Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g07820 Coffea canephora HOM05D005838 ORTHO05D007177 1.2e-115 419.9 212 100.0
Oeu064376.1 Olea europaea HOM05D005838 ORTHO05D007177 2.6e-102 375.6 212 86.3
SGA_v2.0_scaffold2G01002 Striga asiatica HOM05D005838 ORTHO05D007177 1.7e-98 362.8 212 85.4
Dinv03043 Davidia involucrata HOM05D005838 ORTHO05D007177 2.3e-98 362.5 210 85.2
MSTRG.287 Avicennia marina HOM05D005838 ORTHO05D007177 6.6e-98 360.9 212 83.5
Migut.M01657 Erythranthe guttata HOM05D005838 ORTHO05D007177 3.3e-97 358.6 213 84.5
Dinv26018 Davidia involucrata HOM05D005838 ORTHO05D007177 2.1e-96 355.9 210 83.8
Lj8A84T88 Lonicera japonica HOM05D005838 ORTHO05D007177 4.0e-95 351.7 206 85.0
CSS0040522 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.4e-94 348.6 210 83.3
Hma1.2p1_0405F.1_g145680 Hydrangea macrophylla HOM05D005838 ORTHO05D007177 6.4e-93 344.4 213 81.7
PGSC0003DMG402023533 Solanum tuberosum HOM05D005838 ORTHO05D007177 1.9e-92 342.8 212 82.1
Solyc05g054430.4 Solanum lycopersicum HOM05D005838 ORTHO05D007177 4.2e-92 341.7 212 81.6
Sopen05g032920 Solanum pennellii HOM05D005838 ORTHO05D007177 4.2e-92 341.7 212 81.6
CAN.G1013.29 Capsicum annuum HOM05D005838 ORTHO05D007177 4.6e-91 338.2 212 81.6
Nitab4.5_0008565g0020 Nicotiana tabacum HOM05D005838 ORTHO05D007177 2.8e-88 328.9 236 72.9
vmacro10230 Vaccinium macrocarpon HOM05D005838 ORTHO05D007177 1.1e-87 327.0 206 79.1
Nn1g07214 Nelumbo nucifera HOM05D005838 ORTHO05D007177 9.0e-87 323.9 213 75.6
Sc11g0007930 Simmondsia chinensis HOM05D005838 ORTHO05D007177 9.0e-87 323.9 213 75.6
Lsat_1_v5_gn_1_78580 Lactuca sativa HOM05D005838 ORTHO05D007177 1.5e-86 323.2 211 77.7
Rhsim09G0166200 Rhododendron simsii HOM05D005838 ORTHO05D007177 7.6e-86 320.9 206 77.7
AUR62012091 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.3e-85 320.1 206 75.7
HanXRQChr17g0562051 Helianthus annuus HOM05D005838 ORTHO05D007177 1.3e-85 320.1 210 75.2
AUR62039375 Chenopodium quinoa HOM05D005838 ORTHO05D007177 1.7e-85 319.7 206 75.2
GSVIVG01024370001 Vitis vinifera HOM05D005838 ORTHO05D007177 4.9e-85 318.2 207 75.4
Aqoxy6G01179 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 1.4e-84 316.6 213 72.8
Peaxi162Scf00886g00023 Petunia axillaris HOM05D005838 ORTHO05D007177 1.4e-84 316.6 199 80.9
HPP92_027375 Vanilla planifolia HOM05D005838 ORTHO05D007177 5.4e-84 314.7 213 72.8
Aqoxy3G02271 Aquilegia oxysepala HOM05D005838 ORTHO05D007177 4.6e-83 311.6 213 71.8
TAR623G0537 Trochodendron aralioides HOM05D005838 ORTHO05D007177 1.0e-82 310.5 200 77.0
QL08p059697 Quercus lobata HOM05D005838 ORTHO05D007177 1.7e-82 309.7 210 71.4
Nitab4.5_0025932g0010 Nicotiana tabacum HOM05D005838 ORTHO05D007177 3.0e-82 308.9 209 76.6
HanXRQChr14g0458031 Helianthus annuus HOM05D005838 ORTHO05D007177 5.1e-82 308.1 194 77.8
CiPaw.01G287700 Carya illinoinensis HOM05D005838 ORTHO05D007177 6.6e-82 307.8 210 71.0
