Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 2.3e-85 318.9 172 100.0
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 4.1e-21 105.5 176 36.9
SalBow6G7137 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.2e-20 104.0 217 33.6
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 3.2e-18 95.9 174 35.1
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 3.6e-17 92.4 207 32.9
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 3.0e-16 89.4 64 60.9
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 3.0e-16 89.4 64 60.9
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 6.7e-16 88.2 66 63.6
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 2.0e-15 86.7 169 33.1
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 2.6e-15 86.3 66 60.6
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 4.4e-15 85.5 62 62.9
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 4.4e-15 85.5 65 56.9
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 7.4e-15 84.7 147 36.7
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 7.4e-15 84.7 69 56.5
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 1.3e-14 84.0 69 55.1
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.3e-14 84.0 64 59.4
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 1.7e-14 83.6 68 55.9
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 2.2e-14 83.2 68 61.8
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 3.7e-14 82.4 70 52.9
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 4.8e-14 82.0 80 48.8
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 6.3e-14 81.6 206 30.6
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 8.2e-14 81.3 71 54.9
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 1.4e-13 80.5 69 55.1
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 1.4e-13 80.5 69 55.1
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 1.4e-13 80.5 69 55.1
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 1.4e-13 80.5 127 37.8
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 1.4e-13 80.5 74 51.4
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 2.4e-13 79.7 84 50.0
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 2.4e-13 79.7 77 54.5
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 3.1e-13 79.3 72 54.2
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 4.1e-13 79.0 60 58.3
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 4.1e-13 79.0 69 55.1
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 4.1e-13 79.0 204 32.8
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 5.3e-13 78.6 69 56.5
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 5.3e-13 78.6 67 59.7
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 6.9e-13 78.2 84 51.2
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 6.9e-13 78.2 79 49.4
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 9.1e-13 77.8 71 54.9
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 9.1e-13 77.8 70 51.4
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 1.2e-12 77.4 64 53.1
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 1.2e-12 77.4 52 63.5
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 1.2e-12 77.4 89 48.3
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 1.5e-12 77.0 67 49.3
CiPaw.16G099300 Carya illinoinensis HOM05D006281 ORTHO05D005138 1.5e-12 77.0 179 32.4
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 2.0e-12 76.6 174 31.0
COL.COLO4_25628 Corchorus olitorius HOM05D006281 ORTHO05D005138 3.4e-12 75.9 186 41.4
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 3.4e-12 75.9 69 55.1
MD17G1067400 Malus domestica HOM05D006281 ORTHO05D005138 3.4e-12 75.9 91 50.5
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 3.4e-12 75.9 66 57.6
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 3.4e-12 75.9 82 52.4
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 5.9e-12 75.1 81 49.4
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 7.7e-12 74.7 68 52.9
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 1.0e-11 74.3 74 50.0
Carub.0004s2218 Capsella rubella HOM05D010943 ORTHO05D005138 1.0e-11 74.3 67 52.2
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 1.0e-11 74.3 75 49.3
BcaB01g03596 Brassica carinata HOM05D010943 ORTHO05D005138 1.3e-11 73.9 66 53.0
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 1.3e-11 73.9 66 51.5
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 1.7e-11 73.6 75 46.7
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 2.2e-11 73.2 74 51.4
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 2.2e-11 73.2 67 49.3
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 2.2e-11 73.2 76 50.0
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 2.2e-11 73.2 56 55.4
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 2.9e-11 72.8 76 51.3
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 2.9e-11 72.8 70 48.6
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 2.9e-11 72.8 66 50.0
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 3.8e-11 72.4 174 31.6
DCAR_024837 Daucus carota HOM05D006281 ORTHO05D005138 3.8e-11 72.4 67 49.3
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 3.8e-11 72.4 73 50.7
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 5.0e-11 72.0 88 43.2
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 5.0e-11 72.0 66 53.0
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 5.0e-11 72.0 77 53.2
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 6.5e-11 71.6 57 63.2
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 6.5e-11 71.6 78 48.7
Phvul.008G225200 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 6.5e-11 71.6 71 53.5
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 6.5e-11 71.6 69 47.8
unitig_0.g237 Utricularia gibba HOM05D062541 ORTHO05D005138 6.5e-11 71.6 44 70.5
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 1.1e-10 70.9 79 46.8
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 1.1e-10 70.9 68 47.1
