Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06860 Coffea canephora HOM05D007615 ORTHO05D009643 1.2e-109 399.8 201 100.0
QL08p062684 Quercus lobata HOM05D007615 ORTHO05D009643 4.2e-62 241.9 196 61.2
CiPaw.01G296100 Carya illinoinensis HOM05D007615 ORTHO05D009643 2.6e-59 232.6 201 57.2
Potri.010G192300 Populus trichocarpa HOM05D007615 ORTHO05D009643 6.3e-58 228.0 198 60.6
Sabra10G0147900 Salix brachista HOM05D007615 ORTHO05D009643 8.3e-58 227.6 198 60.1
Actinidia00935 Actinidia chinensis HOM05D007615 ORTHO05D009643 2.0e-56 223.0 198 57.1
Ciclev10032806m.g Citrus clementina HOM05D007615 ORTHO05D009643 2.0e-56 223.0 194 57.2
Rhsim09G0172300 Rhododendron simsii HOM05D007615 ORTHO05D009643 7.8e-56 221.1 201 56.2
TWI53G1973 Tripterygium wilfordii HOM05D007615 ORTHO05D009643 7.8e-56 221.1 198 56.1
TAR636G2052 Trochodendron aralioides HOM05D007615 ORTHO05D009643 7.8e-56 221.1 200 56.5
Haze_17188 Corylus avellana HOM05D007615 ORTHO05D009643 2.3e-55 219.5 187 59.4
CSS0034825 Camellia sinensis var. sinensis HOM05D007615 ORTHO05D009643 2.9e-55 219.2 171 64.9
TAR636G3510 Trochodendron aralioides HOM05D007615 ORTHO05D009643 8.6e-55 217.6 200 56.0
vmacro10061 Vaccinium macrocarpon HOM05D007615 ORTHO05D009643 1.5e-54 216.9 194 57.7
Atru.chr12.235 Acer truncatum HOM05D007615 ORTHO05D009643 1.9e-54 216.5 193 58.5
Phvul.008G225800 Phaseolus vulgaris HOM05D007615 ORTHO05D009643 2.3e-52 209.5 199 54.3
Dinv20960 Davidia involucrata HOM05D000277 ORTHO05D000214 5.2e-52 208.4 174 60.9
Dinv20983 Davidia involucrata HOM05D000277 ORTHO05D000214 5.2e-52 208.4 174 60.9
CANSAT56G1044 Cannabis sativa HOM05D007615 ORTHO05D009643 3.4e-51 205.7 207 52.7
ECA238G0429 Erigeron canadensis HOM05D007615 ORTHO05D009643 1.7e-50 203.4 194 56.7
PSO384G4204 Papaver somniferum HOM05D007615 ORTHO05D009643 1.7e-50 203.4 202 55.4
Eucgr.K02662 Eucalyptus grandis HOM05D007615 ORTHO05D009643 3.7e-50 202.2 195 49.7
Gohir.A08G018800 Gossypium hirsutum HOM05D007615 ORTHO05D009643 3.7e-50 202.2 199 51.8
PSO339G1281 Papaver somniferum HOM05D007615 ORTHO05D009643 6.4e-50 201.4 202 55.4
Glyma.14G061700 Glycine max HOM05D007615 ORTHO05D009643 1.1e-49 200.7 201 52.7
Sed0010184 Sechium edule HOM05D007615 ORTHO05D009643 1.4e-49 200.3 197 51.3
Cfa001360 Carpinus fangiana HOM05D007615 ORTHO05D009643 1.9e-49 199.9 159 61.6
COL.COLO4_24429 Corchorus olitorius HOM05D007615 ORTHO05D009643 1.9e-49 199.9 194 51.5
Gohir.D08G029400 Gossypium hirsutum HOM05D007615 ORTHO05D009643 5.4e-49 198.4 199 51.3
MELO3C008283.2 Cucumis melo HOM05D007615 ORTHO05D009643 7.0e-49 198.0 200 54.0
Gorai.004G026800 Gossypium raimondii HOM05D007615 ORTHO05D009643 9.2e-49 197.6 199 50.8
Prupe.2G246900 Prunus persica HOM05D007615 ORTHO05D009643 1.2e-48 197.2 193 53.4
LjContig00357g0021515 Lotus japonicus HOM05D007615 ORTHO05D009643 3.5e-48 195.7 201 50.2
CsaV3_6G001660 Cucumis sativus L. HOM05D007615 ORTHO05D009643 6.0e-48 194.9 199 52.8