TAR369G1142 Trochodendron aralioides HOM05D005838 ORTHO05D007177 8.7e-82 307.4 193 78.2
Hund16085 Selenicereus undatus HOM05D005838 ORTHO05D007177 5.6e-81 304.7 213 72.8
CDE04G0192 Ceratophyllum demersum HOM05D005838 ORTHO05D007177 7.3e-81 304.3 213 71.4
EL10Ac2g04744 Beta vulgaris HOM05D005838 ORTHO05D007177 9.6e-81 303.9 228 67.5
Haze_17070 Corylus avellana HOM05D005838 ORTHO05D007177 1.1e-79 300.4 206 70.4
Os01g0248600 Oryza sativa ssp. japonica HOM05D005838 ORTHO05D007177 1.1e-79 300.4 213 68.5
DCAR_011703 Daucus carota HOM05D005838 ORTHO05D007177 4.0e-79 298.5 182 81.3
PSO339G6019 Papaver somniferum HOM05D005838 ORTHO05D007177 5.3e-79 298.1 213 69.0
Zm00001eb331580 Zea mays HOM05D005838 ORTHO05D007177 1.2e-78 297.0 213 68.1
CANSAT78G0186 Cannabis sativa HOM05D005838 ORTHO05D007177 7.6e-78 294.3 217 67.7
PSO541G0023 Papaver somniferum HOM05D005838 ORTHO05D007177 1.3e-77 293.5 213 69.0
Gohir.A10G219500 Gossypium hirsutum HOM05D005838 ORTHO05D007177 4.9e-77 291.6 210 69.5
Gohir.D10G229000 Gossypium hirsutum HOM05D005838 ORTHO05D007177 4.9e-77 291.6 210 69.5
Gorai.011G261500 Gossypium raimondii HOM05D005838 ORTHO05D007177 4.9e-77 291.6 210 69.5
Thecc.10G041400 Theobroma cacao HOM05D005838 ORTHO05D007177 4.9e-77 291.6 210 70.5
Sed0000199 Sechium edule HOM05D005838 ORTHO05D007177 8.4e-77 290.8 213 66.2
Duzib114G0236 Durio zibethinus HOM05D005838 ORTHO05D007177 2.4e-76 289.3 210 69.0
Eucgr.J00011 Eucalyptus grandis HOM05D005838 ORTHO05D007177 7.1e-76 287.7 215 70.2
TPR.G2804 Trifolium pratense HOM05D005838 ORTHO05D007177 7.1e-76 287.7 210 68.1
FvH4_7g22520 Fragaria vesca HOM05D005838 ORTHO05D007177 9.3e-76 287.3 213 67.1
FAN06G0860 Fragaria x ananassa HOM05D005838 ORTHO05D007177 9.3e-76 287.3 213 67.1
FAN06G0984 Fragaria x ananassa HOM05D005838 ORTHO05D007177 9.3e-76 287.3 213 67.1
MELO3C024840.2 Cucumis melo HOM05D005838 ORTHO05D007177 2.1e-75 286.2 213 66.2
CsaV3_4G009680 Cucumis sativus L. HOM05D005838 ORTHO05D007177 2.1e-75 286.2 208 66.3
ECA238G0467 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.1e-75 286.2 201 68.2
Lalb_Chr22g0360471 Lupinus albus HOM05D005838 ORTHO05D007177 2.1e-75 286.2 210 67.1
Manes.07G116600 Manihot esculenta HOM05D005838 ORTHO05D007177 2.1e-75 286.2 212 67.0
FAN10G2643 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.7e-75 285.8 213 66.7
VMungo1383G0749 Vigna mungo HOM05D005838 ORTHO05D007177 2.7e-75 285.8 210 65.7
ATR0579G085 Amborella trichopoda HOM05D005838 ORTHO05D007177 1.8e-74 283.1 213 64.3
Glyma.16G058300 Glycine max HOM05D005838 ORTHO05D007177 1.8e-74 283.1 210 66.2
FAN01G2632 Fragaria x ananassa HOM05D005838 ORTHO05D007177 2.3e-74 282.7 207 67.1
Phvul.001G114700 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 2.3e-74 282.7 210 65.2
Ca_24072_v3 Cicer arietinum L. HOM05D005838 ORTHO05D007177 3.9e-74 282.0 210 66.2
RcHm_v2.0_Chr1g0367201 Rosa chinensis HOM05D005838 ORTHO05D007177 3.9e-74 282.0 213 65.7
