Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.5e-280 967.6 482 100.0
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 3.7e-205 718.4 478 73.4
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.7e-202 709.5 479 73.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 4.2e-201 704.9 480 72.9
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 8.3e-189 664.1 470 69.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 4.6e-187 658.3 477 68.6
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 1.3e-186 656.8 486 66.3
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 2.3e-186 656.0 474 69.0
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 3.9e-186 655.2 481 67.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 1.5e-185 653.3 472 65.5
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 7.3e-185 651.0 471 67.3
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 9.5e-185 650.6 473 68.1
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 2.8e-184 649.0 484 66.7
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 6.2e-184 647.9 469 67.6
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 1.8e-183 646.4 494 65.8
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.3e-183 646.0 476 66.4
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 2.3e-183 646.0 482 64.7
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 3.1e-183 645.6 462 69.0
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.5e-182 643.3 470 67.7
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 7.5e-182 641.0 465 65.8
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.5e-182 641.0 471 66.9
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 1.3e-181 640.2 481 65.1
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 2.9e-181 639.0 471 67.7
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 4.9e-181 638.3 473 67.0
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 6.4e-181 637.9 473 67.2
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.4e-180 636.7 473 67.0
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.9e-180 636.3 481 65.3
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 7.0e-180 634.4 471 66.7
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.2e-179 633.6 471 67.1
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 1.6e-179 633.3 465 68.2
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.6e-179 633.3 472 65.9
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 7.8e-179 630.9 471 65.8
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 7.8e-179 630.9 481 64.2
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.3e-178 630.2 471 64.5
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 2.3e-178 629.4 471 66.9
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 2.3e-178 629.4 478 64.4
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 3.9e-178 628.6 481 64.0
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.1e-178 628.2 482 64.1
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 8.6e-178 627.5 471 65.6
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 5.6e-177 624.8 473 64.5
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 9.5e-177 624.0 473 66.6
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.6e-176 623.2 470 65.3
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.8e-176 622.5 471 65.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.6e-176 622.1 473 66.6
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 4.7e-176 621.7 471 63.9
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.8e-175 619.8 472 64.2
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.8e-175 619.8 490 62.7
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.3e-175 619.4 473 66.2
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 4.0e-175 618.6 473 64.3
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.0e-175 618.6 471 65.8
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 5.8e-174 614.8 476 67.0
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 5.8e-174 614.8 471 64.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.3e-173 613.6 473 63.8
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.9e-173 612.5 468 64.1
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 4.9e-173 611.7 471 65.0
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 8.3e-173 610.9 474 62.4
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 1.0e-170 604.0 470 63.2
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 1.1e-169 600.5 471 64.3
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 9.5e-169 597.4 469 63.8
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.2e-168 597.0 469 63.8
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 8.1e-168 594.3 483 60.9
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 8.9e-167 590.9 472 61.9
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.2e-164 582.4 471 61.4
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.2e-164 582.0 460 62.8
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.5e-161 572.8 470 60.6
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 9.6e-161 570.9 456 61.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.1e-160 569.7 476 60.9
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.8e-160 569.3 456 63.2
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.1e-159 567.4 480 59.6
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.8e-159 566.6 470 61.1
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.4e-158 562.4 456 61.4
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 3.4e-158 562.4 455 61.1
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 6.4e-157 558.1 478 58.4
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 1.6e-155 553.5 470 59.1
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 2.3e-154 549.7 446 59.9
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 3.9e-154 548.9 480 57.3
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 2.5e-153 546.2 480 57.9
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 4.3e-153 545.4 470 59.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 9.6e-153 544.3 475 57.1
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 4.0e-151 538.9 480 55.8
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 1.7e-149 533.5 475 56.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.0e-146 524.2 401 63.6
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 2.3e-146 523.1 477 54.3
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.6e-145 518.5 473 56.4
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 7.4e-145 518.1 474 55.5
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 4.8e-144 515.4 475 57.7
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.2e-144 515.0 471 54.8
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 4.0e-143 512.3 475 57.3