RcHm_v2.0_Chr1g0369501 Rosa chinensis HOM05D007615 ORTHO05D009643 6.0e-48 194.9 192 53.6
Lalb_Chr17g0346631 Lupinus albus HOM05D007615 ORTHO05D009643 1.0e-47 194.1 202 49.5
MD07G1214900 Malus domestica HOM05D007615 ORTHO05D009643 1.7e-47 193.4 188 52.1
Sopen04g004760 Solanum pennellii HOM05D007615 ORTHO05D009643 5.0e-47 191.8 195 54.4
Ca_05936_v3 Cicer arietinum L. HOM05D007615 ORTHO05D009643 6.6e-47 191.4 200 50.5
Nn2g11402 Nelumbo nucifera HOM05D007615 ORTHO05D009643 6.6e-47 191.4 201 50.2
PGSC0003DMG400016017 Solanum tuberosum HOM05D007615 ORTHO05D009643 6.6e-47 191.4 194 51.5
Thecc.09G179400 Theobroma cacao HOM05D007615 ORTHO05D009643 6.6e-47 191.4 199 49.2
Manes.07G125900 Manihot esculenta HOM05D007615 ORTHO05D009643 8.6e-47 191.0 154 61.7
Medtr5g081970 Medicago truncatula HOM05D007615 ORTHO05D009643 1.9e-46 189.9 200 47.5
VMungo0647G1713 Vigna mungo HOM05D007615 ORTHO05D009643 1.9e-46 189.9 190 52.6
ClCG11G006310 Citrullus lanatus HOM05D007615 ORTHO05D009643 2.5e-46 189.5 203 48.8
PGR142G0690 Punica granatum HOM05D007615 ORTHO05D009643 2.5e-46 189.5 198 51.0
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 3.3e-46 189.1 202 47.5
Aqoxy4G02652 Aquilegia oxysepala HOM05D007615 ORTHO05D009643 4.3e-46 188.7 199 51.8
Nitab4.5_0001654g0050 Nicotiana tabacum HOM05D007615 ORTHO05D009643 4.3e-46 188.7 200 54.0
HanXRQChr07g0202461 Helianthus annuus HOM05D007615 ORTHO05D009643 7.3e-46 188.0 202 52.5
Cpa.g.sc19.199 Carica papaya HOM05D007615 ORTHO05D009643 9.5e-46 187.6 199 51.3
Psat2g035440 Pisum sativum HOM05D007615 ORTHO05D009643 9.5e-46 187.6 193 49.7
Duzib170G1068 Durio zibethinus HOM05D007615 ORTHO05D009643 3.6e-45 185.7 138 65.2
Sc11g0007250 Simmondsia chinensis HOM05D007615 ORTHO05D009643 1.1e-44 184.1 201 47.3
FAN01G2468 Fragaria x ananassa HOM05D007615 ORTHO05D009643 8.9e-44 181.0 189 51.9
Nitab4.5_0000737g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 2.0e-43 179.9 140 68.6
FAN10G2819 Fragaria x ananassa HOM05D007615 ORTHO05D009643 2.6e-43 179.5 190 51.6
EL10Ac2g04791 Beta vulgaris HOM05D007615 ORTHO05D009643 1.3e-42 177.2 149 61.1
FAN06G4073 Fragaria x ananassa HOM05D007615 ORTHO05D009643 2.2e-42 176.4 182 51.6
FAN03G2533 Fragaria x ananassa HOM05D007615 ORTHO05D009643 3.7e-42 175.6 189 51.9
Lsat_1_v5_gn_2_121681 Lactuca sativa HOM05D000277 ORTHO05D000214 1.4e-41 173.7 142 60.6
Oeu063511.1 Olea europaea HOM05D007615 ORTHO05D009643 2.4e-41 172.9 158 58.2
Ah.16g103150 Amaranthus hybridus HOM05D007615 ORTHO05D009643 3.2e-41 172.6 177 53.1
TPR.G19858 Trifolium pratense HOM05D007615 ORTHO05D009643 7.8e-40 167.9 203 45.8
Psat3g208000 Pisum sativum HOM05D007615 ORTHO05D009643 1.3e-39 167.2 133 60.9
DCAR_012632 Daucus carota HOM05D007615 ORTHO05D009643 6.6e-39 164.9 141 60.3
Dinv34419 Davidia involucrata HOM05D007615 ORTHO05D009643 2.8e-37 159.5 195 48.7
Potri.008G065101 Populus trichocarpa HOM05D007615 ORTHO05D009643 1.4e-36 157.1 139 56.1