arahy.Tifrunner.gnm1.ann1.5TUK4V Arachis hypogaea HOM05D005838 ORTHO05D007177 6.7e-74 281.2 210 66.2
MD01G1134500 Malus domestica HOM05D005838 ORTHO05D007177 6.7e-74 281.2 213 63.8
FAN01G2297 Fragaria x ananassa HOM05D005838 ORTHO05D007177 8.7e-74 280.8 207 66.7
MBI14_g35405_MAGBIO Magnolia biondii HOM05D005838 ORTHO05D007177 1.1e-73 280.4 213 67.6
FAN03G0424 Fragaria x ananassa HOM05D005838 ORTHO05D007177 1.5e-73 280.0 206 67.0
Prupe.2G235900 Prunus persica HOM05D005838 ORTHO05D007177 1.5e-73 280.0 213 63.4
COL.COLO4_15048 Corchorus olitorius HOM05D005838 ORTHO05D007177 1.9e-73 279.6 211 65.9
MD07G1199100 Malus domestica HOM05D005838 ORTHO05D007177 2.5e-73 279.3 213 62.4
Medtr7g029455 Medicago truncatula HOM05D005838 ORTHO05D007177 5.6e-73 278.1 216 64.4
SEGI_05999 Sequoiadendron giganteum HOM05D005838 ORTHO05D007177 9.6e-73 277.3 213 65.3
Atru.chr12.445 Acer truncatum HOM05D005838 ORTHO05D007177 2.1e-72 276.2 206 66.5
Ca_13046_v3 Cicer arietinum L. HOM05D006351 ORTHO05D007796 2.1e-72 276.2 206 66.0
arahy.Tifrunner.gnm1.ann1.YA5U61 Arachis hypogaea HOM05D005838 ORTHO05D007177 3.7e-72 275.4 206 66.0
Ciclev10033314m.g Citrus clementina HOM05D005838 ORTHO05D007177 6.2e-72 274.6 197 69.0
TWI34G1817 Tripterygium wilfordii HOM05D005838 ORTHO05D007177 8.1e-72 274.2 212 64.2
arahy.Tifrunner.gnm1.ann1.3RZV8E Arachis hypogaea HOM05D005838 ORTHO05D007177 1.4e-71 273.5 206 65.5
Aa31sc79G70 Aethionema arabicum HOM05D005838 ORTHO05D007177 2.4e-71 272.7 213 64.3
Sp3g10660 Schrenkiella parvula HOM05D005838 ORTHO05D007177 3.1e-71 272.3 213 63.8
arahy.Tifrunner.gnm1.ann1.9R8UEA Arachis hypogaea HOM05D005838 ORTHO05D007177 5.3e-71 271.6 206 65.0
Sabra10G0157100 Salix brachista HOM05D005838 ORTHO05D007177 6.9e-71 271.2 212 62.7
Lj1g0024127 Lotus japonicus HOM05D005838 ORTHO05D007177 9.0e-71 270.8 207 64.7
Potri.010G203600 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.2e-70 270.4 212 62.3
Thhalv10021517m.g Eutrema salsugineum HOM05D005838 ORTHO05D007177 3.4e-70 268.9 213 62.9
CARHR087030 Cardamine hirsuta HOM05D005838 ORTHO05D007177 5.8e-70 268.1 213 62.9
AL3G24160 Arabidopsis lyrata HOM05D005838 ORTHO05D007177 7.6e-70 267.7 213 63.8
BolC3t16845H Brassica oleracea HOM05D005838 ORTHO05D007177 1.3e-69 266.9 213 62.9
AT3G12530 Arabidopsis thaliana HOM05D005838 ORTHO05D007177 2.9e-69 265.8 213 63.4
BraA03t12920Z Brassica rapa HOM05D005838 ORTHO05D007177 8.4e-69 264.2 213 62.9
Carub.0003s1186 Capsella rubella HOM05D005838 ORTHO05D007177 1.1e-68 263.8 213 62.9
C03p45720 Brassica napus HOM05D005838 ORTHO05D007177 1.9e-68 263.1 206 63.1
ECA236G5038 Erigeron canadensis HOM05D005838 ORTHO05D007177 2.5e-68 262.7 186 67.2
BcaB04g21071 Brassica carinata HOM05D005838 ORTHO05D007177 9.3e-68 260.8 217 63.1
A03p37670 Brassica napus HOM05D005838 ORTHO05D007177 9.3e-68 260.8 206 63.1
THA.LOC104827330 Tarenaya hassleriana HOM05D005838 ORTHO05D007177 2.7e-67 259.2 194 66.0
