63 247.3 144 86.8
CBR_g41148 Chara braunii HOM05D004185 ORTHO05D005294 1.7e-63 246.5 210 60.5
CDE02G0170 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 5.0e-63 245.0 183 69.4
Pp3c19_11880 Physcomitrium patens HOM05D004185 ORTHO05D005294 9.4e-62 240.7 197 62.4
C05p31190 Brassica napus HOM05D004185 ORTHO05D005294 2.3e-60 236.1 167 71.3
arahy.Tifrunner.gnm1.ann1.75SEPN Arachis hypogaea HOM05D004185 ORTHO05D005294 1.2e-59 233.8 198 63.1
MD03G1104300 Malus domestica HOM05D004185 ORTHO05D005294 9.7e-59 230.7 199 63.8
CBR_g45683 Chara braunii HOM05D004185 ORTHO05D005294 2.2e-58 229.6 200 59.5
MCO14G189 Micromonas commoda HOM05D004185 ORTHO05D005294 1.8e-57 226.5 203 58.6
PRCOL_00000818 Prasinoderma coloniale HOM05D004185 ORTHO05D005294 1.1e-54 217.2 209 56.0
MBI07_g07565_MAGBIO Magnolia biondii HOM05D004185 ORTHO05D005294 6.8e-52 208.0 137 75.2
QL02p069093 Quercus lobata HOM05D004185 ORTHO05D005294 8.3e-50 201.1 146 71.9
Cre13.g576650 Chlamydomonas reinhardtii HOM05D004185 ORTHO05D005294 3.5e-48 195.7 209 53.6
FAN02G1839 Fragaria x ananassa HOM05D004185 ORTHO05D005294 1.0e-47 194.1 149 69.8
FvH4_6g09080 Fragaria vesca HOM05D004185 ORTHO05D005294 5.0e-47 191.8 136 72.1
Gorai.007G236100 Gossypium raimondii HOM05D004185 ORTHO05D005294 1.4e-44 183.7 146 65.8
Gohir.D11G219700 Gossypium hirsutum HOM05D004185 ORTHO05D005294 3.4e-43 179.1 146 65.1
CSS0015772 Camellia sinensis var. sinensis HOM05D004185 ORTHO05D005294 3.1e-41 172.6 107 77.6
Gohir.1Z049452 Gossypium hirsutum HOM05D004185 ORTHO05D005294 5.9e-40 168.3 130 66.9
Gorai.008G088200 Gossypium raimondii HOM05D004185 ORTHO05D005294 3.8e-39 165.6 197 48.2
Nn7g37500 Nelumbo nucifera HOM05D004185 ORTHO05D005294 2.4e-33 146.4 81 82.7
CDE01G0632 Ceratophyllum demersum HOM05D004185 ORTHO05D005294 2.3e-31 139.8 117 65.8
Dinv33271 Davidia involucrata HOM05D004185 ORTHO05D005294 2.6e-27 126.3 119 55.5
MD03G1104400 Malus domestica HOM05D004185 ORTHO05D005294 6.4e-26 121.7 155 48.4
vmacro12996 Vaccinium macrocarpon HOM05D004185 ORTHO05D005294 2.4e-25 119.8 135 52.6
Nn7g37501 Nelumbo nucifera HOM05D004185 ORTHO05D005294 3.3e-22 109.4 72 77.8
QL02p069129 Quercus lobata HOM05D004185 ORTHO05D005294 1.2e-19 100.9 64 79.7
Ca_29370_v3 Cicer arietinum L. HOM05D004185 ORTHO05D005294 2.2e-18 96.7 169 35.5
QL02p068903 Quercus lobata HOM05D004185 ORTHO05D005294 9.2e-17 91.3 63 76.2
Gohir.1Z049352 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-16 90.9 53 79.2
Gohir.D12G080201 Gossypium hirsutum HOM05D004185 ORTHO05D005294 1.2e-16 90.9 53 79.2
QL02p069147 Quercus lobata HOM05D004185 ORTHO05D005294 2.7e-16 89.7 66 71.2
arahy.Tifrunner.gnm1.ann1.R9VNWC Arachis hypogaea HOM05D004185 ORTHO05D085194 3.5e-16 89.4 90 54.4
Glyma.11G241900 Glycine max HOM05D004185 ORTHO05D005294 3.5e-16 89.4 64 71.9
SMO179G0001 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.0e-15 87.8 64 68.8
Prupe.6G096900 Prunus persica HOM05D004185 ORTHO05D005294 1.1e-14 84.3 92 48.9
QL02p069014 Quercus lobata HOM05D004185 ORTHO05D005294 8.1e-13 78.2 54 79.6
Gohir.D11G259201 Gossypium hirsutum HOM05D002015 ORTHO05D016007 2.2e-10 70.1 42 78.6
Gorai.005G143700 Gossypium raimondii HOM05D004185 ORTHO05D016007 2.2e-10 70.1 42 78.6
Gohir.D04G064100 Gossypium hirsutum HOM05D002015 ORTHO05D016007 4.9e-10 68.9 42 78.6
Gohir.D01G143966 Gossypium hirsutum HOM05D002015 ORTHO05D016007 8.4e-10 68.2 42 76.2
Gohir.D02G127900 Gossypium hirsutum HOM05D002015 ORTHO05D016007 1.1e-09 67.8 42 76.2
Gohir.D13G151200 Gossypium hirsutum HOM05D004185 ORTHO05D016007 1.1e-09 67.8 42 73.8
Gorai.002G177700 Gossypium raimondii HOM05D002015 ORTHO05D016007 1.4e-09 67.4 42 76.2
SMO119G0521 Selaginella moellendorffii HOM05D004185 ORTHO05D005294 1.9e-09 67.0 64 53.1
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 4.6e-08 62.4 176 28.4
DCAR_020016 Daucus carota HOM05D004185 ORTHO05D005294 1.0e-07 61.2 61 57.4
QL02p069049 Quercus lobata HOM05D004185 ORTHO05D337452 2.5e-06 56.6 43 69.8


User provided reference genes

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