Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g07910 Coffea canephora HOM05D007860 ORTHO05D009950 5.2e-30 133.7 64 100.0
Cc00_g31060 Coffea canephora HOM05D007860 ORTHO05D009950 1.2e-29 132.5 64 98.4
Cfa009596 Carpinus fangiana HOM05D007860 ORTHO05D009950 1.3e-20 102.4 64 78.1
CiPaw.01G285600 Carya illinoinensis HOM05D007860 ORTHO05D009950 3.7e-20 100.9 64 75.0
Solyc04g150108.1 Solanum lycopersicum HOM05D007860 ORTHO05D009950 3.7e-20 100.9 64 75.0
PGSC0003DMG400027747 Solanum tuberosum HOM05D007860 ORTHO05D009950 3.7e-20 100.9 64 75.0
CiPaw.01G286200 Carya illinoinensis HOM05D007860 ORTHO05D009950 1.8e-19 98.6 64 73.4
Peaxi162Scf00760g00224 Petunia axillaris HOM05D007860 ORTHO05D009950 3.2e-19 97.8 62 77.4
CAN.G786.12 Capsicum annuum HOM05D007860 ORTHO05D009950 4.1e-19 97.4 64 70.3
Thecc.10G043200 Theobroma cacao HOM05D007860 ORTHO05D009950 7.0e-19 96.7 64 68.8
Glyma.02G092000 Glycine max HOM05D007860 ORTHO05D009950 2.0e-18 95.1 64 71.9
Glyma.18G290700 Glycine max HOM05D007860 ORTHO05D009950 2.7e-18 94.7 64 70.3
Gohir.D04G062700 Gossypium hirsutum HOM05D007860 ORTHO05D009950 4.6e-18 94.0 58 72.4
Gorai.012G070100 Gossypium raimondii HOM05D007860 ORTHO05D009950 4.6e-18 94.0 58 72.4
Gohir.A05G349600 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.0e-17 92.8 58 70.7
Phvul.008G011200 Phaseolus vulgaris HOM05D007860 ORTHO05D009950 1.0e-17 92.8 64 68.8
Gohir.A07G000500 Gossypium hirsutum HOM05D007860 ORTHO05D009950 1.3e-17 92.4 58 75.9
Hund16092 Selenicereus undatus HOM05D007860 ORTHO05D009950 1.3e-17 92.4 58 70.7
unitig_747.g21379 Utricularia gibba HOM05D007860 ORTHO05D009950 1.3e-17 92.4 53 75.5
CDE08G0617 Ceratophyllum demersum HOM05D007860 ORTHO05D009950 1.7e-17 92.0 59 71.2
Nn4g22694 Nelumbo nucifera HOM05D007860 ORTHO05D009950 2.3e-17 91.7 59 74.6
Prupe.1G341800 Prunus persica HOM05D007860 ORTHO05D009950 2.3e-17 91.7 56 75.0
RcHm_v2.0_Chr4g0445811 Rosa chinensis HOM05D007860 ORTHO05D009950 3.0e-17 91.3 49 83.7
Aqoxy4G02946 Aquilegia oxysepala HOM05D007860 ORTHO05D009950 3.9e-17 90.9 64 71.9
Medtr7g026210 Medicago truncatula HOM05D007860 ORTHO05D009950 3.9e-17 90.9 64 71.9
TPR.G1333 Trifolium pratense HOM05D007860 ORTHO05D009950 3.9e-17 90.9 62 72.6
Oeu017367.1 Olea europaea HOM05D007860 ORTHO05D009950 5.0e-17 90.5 62 75.8
Sabra10G0157800 Salix brachista HOM05D007860 ORTHO05D009950 6.6e-17 90.1 58 72.4
HanXRQChr08g0220681 Helianthus annuus HOM05D007860 ORTHO05D009950 2.5e-16 88.2 62 69.4
COL.COLO4_15031 Corchorus olitorius HOM05D007860 ORTHO05D009950 3.3e-16 87.8 64 67.2
Lj1g0016082 Lotus japonicus HOM05D007860 ORTHO05D009950 4.3e-16 87.4 62 69.4
Migut.E01407 Erythranthe guttata HOM05D007860 ORTHO05D009950 5.6e-16 87.0 62 69.4
Migut.E01421 Erythranthe guttata HOM05D007860 ORTHO05D009950 5.6e-16 87.0 62 69.4
Manes.09G185000 Manihot esculenta HOM05D007860 ORTHO05D009950 5.6e-16 87.0 61 68.9
Potri.010G204200 Populus trichocarpa HOM05D007860 ORTHO05D009950 5.6e-16 87.0 58 72.4
TWI63G0334 Tripterygium wilfordii HOM05D007860 ORTHO05D009950 5.6e-16 87.0 59 66.1
HPP92_012590 Vanilla planifolia HOM05D007860 ORTHO05D009950 7.3e-16 86.7 56 69.6
Sc10g0001510 Simmondsia chinensis HOM05D007860 ORTHO05D009950 9.5e-16 86.3 54 72.2
Lalb_Chr11g0073451 Lupinus albus HOM05D007860 ORTHO05D009950 2.1e-15 85.1 57 68.4
Nn3g16785 Nelumbo nucifera HOM05D007860 ORTHO05D009950 2.1e-15 85.1 47 78.7
SalBow8G2293 Salvia bowleyana HOM05D007860 ORTHO05D009950 2.1e-15 85.1 62 66.1
vmacro04194 Vaccinium macrocarpon HOM05D007860 ORTHO05D009950 2.1e-15 85.1 62 64.5
THA.LOC104817766 Tarenaya hassleriana HOM05D007860 ORTHO05D009950 3.6e-15 84.3 58 70.7