Hund13833 Selenicereus undatus HOM05D007615 ORTHO05D009643 3.1e-36 156.0 172 45.3
RcHm_v2.0_Chr3g0468601 Rosa chinensis HOM05D007615 ORTHO05D009643 3.4e-35 152.5 187 48.7
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 5.8e-35 151.8 188 44.1
unitig_62.g23933 Utricularia gibba HOM05D007615 ORTHO05D009643 8.3e-34 147.9 141 53.2
Peaxi162Scf00079g00249 Petunia axillaris HOM05D007615 ORTHO05D009643 1.1e-33 147.5 119 65.5
Migut.F01421 Erythranthe guttata HOM05D007615 ORTHO05D009643 9.2e-33 144.4 201 43.8
SalBow6G0125 Salvia bowleyana HOM05D007615 ORTHO05D009643 1.0e-31 141.0 179 43.6
Aa31LG10G10810 Aethionema arabicum HOM05D007615 ORTHO05D009643 3.9e-31 139.0 191 42.9
AT3G55820 Arabidopsis thaliana HOM05D007615 ORTHO05D009643 3.9e-31 139.0 200 39.0
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 6.6e-31 138.3 136 52.9
THA.LOC104810077 Tarenaya hassleriana HOM05D007615 ORTHO05D009643 1.9e-30 136.7 190 43.2
AL5G37110 Arabidopsis lyrata HOM05D007615 ORTHO05D009643 9.5e-30 134.4 199 38.2
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 1.2e-29 134.0 170 43.5
C08p31140 Brassica napus HOM05D007615 ORTHO05D009643 2.8e-29 132.9 192 41.1
Carub.0005s2260 Capsella rubella HOM05D007615 ORTHO05D009643 2.8e-29 132.9 193 37.3
CARHR165930 Cardamine hirsuta HOM05D007615 ORTHO05D009643 2.8e-29 132.9 196 40.8
BolC8t50735H Brassica oleracea HOM05D007615 ORTHO05D009643 4.7e-29 132.1 192 41.1
Sp5g06670 Schrenkiella parvula HOM05D007615 ORTHO05D009643 4.7e-29 132.1 191 40.3
CDE10G1314 Ceratophyllum demersum HOM05D007615 ORTHO05D009643 1.4e-28 130.6 160 42.5
Thhalv10010736m.g Eutrema salsugineum HOM05D007615 ORTHO05D009643 3.1e-28 129.4 190 40.0
A09p48810 Brassica napus HOM05D007615 ORTHO05D009643 5.2e-28 128.6 190 41.1
BraA09t40334Z Brassica rapa HOM05D007615 ORTHO05D009643 5.2e-28 128.6 190 41.1
HPP92_006631 Vanilla planifolia HOM05D007615 ORTHO05D009643 6.8e-28 128.3 158 46.8
SEGI_38309 Sequoiadendron giganteum HOM05D007615 ORTHO05D009643 2.6e-27 126.3 195 39.0
BcaB01g00059 Brassica carinata HOM05D007615 ORTHO05D009643 1.1e-22 110.9 195 38.5
Mapoly0011s0100 Marchantia polymorpha HOM05D007615 ORTHO05D009643 9.0e-20 101.3 207 33.8
Oeu046579.1 Olea europaea HOM05D007615 ORTHO05D009643 1.1e-17 94.4 123 45.5
Nitab4.5_0002613g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 5.4e-17 92.0 80 58.8
Pp3c3_19950 Physcomitrium patens HOM05D007615 ORTHO05D009643 2.7e-16 89.7 147 34.7
Manes.10G016915 Manihot esculenta HOM05D007615 ORTHO05D009643 7.3e-14 81.6 122 40.2
AagrBONN_evm.TU.Sc2ySwM_368.2678 Anthoceros agrestis HOM05D007615 ORTHO05D009643 9.9e-11 71.2 194 26.3
SMO139G0141 Selaginella moellendorffii HOM05D007615 ORTHO05D009643 2.2e-10 70.1 139 31.7
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 2.2e-10 70.1 139 31.7


User provided reference genes

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