Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc02_g06750 Coffea canephora HOM05D006281 ORTHO05D005138 1.5e-158 562.8 279 100.0
Nitab4.5_0000802g0120 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.4e-33 146.4 339 36.0
Dinv34408 Davidia involucrata HOM05D006281 ORTHO05D005138 4.9e-32 142.5 310 37.1
Actinidia29689 Actinidia chinensis HOM05D006949 ORTHO05D008621 2.0e-30 137.1 275 37.5
Actinidia33937 Actinidia chinensis HOM05D006281 ORTHO05D005138 8.6e-29 131.7 280 37.5
Nitab4.5_0005628g0030 Nicotiana tabacum HOM05D006281 ORTHO05D005138 4.7e-27 125.9 300 36.0
Nitab4.5_0005628g0040 Nicotiana tabacum HOM05D006281 ORTHO05D005138 6.6e-21 105.5 255 35.7
Ciclev10033546m.g Citrus clementina HOM05D006281 ORTHO05D005138 2.5e-20 103.6 281 33.1
Migut.F00696 Erythranthe guttata HOM05D006281 ORTHO05D005138 1.6e-19 100.9 280 36.1
TAR633G0389 Trochodendron aralioides HOM05D006281 ORTHO05D005138 1.8e-18 97.4 298 30.2
Lj5g0025792 Lotus japonicus HOM05D006281 ORTHO05D005138 5.2e-18 95.9 259 35.1
Cfa001348 Carpinus fangiana HOM05D006281 ORTHO05D005138 6.8e-18 95.5 292 30.8
Nitab4.5_0000802g0100 Nicotiana tabacum HOM05D006281 ORTHO05D005138 3.4e-17 93.2 192 38.5
Peaxi162Scf01313g00025 Petunia axillaris HOM05D006281 ORTHO05D005138 1.7e-16 90.9 292 30.5
Oeu025174.1 Olea europaea HOM05D006281 ORTHO05D005138 1.1e-15 88.2 131 49.6
Sopen06g008590 Solanum pennellii HOM05D006281 ORTHO05D005138 1.1e-15 88.2 217 36.9
Haze_17206 Corylus avellana HOM05D006281 ORTHO05D005138 5.4e-15 85.9 289 29.8
AUR62043156 Chenopodium quinoa HOM05D006281 ORTHO05D005138 3.5e-14 83.2 283 32.9
Potri.010G190800 Populus trichocarpa HOM05D006281 ORTHO05D005138 3.5e-14 83.2 266 32.0
CAN.G372.4 Capsicum annuum HOM05D006281 ORTHO05D005138 4.6e-14 82.8 97 51.5
Manes.07G127600 Manihot esculenta HOM05D006281 ORTHO05D005138 1.7e-13 80.9 229 28.8
Solyc06g030540.4 Solanum lycopersicum HOM05D006281 ORTHO05D005138 1.7e-13 80.9 99 48.5
Gohir.A10G234000 Gossypium hirsutum HOM05D006281 ORTHO05D005138 6.6e-13 79.0 285 28.4
arahy.Tifrunner.gnm1.ann1.WVY9VA Arachis hypogaea HOM05D006281 ORTHO05D005138 1.1e-12 78.2 296 26.4
Manes.10G014600 Manihot esculenta HOM05D006281 ORTHO05D005138 1.1e-12 78.2 294 29.9
Phvul.007G184700 Phaseolus vulgaris HOM05D006281 ORTHO05D005138 1.1e-12 78.2 253 30.8
QL08p063014 Quercus lobata HOM05D006281 ORTHO05D005138 1.9e-12 77.4 283 28.6
Sc07g0006300 Simmondsia chinensis HOM05D006281 ORTHO05D005138 3.3e-12 76.6 283 29.7
