Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-122 443.4 233 100.0
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.2e-94 349.4 233 77.7
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 1.4e-93 346.7 217 81.1
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 3.2e-93 345.5 233 82.0
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 4.1e-93 345.1 234 80.8
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 2.7e-92 342.4 234 79.5
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 7.8e-92 340.9 235 78.7
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 1.0e-91 340.5 235 75.7
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 5.0e-91 338.2 233 78.5
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.0e-91 338.2 235 79.1
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 1.5e-90 336.7 236 79.7
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.9e-90 336.3 233 75.1
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.9e-90 336.3 233 79.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 4.3e-90 335.1 238 79.4
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 5.6e-90 334.7 233 74.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 5.6e-90 334.7 233 74.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 5.6e-90 334.7 233 75.1
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.3e-90 334.3 233 74.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 7.3e-90 334.3 233 74.7
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 9.5e-90 334.0 233 77.7
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 1.6e-89 333.2 233 75.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 1.6e-89 333.2 217 78.3
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 2.8e-89 332.4 233 73.8
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 4.7e-89 331.6 238 77.3
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.7e-89 331.6 231 75.3
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 6.2e-89 331.3 240 73.3
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 1.8e-88 329.7 244 75.0
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 1.8e-88 329.7 232 73.7
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.3e-88 329.3 233 75.5
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.0e-88 328.6 233 75.5
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 4.0e-88 328.6 233 75.5
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 4.0e-88 328.6 217 77.9
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 2.6e-87 325.9 232 74.1
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 9.8e-87 323.9 212 75.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 1.3e-86 323.6 236 72.9
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 2.2e-86 322.8 231 75.3
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 2.9e-86 322.4 220 75.9
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 3.7e-86 322.0 213 76.1
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 3.7e-86 322.0 220 74.5
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 4.9e-86 321.6 217 76.0
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 4.9e-86 321.6 230 74.8
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.1e-85 320.5 238 71.4
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.4e-85 320.1 208 76.9
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 1.9e-85 319.7 237 75.5
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 1.9e-85 319.7 209 77.5
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.4e-85 319.3 230 74.3
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.4e-85 319.3 230 74.3
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 5.4e-85 318.2 213 77.9
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 5.4e-85 318.2 213 77.9
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 5.4e-85 318.2 239 74.5
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.6e-84 316.6 218 75.2
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 2.1e-84 316.2 220 75.0
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 2.7e-84 315.8 231 75.8
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 3.5e-84 315.5 206 77.7
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 3.5e-84 315.5 217 73.3
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 3.5e-84 315.5 226 73.9
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 7.8e-84 314.3 218 74.3
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 1.3e-83 313.5 218 74.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 1.3e-83 313.5 234 69.2
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 1.3e-83 313.5 214 77.1
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 1.7e-83 313.2 242 73.1
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 2.3e-83 312.8 219 74.4
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 8.6e-83 310.8 218 72.5
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.9e-82 309.7 218 73.9
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 3.3e-82 308.9 212 76.4
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 4.3e-82 308.5 234 73.1
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 7.3e-82 307.8 212 75.9
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 3.6e-81 305.4 202 74.8
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 1.8e-80 303.1 235 70.6
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 2.3e-80 302.8 214 75.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.2e-79 300.4 202 76.2
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 2.0e-79 299.7 210 73.8
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 2.6e-79 299.3 201 71.1
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 3.4e-79 298.9 211 72.5
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 4.4e-79 298.5 240 73.3
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 9.9e-79 297.4 220 70.0
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 1.3e-78 297.0 232 65.1
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 2.9e-78 295.8 234 71.8
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 6.4e-78 294.7 236 68.2
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 8.4e-78 294.3 219 69.4
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 8.4e-78 294.3 207 72.9
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 1.1e-77 293.9 207 72.9
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 1.1e-77 293.9 222 69.4
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 8.6e-75 284.3 240 66.7
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.9e-74 283.1 210 68.1
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 4.3e-74 282.0 209 68.9
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 4.3e-74 282.0 203 70.9
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 4.3e-74 282.0 208 70.7
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 9.6e-74 280.8 208 70.2
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 9.6e-74 280.8 241 67.2
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.6e-73 280.0 203 70.9
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 2.1e-73 279.6 247 64.0
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 6.2e-73 278.1 233 69.1
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 2.4e-72 276.2 233 68.2
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 1.2e-71 273.9 240 63.3
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.0e-71 273.1 235 64.3
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 3.4e-71 272.3 226 64.6
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 3.8e-70 268.9 210 64.8
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 8.4e-70 267.7 239 62.8
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 8.4e-70 267.7 236 62.7
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 1.1e-69 267.3 213 66.7
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 1.1e-69 267.3 219 69.9
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 2.4e-69 266.2 239 62.3
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 3.2e-69 265.8 213 66.7
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 3.2e-69 265.8 201 67.2
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 2.1e-68 263.1 213 64.3
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 3.5e-68 262.3 239 61.1
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 3.5e-68 262.3 239 61.1
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 3.5e-68 262.3 239 61.1
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 4.6e-68 261.9 209 66.5
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 6.0e-68 261.5 239 61.9
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 6.0e-68 261.5 239 61.9
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 3.0e-67 259.2 239 60.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 3.0e-67 259.2 210 65.2
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 5.1e-67 258.5 239 61.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 8.7e-67 257.7 239 60.3
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 1.1e-66 257.3 239 60.7
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-66 256.9 239 60.7
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 2.5e-66 256.1 239 60.7
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 4.3e-66 255.4 241 61.0
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 7.3e-66 254.6 204 66.7
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.3e-65 253.8 209 62.2
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 2.1e-65 253.1 212 61.8
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 1.4e-64 250.4 142 84.5
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 4.0e-64 248.8 219 64.4
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.0e-64 248.8 233 63.1
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 7.4e-58 228.0 233 55.8
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.0e-55 219.9 217 54.4
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 4.5e-55 218.8 173 67.1
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 1.2e-52 210.7 199 61.3
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 3.5e-52 209.1 172 63.4
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 2.3e-51 206.5 119 87.4
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 1.7e-46 190.3 213 53.1
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 4.2e-45 185.7 120 70.8
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 5.5e-45 185.3 135 71.9
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.3e-42 175.6 108 75.0
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.6e-41 173.7 104 81.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 2.2e-41 173.3 101 82.2
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 3.0e-19 99.8 62 79.0
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 9.1e-16 88.2 93 51.6
Mapoly0062s0070 Marchantia polymorpha HOM05D005580 ORTHO05D006395 5.3e-08 62.4 149 26.8
AagrBONN_evm.TU.Sc2ySwM_368.2233 Anthoceros agrestis HOM05D025074 ORTHO05D006395 2.2e-06 57.0 156 28.2
AagrBONN_evm.TU.Sc2ySwM_117.4197 Anthoceros agrestis HOM05D025074 ORTHO05D006395 6.5e-06 55.5 164 24.4


User provided reference genes

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