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 1.4e-10 70.5 67 46.3
DCAR_032142 Daucus carota HOM05D006281 ORTHO05D005138 1.4e-10 70.5 64 48.4
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.4e-10 70.5 68 45.6
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 1.4e-10 70.5 177 30.5
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 1.4e-10 70.5 89 42.7
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 1.4e-10 70.5 63 50.8
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 2.5e-10 69.7 67 46.3
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 2.5e-10 69.7 79 48.1
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 2.5e-10 69.7 67 46.3
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 2.5e-10 69.7 70 44.3
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 4.2e-10 68.9 88 44.3
GSVIVG01032854001 Vitis vinifera HOM05D043099 ORTHO05D005138 4.2e-10 68.9 233 26.2
Thhalv10017194m.g Eutrema salsugineum HOM05D010943 ORTHO05D005138 5.5e-10 68.6 63 50.8
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 5.5e-10 68.6 75 49.3
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 7.2e-10 68.2 62 45.2
Zm00001eb050110 Zea mays HOM05D006281 ORTHO05D005138 7.2e-10 68.2 69 44.9
PSO384G4516 Papaver somniferum HOM05D006281 ORTHO05D005138 9.4e-10 67.8 58 58.6
RcHm_v2.0_Chr1g0369781 Rosa chinensis HOM05D006281 ORTHO05D005138 9.4e-10 67.8 86 43.0
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 1.2e-09 67.4 68 45.6
AT2G40020 Arabidopsis thaliana HOM05D010943 ORTHO05D005138 1.6e-09 67.0 67 52.2
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 1.6e-09 67.0 74 51.4
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 1.6e-09 67.0 69 47.8
Hund20200 Selenicereus undatus HOM05D006281 ORTHO05D005138 1.6e-09 67.0 66 50.0
Glyma.02G255900 Glycine max HOM05D006281 ORTHO05D005138 2.1e-09 66.6 77 42.9
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea HOM05D006281 ORTHO05D005138 2.7e-09 66.2 71 46.5
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 2.7e-09 66.2 77 44.2
Carub.0001s3571 Capsella rubella HOM05D010943 ORTHO05D005138 2.7e-09 66.2 67 44.8
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 3.6e-09 65.9 67 55.2
BcaC01g05445 Brassica carinata HOM05D010943 ORTHO05D005138 4.7e-09 65.5 70 50.0
A03p22480 Brassica napus HOM05D010943 ORTHO05D005138 4.7e-09 65.5 70 50.0
C03p26630 Brassica napus HOM05D010943 ORTHO05D005138 4.7e-09 65.5 70 50.0
BolC3t15048H Brassica oleracea HOM05D010943 ORTHO05D005138 4.7e-09 65.5 70 50.0
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 4.7e-09 65.5 71 42.3
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 4.7e-09 65.5 141 34.8
VMungo0647G1369 Vigna mungo HOM05D006949 ORTHO05D008621 4.7e-09 65.5 62 50.0
A05p06410 Brassica napus HOM05D001301 ORTHO05D001169 6.1e-09 65.1 62 46.8
Haze_25248 Corylus avellana HOM05D006281 ORTHO05D005138 6.1e-09 65.1 60 48.3
PSO339G3794 Papaver somniferum HOM05D006281 ORTHO05D005138 6.1e-09 65.1 58 53.4
Lsat_1_v5_gn_8_31300 Lactuca sativa HOM05D006281 ORTHO05D005138 8.0e-09 64.7 183 26.2
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 8.0e-09 64.7 202 28.2
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 8.0e-09 64.7 67 53.7
arahy.Tifrunner.gnm1.ann1.ZTR0B0 Arachis hypogaea HOM05D006281 ORTHO05D005138 1.0e-08 64.3 71 46.5
AL4G37660 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 1.4e-08 63.9 62 51.6
PSO013G0071 Papaver somniferum HOM05D002788 ORTHO05D005138 1.4e-08 63.9 58 53.4
PSO832G0699 Papaver somniferum HOM05D002788 ORTHO05D005138 1.4e-08 63.9 58 53.4
AL1G53000 Arabidopsis lyrata HOM05D010943 ORTHO05D005138 1.8e-08 63.5 66 47.0
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 1.8e-08 63.5 79 44.3
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.3e-08 63.2 88 40.9
PSO384G0199 Papaver somniferum HOM05D006281 ORTHO05D005138 2.3e-08 63.2 58 48.3
Nitab4.5_0000802g0120 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.0e-08 62.8 70 48.6
Glyma.06G220600 Glycine max HOM05D006281 ORTHO05D005138 3.9e-08 62.4 52 53.8
Nitab4.5_0005628g0030 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.9e-08 62.4 70 47.1
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 5.2e-08 62.0 244 26.6
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 5.2e-08 62.0 71 46.5
Os09g0114700 Oryza sativa ssp. japonica HOM05D006281 ORTHO05D005138 5.2e-08 62.0 70 47.1
PSO339G5625 Papaver somniferum HOM05D006281 ORTHO05D005138 5.2e-08 62.0 57 49.1
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 6.7e-08 61.6 66 51.5
Glyma.18G211600 Glycine max HOM05D006281 ORTHO05D005138 1.5e-07 60.5 63 46.0
CARHR134980 Cardamine hirsuta HOM05D010943 ORTHO05D005138 2.0e-07 60.1 67 44.8
AT1G45248 Arabidopsis thaliana HOM05D010943 ORTHO05D005138 2.6e-07 59.7 60 50.0
CiPaw.16G099400 Carya illinoinensis HOM05D006281 ORTHO05D005138 2.6e-07 59.7 162 30.9
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 4.4e-07 58.9 78 43.6
SEGI_11125 Sequoiadendron giganteum HOM05D006281 ORTHO05D005138 4.4e-07 58.9 68 42.6
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 5.7e-07 58.5 141 33.3
BolC2t08666H Brassica oleracea HOM05D010943 ORTHO05D005138 7.4e-07 58.2 67 38.8
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 7.4e-07 58.2 197 25.9
BraA03t11475Z Brassica rapa HOM05D010943 ORTHO05D005138 1.3e-06 57.4 59 47.5
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 1.3e-06 57.4 81 38.3
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 1.7e-06 57.0 182 28.0
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 1.7e-06 57.0 193 26.4
AagrBONN_evm.TU.Sc2ySwM_368.942 Anthoceros agrestis HOM05D030171 ORTHO05D005138 2.2e-06 56.6 81 33.3
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.2e-06 56.6 203 25.6
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 3.7e-06 55.8 195 27.2
ECA238G3711 Erigeron canadensis HOM05D006281 ORTHO05D005138 6.3e-06 55.1 65 46.2


User provided reference genes

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