Peaxi162Scf01313g00024 Petunia axillaris HOM05D006281 ORTHO05D005138 5.6e-12 75.9 75 56.0
Prupe.2G247900 Prunus persica HOM05D006281 ORTHO05D005138 5.6e-12 75.9 72 56.9
AUR62040493 Chenopodium quinoa HOM05D006281 ORTHO05D005138 2.1e-11 73.9 283 30.0
SalBow3G2112 Salvia bowleyana HOM05D006281 ORTHO05D005138 2.8e-11 73.6 137 39.4
QL11p005716 Quercus lobata HOM05D021521 ORTHO05D005138 3.6e-11 73.2 146 36.3
LjContig00357g0022557 Lotus japonicus HOM05D006281 ORTHO05D005138 4.7e-11 72.8 113 45.1
arahy.Tifrunner.gnm1.ann1.Y6I58B Arachis hypogaea HOM05D006281 ORTHO05D005138 6.2e-11 72.4 296 26.0
Haze_18961 Corylus avellana HOM05D006281 ORTHO05D005138 6.2e-11 72.4 73 52.1
QL05p072246 Quercus lobata HOM05D021521 ORTHO05D005138 6.2e-11 72.4 140 37.9
BraA05t19609Z Brassica rapa HOM05D001301 ORTHO05D001169 1.1e-10 71.6 102 42.2
Medtr1g111690 Medicago truncatula HOM05D006281 ORTHO05D005138 1.4e-10 71.2 97 43.3
BcaB02g09060 Brassica carinata HOM05D010943 ORTHO05D005138 2.4e-10 70.5 92 44.6
Gorai.011G284000 Gossypium raimondii HOM05D006281 ORTHO05D005138 2.4e-10 70.5 281 26.7
Medtr5g082250 Medicago truncatula HOM05D006281 ORTHO05D005138 2.4e-10 70.5 287 26.8
TPR.G2715 Trifolium pratense HOM05D006281 ORTHO05D005138 3.1e-10 70.1 77 46.8
ClCG11G006260 Citrullus lanatus HOM05D006281 ORTHO05D005138 4.0e-10 69.7 285 29.5
ECA238G3711 Erigeron canadensis HOM05D006281 ORTHO05D005138 5.2e-10 69.3 112 42.0
Aa31LG5G19580 Aethionema arabicum HOM05D010943 ORTHO05D005138 6.8e-10 68.9 83 43.4
Aqoxy3G02946 Aquilegia oxysepala HOM05D006281 ORTHO05D005138 1.2e-09 68.2 80 46.2
CsaV3_6G001730 Cucumis sativus L. HOM05D006281 ORTHO05D005138 1.2e-09 68.2 72 51.4
Glyma.20G229400 Glycine max HOM05D006281 ORTHO05D005138 1.5e-09 67.8 79 46.8
RcHm_v2.0_Chr6g0274431 Rosa chinensis HOM05D006281 ORTHO05D005138 1.5e-09 67.8 142 35.9
THA.LOC104824311 Tarenaya hassleriana HOM05D006281 ORTHO05D005138 1.5e-09 67.8 148 34.5
C04p07420 Brassica napus HOM05D001301 ORTHO05D001169 2.0e-09 67.4 262 29.0
MD01G1149600 Malus domestica HOM05D006281 ORTHO05D005138 2.0e-09 67.4 77 50.6
Thecc.10G022800 Theobroma cacao HOM05D006281 ORTHO05D005138 2.0e-09 67.4 295 27.5
HanXRQChr07g0202561 Helianthus annuus HOM05D006281 ORTHO05D005138 2.6e-09 67.0 129 35.7
PGR142G2970 Punica granatum HOM05D006281 ORTHO05D005138 2.6e-09 67.0 74 55.4
EL10Ac7g16532 Beta vulgaris HOM05D006281 ORTHO05D005138 3.4e-09 66.6 291 29.6
Medtr1g081780 Medicago truncatula HOM05D006281 ORTHO05D005138 4.4e-09 66.2 73 47.9