Lsat_1_v5_gn_8_15760 Lactuca sativa HOM05D007860 ORTHO05D009950 4.7e-15 84.0 62 67.7
AT4G26055 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 6.2e-15 83.6 62 67.7
Zm00001eb205410 Zea mays HOM05D007860 ORTHO05D009950 6.2e-15 83.6 56 60.7
Aa31LG3G410 Aethionema arabicum HOM05D007860 ORTHO05D009950 8.0e-15 83.2 51 78.4
Lalb_Chr10g0091671 Lupinus albus HOM05D007860 ORTHO05D009950 8.0e-15 83.2 62 64.5
CsaV3_5G026630 Cucumis sativus L. HOM05D007860 ORTHO05D009950 2.3e-14 81.6 58 65.5
Actinidia13876 Actinidia chinensis HOM05D007860 ORTHO05D009950 3.1e-14 81.3 45 77.8
Sed0021911 Sechium edule HOM05D007860 ORTHO05D009950 4.0e-14 80.9 59 62.7
MELO3C033702.2 Cucumis melo HOM05D007860 ORTHO05D009950 5.2e-14 80.5 60 58.3
VMungo1383G1282 Vigna mungo HOM05D007860 ORTHO05D009950 5.2e-14 80.5 45 80.0
MBI05_g22876_MAGBIO Magnolia biondii HOM05D007860 ORTHO05D009950 6.8e-14 80.1 44 81.8
DCAR_011692 Daucus carota HOM05D007860 ORTHO05D009950 1.5e-13 79.0 49 79.6
Psat3g182840 Pisum sativum HOM05D007860 ORTHO05D009950 1.5e-13 79.0 43 83.7
AL7G26930 Arabidopsis lyrata HOM05D007860 ORTHO05D009950 2.6e-13 78.2 62 67.7
CSS0034636 Camellia sinensis var. sinensis HOM05D007860 ORTHO05D009950 3.4e-13 77.8 43 79.1
Ciclev10033443m.g Citrus clementina HOM05D007860 ORTHO05D009950 4.4e-13 77.4 82 56.1
MD16G1008700 Malus domestica HOM05D007860 ORTHO05D009950 7.5e-13 76.6 43 76.7
SpUn0576_0010 Schrenkiella parvula HOM05D007860 ORTHO05D009950 1.3e-12 75.9 58 65.5
PSO170G0009 Papaver somniferum HOM05D007860 ORTHO05D009950 1.7e-12 75.5 50 74.0
Thhalv10026736m.g Eutrema salsugineum HOM05D007860 ORTHO05D009950 2.2e-12 75.1 49 77.6
CARHR233560 Cardamine hirsuta HOM05D007860 ORTHO05D009950 2.9e-12 74.7 58 70.7
arahy.Tifrunner.gnm1.ann1.WKZY2Y Arachis hypogaea HOM05D007860 ORTHO05D009950 8.3e-12 73.2 42 73.8
Carub.0007s1490 Capsella rubella HOM05D007860 ORTHO05D009950 8.3e-12 73.2 43 79.1
FAN22G0325 Fragaria x ananassa HOM05D007860 ORTHO05D009950 8.3e-12 73.2 59 59.3
AT5G57080 Arabidopsis thaliana HOM05D007860 ORTHO05D009950 1.4e-11 72.4 55 65.5
BcaC07g38219 Brassica carinata HOM05D007860 ORTHO05D009950 2.4e-11 71.6 46 76.1
A08p20930 Brassica napus HOM05D007860 ORTHO05D009950 2.4e-11 71.6 46 76.1
C08p09770 Brassica napus HOM05D002589 ORTHO05D002742 2.4e-11 71.6 46 76.1
BolC8t48648H Brassica oleracea HOM05D002589 ORTHO05D002742 2.4e-11 71.6 46 76.1
BraA08t34046Z Brassica rapa HOM05D007860 ORTHO05D009950 2.4e-11 71.6 46 76.1
BraA03t10609Z Brassica rapa HOM05D007860 ORTHO05D009950 3.2e-11 71.2 42 81.0
Sp6g18800 Schrenkiella parvula HOM05D007860 ORTHO05D009950 3.2e-11 71.2 51 66.7
A03p56460 Brassica napus HOM05D002589 ORTHO05D002742 7.0e-11 70.1 62 56.5
BraA03t14716Z Brassica rapa HOM05D007860 ORTHO05D009950 7.0e-11 70.1 62 56.5
C07p54670 Brassica napus HOM05D007860 ORTHO05D009950 9.2e-11 69.7 62 56.5
BolC7t45956H Brassica oleracea HOM05D007860 ORTHO05D009950 9.2e-11 69.7 62 56.5
ClCG09G019790 Citrullus lanatus HOM05D007860 ORTHO05D009950 9.2e-11 69.7 44 72.7
BcaB01g04442 Brassica carinata HOM05D007860 ORTHO05D009950 1.2e-10 69.3 42 78.6
EL10Ac2g04657 Beta vulgaris HOM05D007860 ORTHO05D009950 1.6e-10 68.9 48 62.5
SEGI_33557 Sequoiadendron giganteum HOM05D007860 ORTHO05D009950 1.3e-09 65.9 58 60.3
BcaNung07291 Brassica carinata HOM05D007860 ORTHO05D009950 3.9e-09 64.3 42 78.6
RcHm_v2.0_Chr4g0445941 Rosa chinensis HOM05D007860 ORTHO05D009950 3.6e-07 57.8 45 68.9
Mapoly0004s0288 Marchantia polymorpha HOM05D007860 ORTHO05D009950 4.0e-06 54.3 45 60.0


User provided reference genes

Program Settings