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 4.0e-143 512.3 470 55.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 5.3e-143 511.9 485 54.0
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 3.8e-141 505.8 473 56.4
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 8.4e-141 504.6 480 56.5
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.9e-140 503.4 471 54.1
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.2e-140 502.7 470 54.7
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 3.2e-140 502.7 322 76.1
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 3.2e-140 502.7 322 76.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 9.3e-140 501.1 475 55.6
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 4.6e-139 498.8 470 53.8
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-138 497.3 470 55.1
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.8e-138 496.9 474 54.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 3.0e-138 496.1 478 52.5
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 5.6e-137 491.9 470 54.0
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 5.6e-137 491.9 470 54.0
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-136 490.3 470 54.5
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.1e-136 490.0 470 54.7
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 3.7e-136 489.2 471 53.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 5.3e-135 485.3 475 53.7
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 9.0e-135 484.6 471 53.1
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.2e-134 484.2 471 53.1
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.7e-133 480.3 409 58.4
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.2e-133 479.9 471 53.3
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 2.9e-133 479.6 469 52.7
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-133 479.2 471 52.9
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 4.9e-133 478.8 480 52.9
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 6.5e-133 478.4 471 52.7
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.1e-132 477.6 470 53.2
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 7.1e-132 474.9 469 52.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 9.3e-132 474.6 469 52.7
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-131 474.2 474 53.6
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-131 474.2 474 53.6
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 4.6e-131 472.2 478 50.4
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-130 470.7 473 51.6
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 3.0e-130 469.5 477 50.5
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-129 466.1 460 51.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 5.7e-129 465.3 471 53.1
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 4.8e-128 462.2 471 51.6
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 4.8e-128 462.2 471 51.6
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 8.2e-128 461.5 471 49.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 1.4e-127 460.7 445 53.5
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 6.9e-127 458.4 467 51.6
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 9.0e-127 458.0 471 49.7
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-126 457.6 471 51.8
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 2.0e-126 456.8 471 51.4
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 4.5e-126 455.7 472 50.0
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 1.3e-125 454.1 469 51.2
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.8e-125 452.6 472 51.5
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 8.5e-125 451.4 472 51.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 8.5e-125 451.4 472 51.1
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 1.1e-124 451.1 459 49.9
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.2e-124 449.5 472 51.3
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.5e-124 448.7 478 47.9
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-123 446.8 474 51.5
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 2.3e-122 443.4 468 48.5
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.0e-122 443.0 467 51.2
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 1.1e-121 441.0 466 50.9
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 7.0e-111 405.2 453 46.6
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 1.1e-108 397.9 476 45.4
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-100 370.9 444 46.8
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.2e-99 367.9 439 45.6
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.7e-99 366.7 444 44.8
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.2e-98 362.5 492 42.5
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 1.3e-93 347.8 471 43.7
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 6.5e-93 345.5 441 42.4
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.1e-87 326.2 474 42.8
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 1.0e-82 311.6 338 52.1
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.2e-73 281.6 207 69.6
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.1e-71 273.1 351 41.3
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-66 258.1 211 58.8
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 8.6e-61 238.8 203 56.2
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-60 238.4 203 56.2
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 2.2e-56 224.2 209 53.6
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 2.7e-54 217.2 222 51.8
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 3.3e-52 210.3 165 63.0
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 2.1e-46 191.0 329 38.0
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 3.7e-27 127.1 288 36.1
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 5.3e-26 123.2 128 44.5
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.6e-19 101.7 123 46.3
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 5.0e-16 90.1 88 51.1
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 1.6e-14 85.1 90 50.0
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.3e-13 81.3 179 32.4
ATR0693G017 Amborella trichopoda HOM05D003903 ORTHO05D004828 1.9e-12 78.2 95 42.1
MBI02_g23015_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.8e-08 63.9 69 43.5
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 1.2e-06 58.9 94 40.4
SGA_v2.0_scaffold86G26891 Striga asiatica HOM05D003903 ORTHO05D402899 1.2e-06 58.9 49 51.0
SGA_v2.0_scaffold23G09991 Striga asiatica HOM05D037617 ORTHO05D404903 2.7e-06 57.8 40 65.0
SGA_v2.0_scaffold6G03305 Striga asiatica HOM05D037617 ORTHO05D399366 2.7e-06 57.8 40 62.5
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 4.6e-06 57.0 29 75.9


User provided reference genes

Program Settings