Psat0s288g0040 Pisum sativum HOM05D006281 ORTHO05D005138 4.4e-09 66.2 275 24.7
BolC4t22363H Brassica oleracea HOM05D001301 ORTHO05D001169 5.8e-09 65.9 264 28.0
Medtr6g033440 Medicago truncatula HOM05D006281 ORTHO05D005138 5.8e-09 65.9 79 45.6
TPR.G19854 Trifolium pratense HOM05D006281 ORTHO05D005138 7.6e-09 65.5 93 46.2
TWI53G0395 Tripterygium wilfordii HOM05D006281 ORTHO05D005138 7.6e-09 65.5 325 28.0
PGR142G2831 Punica granatum HOM05D006281 ORTHO05D005138 9.9e-09 65.1 74 52.7
VMungo0720G2983 Vigna mungo HOM05D006281 ORTHO05D005138 9.9e-09 65.1 261 28.0
MSTRG.8320 Avicennia marina HOM05D006281 ORTHO05D005138 1.3e-08 64.7 138 33.3
Cc02_g06760 Coffea canephora HOM05D006281 ORTHO05D005138 1.3e-08 64.7 71 42.3
FAN03G1065 Fragaria x ananassa HOM05D006281 ORTHO05D005138 2.2e-08 63.9 289 29.4
Lsat_1_v5_gn_2_121281 Lactuca sativa HOM05D006281 ORTHO05D005138 2.2e-08 63.9 292 26.7
ECA233G1951 Erigeron canadensis HOM05D006281 ORTHO05D005138 2.9e-08 63.5 131 35.1
Nitab4.5_0005628g0020 Nicotiana tabacum HOM05D006281 ORTHO05D005138 2.9e-08 63.5 109 37.6
CANSAT56G0859 Cannabis sativa HOM05D006281 ORTHO05D005138 4.9e-08 62.8 69 49.3
FAN15G2203 Fragaria x ananassa HOM05D006281 ORTHO05D005138 6.4e-08 62.4 124 40.3
Sp4g22330 Schrenkiella parvula HOM05D010943 ORTHO05D005138 6.4e-08 62.4 72 48.6
vmacro06983 Vaccinium macrocarpon HOM05D006281 ORTHO05D005138 6.4e-08 62.4 80 48.8
arahy.Tifrunner.gnm1.ann1.0XLH38 Arachis hypogaea HOM05D006281 ORTHO05D005138 8.4e-08 62.0 136 36.0
FvH4_7g24210 Fragaria vesca HOM05D006281 ORTHO05D005138 8.4e-08 62.0 283 28.3
FAN10G2794 Fragaria x ananassa HOM05D006949 ORTHO05D008621 8.4e-08 62.0 282 29.8
BolC2t08666H Brassica oleracea HOM05D010943 ORTHO05D005138 1.1e-07 61.6 66 48.5
Lalb_Chr02g0148591 Lupinus albus HOM05D006281 ORTHO05D005138 1.1e-07 61.6 257 27.6
ATR0618G177 Amborella trichopoda HOM05D006281 ORTHO05D005138 1.4e-07 61.2 122 32.8
Duzib114G0722 Durio zibethinus HOM05D006949 ORTHO05D008621 1.4e-07 61.2 72 44.4
FvH4_2g13151 Fragaria vesca HOM05D006281 ORTHO05D005138 1.4e-07 61.2 124 41.9
FAN20G0701 Fragaria x ananassa HOM05D006281 ORTHO05D005138 1.4e-07 61.2 124 41.9
TAR623G1110 Trochodendron aralioides HOM05D000895 ORTHO05D005138 1.4e-07 61.2 273 27.8
CANSAT56G1147 Cannabis sativa HOM05D006281 ORTHO05D005138 1.9e-07 60.8 69 47.8
Ca_10064_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 1.9e-07 60.8 252 27.4
DCAR_027547 Daucus carota HOM05D000021 ORTHO05D035016 1.9e-07 60.8 74 47.3