Actinidia13881 Actinidia chinensis HOM05D005838 ORTHO05D007177 1.3e-66 256.9 156 82.1
Mapoly0001s0197 Marchantia polymorpha HOM05D005838 ORTHO05D007177 5.7e-65 251.5 211 56.9
Duzib128G0804 Durio zibethinus HOM05D005838 ORTHO05D007177 2.8e-64 249.2 191 66.0
PGR044G1343 Punica granatum HOM05D005838 ORTHO05D007177 2.0e-62 243.0 206 63.1
Pp3c24_19790 Physcomitrium patens HOM05D005838 ORTHO05D007177 7.6e-62 241.1 215 56.3
SMO358G0240 Selaginella moellendorffii HOM05D005838 ORTHO05D007177 1.0e-61 240.7 179 64.2
SalBow6G6757 Salvia bowleyana HOM05D005838 ORTHO05D007177 9.3e-60 234.2 135 88.9
Phvul.004G101800 Phaseolus vulgaris HOM05D005838 ORTHO05D007177 4.5e-54 215.3 145 68.3
CBR_g83733 Chara braunii HOM05D005838 ORTHO05D007177 2.7e-51 206.1 203 52.7
Potri.008G056200 Populus trichocarpa HOM05D005838 ORTHO05D007177 1.5e-46 190.3 212 50.0
AagrBONN_evm.TU.Sc2ySwM_117.2288 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.7e-45 186.8 208 49.0
ECA240G3935 Erigeron canadensis HOM05D005838 ORTHO05D007177 3.1e-39 166.0 113 69.9
PRCOL_00001833 Prasinoderma coloniale HOM05D005838 ORTHO05D007177 2.8e-32 142.9 179 38.5
MCO01G144 Micromonas commoda HOM05D005838 ORTHO05D007177 1.1e-31 141.0 168 42.3
ClCG10G009550 Citrullus lanatus HOM05D005838 ORTHO05D007177 5.5e-28 128.6 79 72.2
Cre01.g029100 Chlamydomonas reinhardtii HOM05D005838 ORTHO05D007177 7.2e-28 128.3 177 42.4
Ah.04g162270 Amaranthus hybridus HOM05D005838 ORTHO05D007177 4.0e-26 122.5 63 84.1
AagrBONN_evm.TU.Sc2ySwM_368.230 Anthoceros agrestis HOM05D005838 ORTHO05D007177 1.5e-25 120.6 114 49.1
unitig_27.g25062 Utricularia gibba HOM05D005838 ORTHO05D007177 2.0e-22 110.2 105 54.3
BcaC09g48252 Brassica carinata HOM05D000758 ORTHO05D001216 6.8e-18 95.1 186 35.5
Oeu048244.1 Olea europaea HOM05D005838 ORTHO05D007177 8.8e-18 94.7 50 82.0
CSS0016900 Camellia sinensis var. sinensis HOM05D005838 ORTHO05D007177 3.7e-16 89.4 46 82.6
Cpa.g.sc1.409 Carica papaya HOM05D005838 ORTHO05D007177 1.2e-14 84.3 90 53.3
C01p52640 Brassica napus HOM05D005838 ORTHO05D007177 2.9e-13 79.7 59 64.4
BolC1t05204H Brassica oleracea HOM05D005838 ORTHO05D007177 9.5e-12 74.7 55 65.5
C05p55400 Brassica napus HOM05D005838 ORTHO05D007177 2.8e-11 73.2 79 49.4
BolC5t34206H Brassica oleracea HOM05D005838 ORTHO05D007177 6.1e-11 72.0 84 47.6
Dinv18752 Davidia involucrata HOM05D036176 ORTHO05D007177 1.8e-10 70.5 59 59.3
BNapus_Darmor_BZH_scaffold_149p00070 Brassica napus HOM05D005838 ORTHO05D041122 4.0e-10 69.3 150 34.7
Psat7g263960 Pisum sativum HOM05D005838 ORTHO05D007177 1.1e-07 61.2 49 61.2
Actinidia29229 Actinidia chinensis HOM05D005838 ORTHO05D007177 2.4e-07 60.1 40 72.5
SGA_v2.0_scaffold3389G54328 Striga asiatica HOM05D006818 ORTHO05D007177 2.4e-07 60.1 46 60.9
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 2.0e-06 57.0 42 61.9


User provided reference genes

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