Lalb_Chr10g0105101 Lupinus albus HOM05D006281 ORTHO05D005138 1.9e-07 60.8 241 30.3
Medtr1g111700 Medicago truncatula HOM05D006281 ORTHO05D005138 1.9e-07 60.8 81 44.4
Hund20200 Selenicereus undatus HOM05D006281 ORTHO05D005138 1.9e-07 60.8 73 46.6
Manes.10G015100 Manihot esculenta HOM05D006281 ORTHO05D005138 2.4e-07 60.5 231 28.1
Nn2g11433 Nelumbo nucifera HOM05D006281 ORTHO05D005138 2.4e-07 60.5 73 46.6
Zm00001eb050100 Zea mays HOM05D006281 ORTHO05D005138 2.4e-07 60.5 89 37.1
Gohir.D10G246300 Gossypium hirsutum HOM05D006281 ORTHO05D005138 3.2e-07 60.1 270 25.6
Sed0005546 Sechium edule HOM05D006281 ORTHO05D005138 3.2e-07 60.1 112 33.9
Atru.chr12.10 Acer truncatum HOM05D006281 ORTHO05D005138 4.1e-07 59.7 244 29.1
MELO3C029900.2 Cucumis melo HOM05D006281 ORTHO05D005138 4.1e-07 59.7 59 52.5
Dinv20972 Davidia involucrata HOM05D000895 ORTHO05D002393 4.1e-07 59.7 86 39.5
Dinv21033 Davidia involucrata HOM05D000895 ORTHO05D002393 4.1e-07 59.7 86 39.5
Manes.10G014800 Manihot esculenta HOM05D006281 ORTHO05D005138 4.1e-07 59.7 239 28.0
FAN06G1003 Fragaria x ananassa HOM05D006281 ORTHO05D005138 5.4e-07 59.3 95 42.1
COL.COLO4_25627 Corchorus olitorius HOM05D006949 ORTHO05D008621 7.1e-07 58.9 115 36.5
PSO339G3794 Papaver somniferum HOM05D006281 ORTHO05D005138 9.2e-07 58.5 75 45.3
PSO384G4516 Papaver somniferum HOM05D006281 ORTHO05D005138 9.2e-07 58.5 67 44.8
HanXRQChr12g0367471 Helianthus annuus HOM05D006281 ORTHO05D005138 1.2e-06 58.2 106 35.8
BcaC03g15045 Brassica carinata HOM05D010943 ORTHO05D005138 1.6e-06 57.8 66 48.5
FAN01G2469 Fragaria x ananassa HOM05D006281 ORTHO05D005138 1.6e-06 57.8 287 27.9
MBI14_g22157_MAGBIO Magnolia biondii HOM05D006281 ORTHO05D005138 1.6e-06 57.8 73 39.7
Nitab4.5_0000802g0130 Nicotiana tabacum HOM05D006281 ORTHO05D005138 1.6e-06 57.8 74 45.9
Actinidia13926 Actinidia chinensis HOM05D006281 ORTHO05D005138 2.1e-06 57.4 48 58.3
Ca_05949_v3 Cicer arietinum L. HOM05D006281 ORTHO05D005138 2.7e-06 57.0 60 50.0
Glyma.10G159300 Glycine max HOM05D006281 ORTHO05D005138 2.7e-06 57.0 273 25.3
DCAR_032142 Daucus carota HOM05D006281 ORTHO05D005138 3.5e-06 56.6 164 31.7
QL05p066700 Quercus lobata HOM05D006281 ORTHO05D005138 3.5e-06 56.6 108 37.0
Psat6g147880 Pisum sativum HOM05D006281 ORTHO05D005138 4.6e-06 56.2 74 40.5
PSO384G0199 Papaver somniferum HOM05D006281 ORTHO05D005138 6.0e-06 55.8 66 43.9


User provided reference genes

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